data_5UPX # _model_server_result.job_id 7K2sV4vs021ReiSluCTKQA _model_server_result.datetime_utc '2024-10-28 02:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5upx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5UPX # _exptl.entry_id 5UPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UPX _cell.length_a 93.148 _cell.length_b 93.148 _cell.length_c 95.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 93.148 -93.148 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -93.148 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 93.148 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5UPX _atom_sites.fract_transf_matrix[1][1] 0.010736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XMP A 1 500 500 XMP XMP . C 3 GOL A 1 501 501 GOL GOL . D 4 HOH A 1 601 132 HOH HOH . D 4 HOH A 2 602 44 HOH HOH . D 4 HOH A 3 603 122 HOH HOH . D 4 HOH A 4 604 144 HOH HOH . D 4 HOH A 5 605 26 HOH HOH . D 4 HOH A 6 606 47 HOH HOH . D 4 HOH A 7 607 128 HOH HOH . D 4 HOH A 8 608 16 HOH HOH . D 4 HOH A 9 609 64 HOH HOH . D 4 HOH A 10 610 19 HOH HOH . D 4 HOH A 11 611 99 HOH HOH . D 4 HOH A 12 612 131 HOH HOH . D 4 HOH A 13 613 1 HOH HOH . D 4 HOH A 14 614 4 HOH HOH . D 4 HOH A 15 615 83 HOH HOH . D 4 HOH A 16 616 120 HOH HOH . D 4 HOH A 17 617 28 HOH HOH . D 4 HOH A 18 618 17 HOH HOH . D 4 HOH A 19 619 35 HOH HOH . D 4 HOH A 20 620 133 HOH HOH . D 4 HOH A 21 621 88 HOH HOH . D 4 HOH A 22 622 33 HOH HOH . D 4 HOH A 23 623 82 HOH HOH . D 4 HOH A 24 624 79 HOH HOH . D 4 HOH A 25 625 95 HOH HOH . D 4 HOH A 26 626 96 HOH HOH . D 4 HOH A 27 627 71 HOH HOH . D 4 HOH A 28 628 58 HOH HOH . D 4 HOH A 29 629 121 HOH HOH . D 4 HOH A 30 630 114 HOH HOH . D 4 HOH A 31 631 118 HOH HOH . D 4 HOH A 32 632 54 HOH HOH . D 4 HOH A 33 633 36 HOH HOH . D 4 HOH A 34 634 18 HOH HOH . D 4 HOH A 35 635 76 HOH HOH . D 4 HOH A 36 636 29 HOH HOH . D 4 HOH A 37 637 49 HOH HOH . D 4 HOH A 38 638 117 HOH HOH . D 4 HOH A 39 639 15 HOH HOH . D 4 HOH A 40 640 124 HOH HOH . D 4 HOH A 41 641 43 HOH HOH . D 4 HOH A 42 642 81 HOH HOH . D 4 HOH A 43 643 2 HOH HOH . D 4 HOH A 44 644 11 HOH HOH . D 4 HOH A 45 645 23 HOH HOH . D 4 HOH A 46 646 65 HOH HOH . D 4 HOH A 47 647 69 HOH HOH . D 4 HOH A 48 648 57 HOH HOH . D 4 HOH A 49 649 78 HOH HOH . D 4 HOH A 50 650 85 HOH HOH . D 4 HOH A 51 651 52 HOH HOH . D 4 HOH A 52 652 108 HOH HOH . D 4 HOH A 53 653 116 HOH HOH . D 4 HOH A 54 654 7 HOH HOH . D 4 HOH A 55 655 67 HOH HOH . D 4 HOH A 56 656 13 HOH HOH . D 4 HOH A 57 657 97 HOH HOH . D 4 HOH A 58 658 30 HOH HOH . D 4 HOH A 59 659 31 HOH HOH . D 4 HOH A 60 660 127 HOH HOH . D 4 HOH A 61 661 14 HOH HOH . D 4 HOH A 62 662 22 HOH HOH . D 4 HOH A 63 663 72 HOH HOH . D 4 HOH A 64 664 84 HOH HOH . D 4 HOH A 65 665 77 HOH HOH . D 4 HOH A 66 666 10 HOH HOH . D 4 HOH A 67 667 39 HOH HOH . D 4 HOH A 68 668 60 HOH HOH . D 4 HOH A 69 669 8 HOH HOH . D 4 HOH