data_5UPV # _model_server_result.job_id vPJOROh4YXn3XFhKGj0lIg _model_server_result.datetime_utc '2024-12-02 07:27:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5upv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5UPV # _exptl.entry_id 5UPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UPV _cell.length_a 88.128 _cell.length_b 88.128 _cell.length_c 84.364 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 232 n n P O2P IMP sing 233 n n P O3P IMP sing 234 n n P O5' IMP sing 235 n n O2P HOP2 IMP sing 236 n n O3P HOP3 IMP sing 237 n n O5' C5' IMP sing 238 n n C5' C4' IMP sing 239 n n C5' "H5'1" IMP sing 240 n n C5' "H5'2" IMP sing 241 n n C4' O4' IMP sing 242 n n C4' C3' IMP sing 243 n n C4' H4' IMP sing 244 n n O4' C1' IMP sing 245 n n C3' O3' IMP sing 246 n n C3' C2' IMP sing 247 n n C3' H3' IMP sing 248 n n O3' HO3' IMP sing 249 n n C2' O2' IMP sing 250 n n C2' C1' IMP sing 251 n n C2' H2' IMP sing 252 n n O2' HO2' IMP sing 253 n n C1' N9 IMP sing 254 n n C1' H1' IMP sing 255 n n N9 C8 IMP sing 256 n y N9 C4 IMP sing 257 n y C8 N7 IMP doub 258 n y C8 H8 IMP sing 259 n n N7 C5 IMP sing 260 n y C5 C6 IMP sing 261 n n C5 C4 IMP doub 262 n y C6 O6 IMP doub 263 n n C6 N1 IMP sing 264 n n N1 C2 IMP sing 265 n n N1 HN1 IMP sing 266 n n C2 N3 IMP doub 267 n n C2 H2 IMP sing 268 n n N3 C4 IMP sing 269 n n # _atom_sites.entry_id 5UPV _atom_sites.fract_transf_matrix[1][1] 0.011347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 8KV A 1 602 551 8KV G36 . D 4 FMT A 1 603 553 FMT FMT . E 5 EDO A 1 604 554 EDO EDO . F 4 FMT A 1 605 555 FMT FMT . G 5 EDO A 1 606 557 EDO EDO . H 5 EDO A 1 607 558 EDO EDO . I 4 FMT A 1 608 559 FMT FMT . J 6 HOH A 1 701 25 HOH HOH . J 6 HOH A 2 702 140 HOH HOH . J 6 HOH A 3 703 142 HOH HOH . J 6 HOH A 4 704 149 HOH HOH . J 6 HOH A 5 705 36 HOH HOH . J 6 HOH A 6 706 116 HOH HOH . J 6 HOH A 7 707 47 HOH HOH . J 6 HOH A 8 708 119 HOH HOH . J 6 HOH A 9 709 135 HOH HOH . J 6 HOH A 10 710 10 HOH HOH . J 6 HOH A 11 711 90 HOH HOH . J 6 HOH A 12 712 78 HOH HOH . J 6 HOH A 13 713 58 HOH HOH . J 6 HOH A 14 714 103 HOH HOH . J 6 HOH A 15 715 70 HOH HOH . J 6 HOH A 16 716 87 HOH HOH . J 6 HOH A 17 717 134 HOH HOH . J 6 HOH A 18 718 146 HOH HOH . J 6 HOH A 19 719 13 HOH HOH . J 6 HOH A 20 720 24 HOH HOH . J 6 HOH A 21 721 66 HOH HOH . J 6 HOH A 22 722 39 HOH HOH . J 6 HOH A 23 723 35 HOH HOH . J 6 HOH A 24 724 81 HOH HOH . J 6 HOH A 25 725 44 HOH HOH . J 6 HOH A 26 726 84 HOH HOH . J 6 HOH A 27 727 50 HOH HOH . J 6 HOH A 28 728 157 HOH HOH . J 6 HOH A 29 729 3 HOH HOH . J 6 HOH A 30 730 4 HOH HOH . J 6 HOH A 31 731 108 HOH HOH . J 6 HOH A 32 732 77 HOH HOH . J 6 HOH A 33 733 52 HOH HOH . J 6 HOH A 34 734 16 HOH HOH . J 6 HOH A 35 735 54 HOH HOH . J 6 HOH A 36 736 153 HOH HOH . J 6 HOH A 37 737 53 HOH HOH . J 6 HOH A 38 738 26 HOH HOH . J 6 HOH A 39 739 123 HOH HOH . J 6 HOH A 40 740 158 HOH HOH . J 6 HOH A 41 741 55 HOH HOH . J 6 HOH A 42 742 156 HOH HOH . J 6 HOH A 43 743 65 HOH HOH . J 6 HOH A 44 744 113 HOH HOH . J 6 HOH A 45 745 100 HOH HOH . J 6 HOH A 46 746 33 HOH HOH . J 6 HOH A 47 747 7 HOH HOH . J 6 HOH A 48 748 62 HOH HOH . J 6 HOH A 49 749 1 HOH HOH . J 6 HOH A 50 750 117 HOH HOH . J 6 HOH A 51 751 107 HOH HOH . J 6 HOH A 52 752 136 HOH HOH . J 6 HOH A 53 753 42 HOH HOH . J 6 HOH A 54 754 145 HOH HOH . J 6 HOH A 55 755 138 HOH HOH . J 6 HOH A 56 756 2 HOH HOH . J 6 HOH A 57 757 15 HOH HOH . J 6 HOH A 58 758 14 HOH HOH . J 6 HOH A 59 759 11 HOH HOH . J 6 HOH A 60 760 99 HOH HOH . J 6 HOH A 61 761 97 HOH HOH . J 6 HOH A 62 762 68 HOH HOH . J 6 HOH A 63 763 34 HOH HOH . J 6 HOH A 64 764 111 HOH HOH . J 6 HOH A 65 765 46 HOH HOH . J 6 HOH A 66 766 92 HOH HOH . J 6 HOH A 67 767 159 HOH HOH . J 6 HOH A 68 768 20 HOH HOH . J 6 HOH A 69 769 56 HOH HOH . J 6 HOH A 70 770 31 HOH HOH . J 6 HOH A 71 771 76 HOH HOH . J 6 HOH A 72 772 93 HOH HOH . J 6 HOH A 73 773 109 HOH HOH . J 6 HOH A 74 774 9 HOH HOH . J 6 HOH A 75 775 37 HOH HOH . J 6 HOH A 76 776 80 HOH HOH . J 6 HOH A 77 777 32 HOH HOH . J 6 HOH A 78 778 79 HOH HOH . J 6 HOH A 79 779 41 HOH HOH . J 6 HOH A 80 780 40 HOH HOH . J 6 HOH A 81 781 38 HOH HOH . J 6 HOH A 82 782 61 HOH HOH . J 6 HOH A 83 783 72 HOH HOH . J 6 HOH A 84 784 144 HOH HOH . J 6 HOH A 85 785 19 HOH HOH . J 6 HOH A 86 786 85 HOH HOH . J 6 HOH A 87 787 49 HOH HOH . J 6 HOH A 88 788 23 HOH HOH . J 6 HOH A 89 789 6 HOH HOH . J 6 HOH A 90 790 5 HOH HOH . J 6 HOH A 91 791 89 HOH HOH . J 6 HOH A 92 792 121 HOH HOH . J 6 HOH A 93 793 120 HOH HOH . J 6 HOH A 94 794 12 HOH HOH . J 6 HOH A 95 795 155 HOH HOH . J 6 HOH A 96 796 101 HOH HOH . J 6 HOH A 97 797 67 HOH HOH . J 6 HOH A 98 798 21 HOH HOH . J 6 HOH A 99 799 154 HOH HOH . J 6 HOH A 100 800 151 HOH HOH . J 6 HOH A 101 801 59 HOH HOH . J 6 HOH A 102 802 69 HOH HOH . J 6 HOH A 103 803 98 HOH HOH . J 6 HOH A 104 804 95 HOH HOH . J 6 HOH A 105 805 57 HOH HOH . J 6 HOH A 106 806 45 HOH HOH . J 6 HOH A 107 807 82 HOH HOH . J 6 HOH A 108 808 110 HOH HOH . J 6 HOH A 109 809 27 HOH HOH . J 6 HOH A 110 810 147 HOH HOH . J 6 HOH A 111 811 63 HOH HOH . J 6 HOH A 112 812 114 HOH HOH . J 6 HOH A 113 813 28 HOH HOH . J 6 HOH A 114 814 83 HOH HOH . J 6 HOH A 115 815 94 HOH HOH . J 6 HOH A 116 816 60 HOH HOH . J 6 HOH A 117 817 128 HOH HOH . J 6 HOH A 118 818 115 HOH HOH . J 6 HOH A 119 819 74 HOH HOH . J 6 HOH A 120 820 18 HOH HOH . J 6 HOH A 121 821 73 HOH HOH . J 6 HOH A 122 822 129 HOH HOH . J 6 HOH A 123 823 48 HOH HOH . J 6 HOH A 124 824 17 HOH HOH . J 6 HOH A 125 825 22 HOH HOH . J 6 HOH A 126 826 30 HOH HOH . J 6 HOH A 127 827 137 HOH HOH . J 6 HOH A 128 828 64 HOH HOH . J 6 HOH A 129 829 43 HOH HOH . J 6 HOH A 130 830 112 HOH HOH . J 6 HOH A 131 831 75 HOH HOH . J 6 HOH A 132 832 29 HOH HOH . J 6 HOH A 133 833 51 HOH HOH . J 6 HOH A 134 834 105 HOH HOH . J 6 HOH A 135 835 8 HOH HOH . J 6 HOH A 136 836 118 HOH HOH . J 6 HOH A 137 837 148 HOH HOH . J 6 HOH A 138 838 102 HOH HOH . J 6 HOH A 139 839 143 HOH HOH . J 6 HOH A 140 840 139 HOH HOH . J 6 HOH A 141 841 86 HOH HOH . J 6 HOH A 142 842 133 HOH HOH . J 6 HOH A 143 843 91 HOH HOH . J 6 HOH A 144 844 127 HOH HOH . J 6 HOH A 145 845 125 HOH HOH . J 6 HOH A 146 846 130 HOH HOH . J 6 HOH A 147 847 131 HOH HOH . J 6 HOH A 148 848 152 HOH HOH . J 6 HOH A 149 849 150 HOH HOH . J 6 HOH A 150 850 132 HOH HOH . J 6 HOH A 151 851 106 HOH HOH . J 6 HOH A 152 852 124 HOH HOH . J 6 HOH A 153 853 122 HOH HOH . J 6 HOH A 154 854 126 HOH HOH . J 6 HOH A 155 855 71 HOH HOH . J 6 HOH A 156 856 96 HOH HOH . J 6 HOH A 157 857 88 HOH HOH . J 6 HOH A 158 858 104 HOH HOH . J 6 HOH A 159 859 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 11.253 19.374 5.454 1 24.11 ? P IMP 601 A 1 HETATM 2 O O1P IMP . . . B 2 10.589 18.151 4.865 1 22.5 ? O1P IMP 601 A 1 HETATM 3 O O2P IMP . . . B 2 10.996 19.566 6.933 1 25.7 ? O2P IMP 601 A 1 HETATM 4 O O3P IMP . . . B 2 12.746 19.323 5.177 1 26.6 ? O3P IMP 601 A 1 HETATM 5 O O5' IMP . . . B 2 10.604 20.606 4.675 1 22.11 ? O5' IMP 601 A 1 HETATM 6 C C5' IMP . . . B 2 11.074 21.933 4.84 1 22.38 ? C5' IMP 601 A 1 HETATM 7 C C4' IMP . . . B 2 10.422 22.844 3.824 1 23.51 ? C4' IMP 601 A 1 HETATM 8 O O4' IMP . . . B 2 8.998 22.942 4.072 1 25.97 ? O4' IMP 601 A 1 HETATM 9 C C3' IMP . . . B 2 10.878 24.284 3.839 1 23.73 ? C3' IMP 601 A 1 HETATM 10 O O3' IMP . . . B 2 12.161 24.462 3.243 1 22.77 ? O3' IMP 601 A 1 HETATM 11 C C2' IMP . . . B 2 9.726 25.004 3.124 1 26.15 ? C2' IMP 601 A 1 HETATM 12 O O2' IMP . . . B 2 9.835 24.858 1.714 1 25.18 ? O2' IMP 601 A 1 HETATM 13 C C1' IMP . . . B 2 8.517 24.18 3.575 1 25.12 ? C1' IMP 601 A 1 HETATM 14 N N9 IMP . . . B 2 7.707 24.828 4.626 1 27.35 ? N9 IMP 601 A 1 HETATM 15 C C8 IMP . . . B 2 8.078 25.461 5.776 1 25.82 ? C8 IMP 601 A 1 HETATM 16 N N7 IMP . . . B 2 6.95 25.821 6.448 1 26.32 ? N7 IMP 601 A 1 HETATM 17 C C5 IMP . . . B 2 5.858 25.413 5.753 1 25.88 ? C5 IMP 601 A 1 HETATM 18 C C6 IMP . . . B 2 4.477 25.497 5.958 1 29.88 ? C6 IMP 601 A 1 HETATM 19 O O6 IMP . . . B 2 3.991 25.841 7.042 1 27.46 ? O6 IMP 601 A 1 HETATM 20 N N1 IMP . . . B 2 3.636 24.946 5.019 1 26.54 ? N1 IMP 601 A 1 HETATM 21 C C2 IMP . . . B 2 4.142 24.34 3.894 1 26.45 ? C2 IMP 601 A 1 HETATM 22 N N3 IMP . . . B 2 5.501 24.241 3.711 1 27.81 ? N3 IMP 601 A 1 HETATM 23 C C4 IMP . . . B 2 6.337 24.774 4.619 1 28.74 ? C4 IMP 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #