data_5UPV
#
_model_server_result.job_id            pOBuiXTGnYdRuffqpzk6lw 
_model_server_result.datetime_utc      '2024-11-30 03:38:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5upv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":607}' 
#
_entry.id    5UPV 
#
_exptl.entry_id    5UPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UPV 
_cell.length_a            88.128 
_cell.length_b            88.128 
_cell.length_c            84.364 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 G N N 
? 5 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 129 n n 
C1 C2 EDO sing 130 n n 
C1 H11 EDO sing 131 n n 
C1 H12 EDO sing 132 n n 
O1 HO1 EDO sing 133 n n 
C2 O2 EDO sing 134 n n 
C2 H21 EDO sing 135 n n 
C2 H22 EDO sing 136 n n 
O2 HO2 EDO sing 137 n n 
#
_atom_sites.entry_id                     5UPV 
_atom_sites.fract_transf_matrix[1][1]    0.011347 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMP A 1 601 550 IMP IMP . 
C 3 8KV A 1 602 551 8KV G36 . 
D 4 FMT A 1 603 553 FMT FMT . 
E 5 EDO A 1 604 554 EDO EDO . 
F 4 FMT A 1 605 555 FMT FMT . 
G 5 EDO A 1 606 557 EDO EDO . 
H 5 EDO A 1 607 558 EDO EDO . 
I 4 FMT A 1 608 559 FMT FMT . 
J 6 HOH A 1 701 25 HOH HOH . 
J 6 HOH A 2 702 140 HOH HOH . 
J 6 HOH A 3 703 142 HOH HOH . 
J 6 HOH A 4 704 149 HOH HOH . 
J 6 HOH A 5 705 36 HOH HOH . 
J 6 HOH A 6 706 116 HOH HOH . 
J 6 HOH A 7 707 47 HOH HOH . 
J 6 HOH A 8 708 119 HOH HOH . 
J 6 HOH A 9 709 135 HOH HOH . 
J 6 HOH A 10 710 10 HOH HOH . 
J 6 HOH A 11 711 90 HOH HOH . 
J 6 HOH A 12 712 78 HOH HOH . 
J 6 HOH A 13 713 58 HOH HOH . 
J 6 HOH A 14 714 103 HOH HOH . 
J 6 HOH A 15 715 70 HOH HOH . 
J 6 HOH A 16 716 87 HOH HOH . 
J 6 HOH A 17 717 134 HOH HOH . 
J 6 HOH A 18 718 146 HOH HOH . 
J 6 HOH A 19 719 13 HOH HOH . 
J 6 HOH A 20 720 24 HOH HOH . 
J 6 HOH A 21 721 66 HOH HOH . 
J 6 HOH A 22 722 39 HOH HOH . 
J 6 HOH A 23 723 35 HOH HOH . 
J 6 HOH A 24 724 81 HOH HOH . 
J 6 HOH A 25 725 44 HOH HOH . 
J 6 HOH A 26 726 84 HOH HOH . 
J 6 HOH A 27 727 50 HOH HOH . 
J 6 HOH A 28 728 157 HOH HOH . 
J 6 HOH A 29 729 3 HOH HOH . 
J 6 HOH A 30 730 4 HOH HOH . 
J 6 HOH A 31 731 108 HOH HOH . 
J 6 HOH A 32 732 77 HOH HOH . 
J 6 HOH A 33 733 52 HOH HOH . 
J 6 HOH A 34 734 16 HOH HOH . 
J 6 HOH A 35 735 54 HOH HOH . 
J 6 HOH A 36 736 153 HOH HOH . 
J 6 HOH A 37 737 53 HOH HOH . 
J 6 HOH A 38 738 26 HOH HOH . 
J 6 HOH A 39 739 123 HOH HOH . 
J 6 HOH A 40 740 158 HOH HOH . 
J 6 HOH A 41 741 55 HOH HOH . 
J 6 HOH A 42 742 156 HOH HOH . 
J 6 HOH A 43 743 65 HOH HOH . 
J 6 HOH A 44 744 113 HOH HOH . 
J 6 HOH A 45 745 100 HOH HOH . 
J 6 HOH A 46 746 33 HOH HOH . 
J 6 HOH A 47 747 7 HOH HOH . 
J 6 HOH A 48 748 62 HOH HOH . 
J 6 HOH A 49 749 1 HOH HOH . 
J 6 HOH A 50 750 117 HOH HOH . 
J 6 HOH A 51 751 107 HOH HOH . 
J 6 HOH A 52 752 136 HOH HOH . 
J 6 HOH A 53 753 42 HOH HOH . 
J 6 HOH A 54 754 145 HOH HOH . 
J 6 HOH A 55 755 138 HOH HOH . 
J 6 HOH A 56 756 2 HOH HOH . 
J 6 HOH A 57 757 15 HOH HOH . 
J 6 HOH A 58 758 14 HOH HOH . 
J 6 HOH A 59 759 11 HOH HOH . 
J 6 HOH A 60 760 99 HOH HOH . 
J 6 HOH A 61 761 97 HOH HOH . 
J 6 HOH A 62 762 68 HOH HOH . 
J 6 HOH A 63 763 34 HOH HOH . 
J 6 HOH A 64 764 111 HOH HOH . 
J 6 HOH A 65 765 46 HOH HOH . 
J 6 HOH A 66 766 92 HOH HOH . 
J 6 HOH A 67 767 159 HOH HOH . 
J 6 HOH A 68 768 20 HOH HOH . 
J 6 HOH A 69 769 56 HOH HOH . 
J 6 HOH A 70 770 31 HOH HOH . 
J 6 HOH A 71 771 76 HOH HOH . 
J 6 HOH A 72 772 93 HOH HOH . 
J 6 HOH A 73 773 109 HOH HOH . 
J 6 HOH A 74 774 9 HOH HOH . 
J 6 HOH A 75 775 37 HOH HOH . 
J 6 HOH A 76 776 80 HOH HOH . 
J 6 HOH A 77 777 32 HOH HOH . 
J 6 HOH A 78 778 79 HOH HOH . 
J 6 HOH A 79 779 41 HOH HOH . 
J 6 HOH A 80 780 40 HOH HOH . 
J 6 HOH A 81 781 38 HOH HOH . 
J 6 HOH A 82 782 61 HOH HOH . 
J 6 HOH A 83 783 72 HOH HOH . 
J 6 HOH A 84 784 144 HOH HOH . 
J 6 HOH A 85 785 19 HOH HOH . 
J 6 HOH A 86 786 85 HOH HOH . 
J 6 HOH A 87 787 49 HOH HOH . 
J 6 HOH A 88 788 23 HOH HOH . 
J 6 HOH A 89 789 6 HOH HOH . 
J 6 HOH A 90 790 5 HOH HOH . 
J 6 HOH A 91 791 89 HOH HOH . 
J 6 HOH A 92 792 121 HOH HOH . 
J 6 HOH A 93 793 120 HOH HOH . 
J 6 HOH A 94 794 12 HOH HOH . 
J 6 HOH A 95 795 155 HOH HOH . 
J 6 HOH A 96 796 101 HOH HOH . 
J 6 HOH A 97 797 67 HOH HOH . 
J 6 HOH A 98 798 21 HOH HOH . 
J 6 HOH A 99 799 154 HOH HOH . 
J 6 HOH A 100 800 151 HOH HOH . 
J 6 HOH A 101 801 59 HOH HOH . 
J 6 HOH A 102 802 69 HOH HOH . 
J 6 HOH A 103 803 98 HOH HOH . 
J 6 HOH A 104 804 95 HOH HOH . 
J 6 HOH A 105 805 57 HOH HOH . 
J 6 HOH A 106 806 45 HOH HOH . 
J 6 HOH A 107 807 82 HOH HOH . 
J 6 HOH A 108 808 110 HOH HOH . 
J 6 HOH A 109 809 27 HOH HOH . 
J 6 HOH A 110 810 147 HOH HOH . 
J 6 HOH A 111 811 63 HOH HOH . 
J 6 HOH A 112 812 114 HOH HOH . 
J 6 HOH A 113 813 28 HOH HOH . 
J 6 HOH A 114 814 83 HOH HOH . 
J 6 HOH A 115 815 94 HOH HOH . 
J 6 HOH A 116 816 60 HOH HOH . 
J 6 HOH A 117 817 128 HOH HOH . 
J 6 HOH A 118 818 115 HOH HOH . 
J 6 HOH A 119 819 74 HOH HOH . 
J 6 HOH A 120 820 18 HOH HOH . 
J 6 HOH A 121 821 73 HOH HOH . 
J 6 HOH A 122 822 129 HOH HOH . 
J 6 HOH A 123 823 48 HOH HOH . 
J 6 HOH A 124 824 17 HOH HOH . 
J 6 HOH A 125 825 22 HOH HOH . 
J 6 HOH A 126 826 30 HOH HOH . 
J 6 HOH A 127 827 137 HOH HOH . 
J 6 HOH A 128 828 64 HOH HOH . 
J 6 HOH A 129 829 43 HOH HOH . 
J 6 HOH A 130 830 112 HOH HOH . 
J 6 HOH A 131 831 75 HOH HOH . 
J 6 HOH A 132 832 29 HOH HOH . 
J 6 HOH A 133 833 51 HOH HOH . 
J 6 HOH A 134 834 105 HOH HOH . 
J 6 HOH A 135 835 8 HOH HOH . 
J 6 HOH A 136 836 118 HOH HOH . 
J 6 HOH A 137 837 148 HOH HOH . 
J 6 HOH A 138 838 102 HOH HOH . 
J 6 HOH A 139 839 143 HOH HOH . 
J 6 HOH A 140 840 139 HOH HOH . 
J 6 HOH A 141 841 86 HOH HOH . 
J 6 HOH A 142 842 133 HOH HOH . 
J 6 HOH A 143 843 91 HOH HOH . 
J 6 HOH A 144 844 127 HOH HOH . 
J 6 HOH A 145 845 125 HOH HOH . 
J 6 HOH A 146 846 130 HOH HOH . 
J 6 HOH A 147 847 131 HOH HOH . 
J 6 HOH A 148 848 152 HOH HOH . 
J 6 HOH A 149 849 150 HOH HOH . 
J 6 HOH A 150 850 132 HOH HOH . 
J 6 HOH A 151 851 106 HOH HOH . 
J 6 HOH A 152 852 124 HOH HOH . 
J 6 HOH A 153 853 122 HOH HOH . 
J 6 HOH A 154 854 126 HOH HOH . 
J 6 HOH A 155 855 71 HOH HOH . 
J 6 HOH A 156 856 96 HOH HOH . 
J 6 HOH A 157 857 88 HOH HOH . 
J 6 HOH A 158 858 104 HOH HOH . 
J 6 HOH A 159 859 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 5 4.756 25.422 -0.887 1 51.11 ? C1 EDO 607 A 1 
HETATM 2 O O1 EDO . . . H 5 5.81 25.995 -1.653 1 52.78 ? O1 EDO 607 A 1 
HETATM 3 C C2 EDO . . . H 5 5.37 24.384 0.043 1 47.42 ? C2 EDO 607 A 1 
HETATM 4 O O2 EDO . . . H 5 4.362 23.416 0.352 1 40.54 ? O2 EDO 607 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#