A 70 670 25 HOH HOH . D 4 HOH A 71 671 93 HOH HOH . D 4 HOH A 72 672 73 HOH HOH . D 4 HOH A 73 673 74 HOH HOH . D 4 HOH A 74 674 53 HOH HOH . D 4 HOH A 75 675 87 HOH HOH . D 4 HOH A 76 676 32 HOH HOH . D 4 HOH A 77 677 6 HOH HOH . D 4 HOH A 78 678 38 HOH HOH . D 4 HOH A 79 679 143 HOH HOH . D 4 HOH A 80 680 5 HOH HOH . D 4 HOH A 81 681 27 HOH HOH . D 4 HOH A 82 682 102 HOH HOH . D 4 HOH A 83 683 119 HOH HOH . D 4 HOH A 84 684 55 HOH HOH . D 4 HOH A 85 685 24 HOH HOH . D 4 HOH A 86 686 20 HOH HOH . D 4 HOH A 87 687 94 HOH HOH . D 4 HOH A 88 688 80 HOH HOH . D 4 HOH A 89 689 86 HOH HOH . D 4 HOH A 90 690 46 HOH HOH . D 4 HOH A 91 691 48 HOH HOH . D 4 HOH A 92 692 112 HOH HOH . D 4 HOH A 93 693 101 HOH HOH . D 4 HOH A 94 694 61 HOH HOH . D 4 HOH A 95 695 125 HOH HOH . D 4 HOH A 96 696 90 HOH HOH . D 4 HOH A 97 697 45 HOH HOH . D 4 HOH A 98 698 89 HOH HOH . D 4 HOH A 99 699 9 HOH HOH . D 4 HOH A 100 700 104 HOH HOH . D 4 HOH A 101 701 115 HOH HOH . D 4 HOH A 102 702 21 HOH HOH . D 4 HOH A 103 703 123 HOH HOH . D 4 HOH A 104 704 59 HOH HOH . D 4 HOH A 105 705 91 HOH HOH . D 4 HOH A 106 706 12 HOH HOH . D 4 HOH A 107 707 135 HOH HOH . D 4 HOH A 108 708 3 HOH HOH . D 4 HOH A 109 709 63 HOH HOH . D 4 HOH A 110 710 106 HOH HOH . D 4 HOH A 111 711 70 HOH HOH . D 4 HOH A 112 712 111 HOH HOH . D 4 HOH A 113 713 56 HOH HOH . D 4 HOH A 114 714 145 HOH HOH . D 4 HOH A 115 715 62 HOH HOH . D 4 HOH A 116 716 141 HOH HOH . D 4 HOH A 117 717 34 HOH HOH . D 4 HOH A 118 718 107 HOH HOH . D 4 HOH A 119 719 37 HOH HOH . D 4 HOH A 120 720 137 HOH HOH . D 4 HOH A 121 721 100 HOH HOH . D 4 HOH A 122 722 138 HOH HOH . D 4 HOH A 123 723 40 HOH HOH . D 4 HOH A 124 724 109 HOH HOH . D 4 HOH A 125 725 50 HOH HOH . D 4 HOH A 126 726 66 HOH HOH . D 4 HOH A 127 727 42 HOH HOH . D 4 HOH A 128 728 41 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 103 HOH HOH . D 4 HOH A 132 732 68 HOH HOH . D 4 HOH A 133 733 110 HOH HOH . D 4 HOH A 134 734 75 HOH HOH . D 4 HOH A 135 735 92 HOH HOH . D 4 HOH A 136 736 105 HOH HOH . D 4 HOH A 137 737 139 HOH HOH . D 4 HOH A 138 738 140 HOH HOH . D 4 HOH A 139 739 142 HOH HOH . D 4 HOH A 140 740 113 HOH HOH . D 4 HOH A 141 741 98 HOH HOH . D 4 HOH A 142 742 126 HOH HOH . D 4 HOH A 143 743 51 HOH HOH . D 4 HOH A 144 744 136 HOH HOH . D 4 HOH A 145 745 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 15.258 -52.12 3.981 1 69.88 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 3 14.263 -53.085 4.231 1 70.6 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 3 15.695 -52.179 2.521 1 68.54 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 3 15.933 -53.516 2.133 1 74.99 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 3 16.958 -51.347 2.332 1 57.11 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 3 17.118 -51.05 0.964 1 52.06 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #