data_5UPV # _model_server_result.job_id VI878MkQQz440XfURFjrOw _model_server_result.datetime_utc '2024-10-10 23:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5upv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5UPV # _exptl.entry_id 5UPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{(1S)-1-[3-methoxy-4-(1,3-oxazol-5-yl)phenyl]ethyl}-N'-phenylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UPV _cell.length_a 88.128 _cell.length_b 88.128 _cell.length_c 84.364 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N3 O3' _chem_comp.formula_weight 337.372 _chem_comp.id 8KV _chem_comp.mon_nstd_flag . _chem_comp.name "N-{(1S)-1-[3-methoxy-4-(1,3-oxazol-5-yl)phenyl]ethyl}-N'-phenylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 8KV doub 1 n y C11 C12 8KV sing 2 n y C10 C9 8KV sing 3 n y C12 C13 8KV doub 4 n y C9 C8 8KV doub 5 n y C13 C8 8KV sing 6 n y C8 N2 8KV sing 7 n n N2 C7 8KV sing 8 n n O2 C7 8KV doub 9 n n C7 N1 8KV sing 10 n n C19 O3 8KV sing 11 n y C19 N3 8KV doub 12 n y O3 C17 8KV sing 13 n y C15 C14 8KV doub 14 n y C15 C16 8KV sing 15 n y N1 C5 8KV sing 16 n n N3 C18 8KV sing 17 n y C14 C4 8KV sing 18 n y C17 C16 8KV sing 19 n n C17 C18 8KV doub 20 n y C16 C2 8KV doub 21 n y C4 C5 8KV sing 22 n n C4 C3 8KV doub 23 n y C5 C6 8KV sing 24 n n C2 C3 8KV sing 25 n y C2 O1 8KV sing 26 n n O1 C1 8KV sing 27 n n C5 H1 8KV sing 28 n n C6 H2 8KV sing 29 n n C6 H3 8KV sing 30 n n C6 H4 8KV sing 31 n n N1 H5 8KV sing 32 n n N2 H6 8KV sing 33 n n C1 H7 8KV sing 34 n n C1 H8 8KV sing 35 n n C1 H9 8KV sing 36 n n C10 H10 8KV sing 37 n n C11 H11 8KV sing 38 n n C12 H12 8KV sing 39 n n C13 H13 8KV sing 40 n n C14 H14 8KV sing 41 n n C15 H15 8KV sing 42 n n C18 H16 8KV sing 43 n n C19 H17 8KV sing 44 n n C3 H18 8KV sing 45 n n C9 H19 8KV sing 46 n n # _atom_sites.entry_id 5UPV _atom_sites.fract_transf_matrix[1][1] 0.011347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 8KV A 1 602 551 8KV G36 . D 4 FMT A 1 603 553 FMT FMT . E 5 EDO A 1 604 554 EDO EDO . F 4 FMT A 1 605 555 FMT FMT . G 5 EDO A 1 606 557 EDO EDO . H 5 EDO A 1 607 558 EDO EDO . I 4 FMT A 1 608 559 FMT FMT . J 6 HOH A 1 701 25 HOH HOH . J 6 HOH A 2 702 140 HOH HOH . J 6 HOH A 3 703 142 HOH HOH . J 6 HOH A 4 704 149 HOH HOH . J 6 HOH A 5 705 36 HOH HOH . J 6 HOH A 6 706 116 HOH HOH . J 6 HOH A 7 707 47 HOH HOH . J 6 HOH A 8 708 119 HOH HOH . J 6 HOH A 9 709 135 HOH HOH . J 6 HOH A 10 710 10 HOH HOH . J 6 HOH A 11 711 90 HOH HOH . J 6 HOH A 12 712 78 HOH HOH . J 6 HOH A 13 713 58 HOH HOH . J 6 HOH A 14 714 103 HOH HOH . J 6 HOH A 15 715 70 HOH HOH . J 6 HOH A 16 716 87 HOH HOH . J 6 HOH A 17 717 134 HOH HOH . J 6 HOH A 18 718 146 HOH HOH . J 6 HOH A 19 719 13 HOH HOH . J 6 HOH A 20 720 24 HOH HOH . J 6 HOH A 21 721 66 HOH HOH . J 6 HOH A 22 722 39 HOH HOH . J 6 HOH A 23 723 35 HOH HOH . J 6 HOH A 24 724 81 HOH HOH . J 6 HOH A 25 725 44 HOH HOH . J 6 HOH A 26 726 84 HOH HOH . J 6 HOH A 27 727 50 HOH HOH . J 6 HOH A 28 728 157 HOH HOH . J 6 HOH A 29 729 3 HOH HOH . J 6 HOH A 30 730 4 HOH HOH . J 6 HOH A 31 731 108 HOH HOH . J 6 HOH A 32 732 77 HOH HOH . J 6 HOH A 33 733 52 HOH HOH . J 6 HOH A 34 734 16 HOH HOH . J 6 HOH A 35 735 54 HOH HOH . J 6 HOH A 36 736 153 HOH HOH . J 6 HOH A 37 737 53 HOH HOH . J 6 HOH A 38 738 26 HOH HOH . J 6 HOH A 39 739 123 HOH HOH . J 6 HOH A 40 740 158 HOH HOH . J 6 HOH A 41 741 55 HOH HOH . J 6 HOH A 42 742 156 HOH HOH . J 6 HOH A 43 743 65 HOH HOH . J 6 HOH A 44 744 113 HOH HOH . J 6 HOH A 45 745 100 HOH HOH . J 6 HOH A 46 746 33 HOH HOH . J 6 HOH A 47 747 7 HOH HOH . J 6 HOH A 48 748 62 HOH HOH . J 6 HOH A 49 749 1 HOH HOH . J 6 HOH A 50 750 117 HOH HOH . J 6 HOH A 51 751 107 HOH HOH . J 6 HOH A 52 752 136 HOH HOH . J 6 HOH A 53 753 42 HOH HOH . J 6 HOH A 54 754 145 HOH HOH . J 6 HOH A 55 755 138 HOH HOH . J 6 HOH A 56 756 2 HOH HOH . J 6 HOH A 57 757 15 HOH HOH . J 6 HOH A 58 758 14 HOH HOH . J 6 HOH A 59 759 11 HOH HOH . J 6 HOH A 60 760 99 HOH HOH . J 6 HOH A 61 761 97 HOH HOH . J 6 HOH A 62 762 68 HOH HOH . J 6 HOH A 63 763 34 HOH HOH . J 6 HOH A 64 764 111 HOH HOH . J 6 HOH A 65 765 46 HOH HOH . J 6 HOH A 66 766 92 HOH HOH . J 6 HOH A 67 767 159 HOH HOH . J 6 HOH A 68 768 20 HOH HOH . J 6 HOH A 69 769 56 HOH HOH . J 6 HOH A 70 770 31 HOH HOH . J 6 HOH A 71 771 76 HOH HOH . J 6 HOH A 72 772 93 HOH HOH . J 6 HOH A 73 773 109 HOH HOH . J 6 HOH A 74 774 9 HOH HOH . J 6 HOH A 75 775 37 HOH HOH . J 6 HOH A 76 776 80 HOH HOH . J 6 HOH A 77 777 32 HOH HOH . J 6 HOH A 78 778 79 HOH HOH . J 6 HOH A 79 779 41 HOH HOH . J 6 HOH A 80 780 40 HOH HOH . J 6 HOH A 81 781 38 HOH HOH . J 6 HOH A 82 782 61 HOH HOH . J 6 HOH A 83 783 72 HOH HOH . J 6 HOH A 84 784 144 HOH HOH . J 6 HOH A 85 785 19 HOH HOH . J 6 HOH A 86 786 85 HOH HOH . J 6 HOH A 87 787 49 HOH HOH . J 6 HOH A 88 788 23 HOH HOH . J 6 HOH A 89 789 6 HOH HOH . J 6 HOH A 90 790 5 HOH HOH . J 6 HOH A 91 791 89 HOH HOH . J 6 HOH A 92 792 121 HOH HOH . J 6 HOH A 93 793 120 HOH HOH . J 6 HOH A 94 794 12 HOH HOH . J 6 HOH A 95 795 155 HOH HOH . J 6 HOH A 96 796 101 HOH HOH . J 6 HOH A 97 797 67 HOH HOH . J 6 HOH A 98 798 21 HOH HOH . J 6 HOH A 99 799 154 HOH HOH . J 6 HOH A 100 800 151 HOH HOH . J 6 HOH A 101 801 59 HOH HOH . J 6 HOH A 102 802 69 HOH HOH . J 6 HOH A 103 803 98 HOH HOH . J 6 HOH A 104 804 95 HOH HOH . J 6 HOH A 105 805 57 HOH HOH . J 6 HOH A 106 806 45 HOH HOH . J 6 HOH A 107 807 82 HOH HOH . J 6 HOH A 108 808 110 HOH HOH . J 6 HOH A 109 809 27 HOH HOH . J 6 HOH A 110 810 147 HOH HOH . J 6 HOH A 111 811 63 HOH HOH . J 6 HOH A 112 812 114 HOH HOH . J 6 HOH A 113 813 28 HOH HOH . J 6 HOH A 114 814 83 HOH HOH . J 6 HOH A 115 815 94 HOH HOH . J 6 HOH A 116 816 60 HOH HOH . J 6 HOH A 117 817 128 HOH HOH . J 6 HOH A 118 818 115 HOH HOH . J 6 HOH A 119 819 74 HOH HOH . J 6 HOH A 120 820 18 HOH HOH . J 6 HOH A 121 821 73 HOH HOH . J 6 HOH A 122 822 129 HOH HOH . J 6 HOH A 123 823 48 HOH HOH . J 6 HOH A 124 824 17 HOH HOH . J 6 HOH A 125 825 22 HOH HOH . J 6 HOH A 126 826 30 HOH HOH . J 6 HOH A 127 827 137 HOH HOH . J 6 HOH A 128 828 64 HOH HOH . J 6 HOH A 129 829 43 HOH HOH . J 6 HOH A 130 830 112 HOH HOH . J 6 HOH A 131 831 75 HOH HOH . J 6 HOH A 132 832 29 HOH HOH . J 6 HOH A 133 833 51 HOH HOH . J 6 HOH A 134 834 105 HOH HOH . J 6 HOH A 135 835 8 HOH HOH . J 6 HOH A 136 836 118 HOH HOH . J 6 HOH A 137 837 148 HOH HOH . J 6 HOH A 138 838 102 HOH HOH . J 6 HOH A 139 839 143 HOH HOH . J 6 HOH A 140 840 139 HOH HOH . J 6 HOH A 141 841 86 HOH HOH . J 6 HOH A 142 842 133 HOH HOH . J 6 HOH A 143 843 91 HOH HOH . J 6 HOH A 144 844 127 HOH HOH . J 6 HOH A 145 845 125 HOH HOH . J 6 HOH A 146 846 130 HOH HOH . J 6 HOH A 147 847 131 HOH HOH . J 6 HOH A 148 848 152 HOH HOH . J 6 HOH A 149 849 150 HOH HOH . J 6 HOH A 150 850 132 HOH HOH . J 6 HOH A 151 851 106 HOH HOH . J 6 HOH A 152 852 124 HOH HOH . J 6 HOH A 153 853 122 HOH HOH . J 6 HOH A 154 854 126 HOH HOH . J 6 HOH A 155 855 71 HOH HOH . J 6 HOH A 156 856 96 HOH HOH . J 6 HOH A 157 857 88 HOH HOH . J 6 HOH A 158 858 104 HOH HOH . J 6 HOH A 159 859 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 8KV . . . C 3 -1.761 30.627 -0.427 1 33.22 ? C8 8KV 602 A 1 HETATM 2 C C5 8KV . . . C 3 -0.131 30.355 4.2 1 36.38 ? C5 8KV 602 A 1 HETATM 3 C C6 8KV . . . C 3 -0.715 29.765 5.461 1 31.03 ? C6 8KV 602 A 1 HETATM 4 N N1 8KV . . . C 3 -0.955 29.994 3.066 1 37.72 ? N1 8KV 602 A 1 HETATM 5 C C2 8KV . . . C 3 3.624 29.967 4.426 1 38.5 ? C2 8KV 602 A 1 HETATM 6 N N2 8KV . . . C 3 -1.749 30.213 0.92 1 33.1 ? N2 8KV 602 A 1 HETATM 7 N N3 8KV . . . C 3 7.328 27.714 3.233 1 43.08 ? N3 8KV 602 A 1 HETATM 8 C C4 8KV . . . C 3 1.268 29.856 4.03 1 36.2 ? C4 8KV 602 A 1 HETATM 9 O O2 8KV . . . C 3 -0.17 31.684 1.762 1 32.81 ? O2 8KV 602 A 1 HETATM 10 C C7 8KV . . . C 3 -0.904 30.713 1.892 1 36.51 ? C7 8KV 602 A 1 HETATM 11 C C1 8KV . . . C 3 4.319 31.772 5.586 1 44.71 ? C1 8KV 602 A 1 HETATM 12 C C10 8KV . . . C 3 -2.166 30.062 -2.717 1 32.74 ? C10 8KV 602 A 1 HETATM 13 C C11 8KV . . . C 3 -1.854 31.336 -3.111 1 35 ? C11 8KV 602 A 1 HETATM 14 C C12 8KV . . . C 3 -1.511 32.262 -2.151 1 34.83 ? C12 8KV 602 A 1 HETATM 15 C C13 8KV . . . C 3 -1.467 31.913 -0.819 1 36.97 ? C13 8KV 602 A 1 HETATM 16 C C14 8KV . . . C 3 1.5 28.749 3.246 1 38.89 ? C14 8KV 602 A 1 HETATM 17 C C15 8KV . . . C 3 2.764 28.24 3.043 1 40.29 ? C15 8KV 602 A 1 HETATM 18 C C16 8KV . . . C 3 3.839 28.85 3.647 1 40.88 ? C16 8KV 602 A 1 HETATM 19 C C17 8KV . . . C 3 5.166 28.333 3.405 1 43.9 ? C17 8KV 602 A 1 HETATM 20 C C18 8KV . . . C 3 6.427 28.472 3.946 1 45.37 ? C18 8KV 602 A 1 HETATM 21 C C19 8KV . . . C 3 6.591 27.165 2.29 1 44.23 ? C19 8KV 602 A 1 HETATM 22 C C3 8KV . . . C 3 2.352 30.479 4.627 1 37.34 ? C3 8KV 602 A 1 HETATM 23 C C9 8KV . . . C 3 -2.13 29.715 -1.387 1 34.04 ? C9 8KV 602 A 1 HETATM 24 O O1 8KV . . . C 3 4.741 30.547 5.005 1 41.83 ? O1 8KV 602 A 1 HETATM 25 O O3 8KV . . . C 3 5.268 27.502 2.331 1 45.33 ? O3 8KV 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #