data_5UPY # _model_server_result.job_id b99UWeLEXTpxlCNJhmcecQ _model_server_result.datetime_utc '2025-04-13 05:43:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5upy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5UPY # _exptl.entry_id 5UPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-(naphthalen-1-yloxy)-N-[2-(pyridin-4-yl)-1,3-benzoxazol-5-yl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UPY _cell.length_a 174.165 _cell.length_b 174.165 _cell.length_c 174.165 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 4 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H19 N3 O3' _chem_comp.formula_weight 409.437 _chem_comp.id Q21 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-(naphthalen-1-yloxy)-N-[2-(pyridin-4-yl)-1,3-benzoxazol-5-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 Q21 sing 337 n n C12 C11 Q21 doub 338 n y C12 C7 Q21 sing 339 n y C11 C10 Q21 sing 340 n y C7 O1 Q21 sing 341 n y C7 C8 Q21 doub 342 n y O1 C1 Q21 sing 343 n y N3 C10 Q21 sing 344 n n N3 C13 Q21 sing 345 n n C10 C9 Q21 doub 346 n y C14 C13 Q21 sing 347 n n C14 O3 Q21 sing 348 n n C6 C5 Q21 doub 349 n y C6 C2 Q21 sing 350 n y C8 C9 Q21 sing 351 n y C8 N1 Q21 sing 352 n y C13 O2 Q21 doub 353 n n C1 C2 Q21 sing 354 n n C1 N1 Q21 doub 355 n y C5 N2 Q21 sing 356 n y C2 C3 Q21 doub 357 n y N2 C4 Q21 doub 358 n y C3 C4 Q21 sing 359 n y O3 C16 Q21 sing 360 n n C17 C16 Q21 doub 361 n y C17 C18 Q21 sing 362 n y C16 C21 Q21 sing 363 n y C18 C19 Q21 doub 364 n y C21 C46 Q21 doub 365 n y C21 C20 Q21 sing 366 n y C46 C45 Q21 sing 367 n y C19 C20 Q21 sing 368 n y C20 C43 Q21 doub 369 n y C45 C44 Q21 doub 370 n y C43 C44 Q21 sing 371 n y C14 H1 Q21 sing 372 n n C15 H2 Q21 sing 373 n n C15 H3 Q21 sing 374 n n C15 H4 Q21 sing 375 n n C17 H5 Q21 sing 376 n n C18 H6 Q21 sing 377 n n C19 H7 Q21 sing 378 n n C46 H8 Q21 sing 379 n n C45 H9 Q21 sing 380 n n C44 H10 Q21 sing 381 n n C43 H11 Q21 sing 382 n n N3 H12 Q21 sing 383 n n C11 H13 Q21 sing 384 n n C12 H14 Q21 sing 385 n n C9 H15 Q21 sing 386 n n C3 H16 Q21 sing 387 n n C4 H17 Q21 sing 388 n n C5 H18 Q21 sing 389 n n C6 H19 Q21 sing 390 n n # _atom_sites.entry_id 5UPY _atom_sites.fract_transf_matrix[1][1] 0.005742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 500 500 IMP IMP . C 3 Q21 A 1 501 501 Q21 Q21 . D 4 CL A 1 502 502 CL CL . E 5 GOL A 1 503 503 GOL GOL . F 5 GOL A 1 504 504 GOL GOL . G 5 GOL A 1 505 505 GOL GOL . H 6 EDO A 1 506 506 EDO EDO . I 6 EDO A 1 507 507 EDO EDO . J 6 EDO A 1 508 508 EDO EDO . K 7 HOH A 1 601 91 HOH HOH . K 7 HOH A 2 602 95 HOH HOH . K 7 HOH A 3 603 61 HOH HOH . K 7 HOH A 4 604 86 HOH HOH . K 7 HOH A 5 605 53 HOH HOH . K 7 HOH A 6 606 76 HOH HOH . K 7 HOH A 7 607 20 HOH HOH . K 7 HOH A 8 608 81 HOH HOH . K 7 HOH A 9 609 12 HOH HOH . K 7 HOH A 10 610 7 HOH HOH . K 7 HOH A 11 611 93 HOH HOH . K 7 HOH A 12 612 101 HOH HOH . K 7 HOH A 13 613 1 HOH HOH . K 7 HOH A 14 614 16 HOH HOH . K 7 HOH A 15 615 89 HOH HOH . K 7 HOH A 16 616 39 HOH HOH . K 7 HOH A 17 617 44 HOH HOH . K 7 HOH A 18 618 100 HOH HOH . K 7 HOH A 19 619 66 HOH HOH . K 7 HOH A 20 620 70 HOH HOH . K 7 HOH A 21 621 14 HOH HOH . K 7 HOH A 22 622 23 HOH HOH . K 7 HOH A 23 623 21 HOH HOH . K 7 HOH A 24 624 60 HOH HOH . K 7 HOH A 25 625 36 HOH HOH . K 7 HOH A 26 626 24 HOH HOH . K 7 HOH A 27 627 78 HOH HOH . K 7 HOH A 28 628 28 HOH HOH . K 7 HOH A 29 629 32 HOH HOH . K 7 HOH A 30 630 34 HOH HOH . K 7 HOH A 31 631 48 HOH HOH . K 7 HOH A 32 632 43 HOH HOH . K 7 HOH A 33 633 50 HOH HOH . K 7 HOH A 34 634 13 HOH HOH . K 7 HOH A 35 635 4 HOH HOH . K 7 HOH A 36 636 75 HOH HOH . K 7 HOH A 37 637 71 HOH HOH . K 7 HOH A 38 638 19 HOH HOH . K 7 HOH A 39 639 104 HOH HOH . K 7 HOH A 40 640 62 HOH HOH . K 7 HOH A 41 641 74 HOH HOH . K 7 HOH A 42 642 18 HOH HOH . K 7 HOH A 43 643 58 HOH HOH . K 7 HOH A 44 644 42 HOH HOH . K 7 HOH A 45 645 73 HOH HOH . K 7 HOH A 46 646 29 HOH HOH . K 7 HOH A 47 647 2 HOH HOH . K 7 HOH A 48 648 35 HOH HOH . K 7 HOH A 49 649 67 HOH HOH . K 7 HOH A 50 650 64 HOH HOH . K 7 HOH A 51 651 69 HOH HOH . K 7 HOH A 52 652 37 HOH HOH . K 7 HOH A 53 653 6 HOH HOH . K 7 HOH A 54 654 51 HOH HOH . K 7 HOH A 55 655 46 HOH HOH . K 7 HOH A 56 656 27 HOH HOH . K 7 HOH A 57 657 99 HOH HOH . K 7 HOH A 58 658 45 HOH HOH . K 7 HOH A 59 659 82 HOH HOH . K 7 HOH A 60 660 10 HOH HOH . K 7 HOH A 61 661 15 HOH HOH . K 7 HOH A 62 662 30 HOH HOH . K 7 HOH A 63 663 49 HOH HOH . K 7 HOH A 64 664 90 HOH HOH . K 7 HOH A 65 665 17 HOH HOH . K 7 HOH A 66 666 22 HOH HOH . K 7 HOH A 67 667 25 HOH HOH . K 7 HOH A 68 668 59 HOH HOH . K 7 HOH A 69 669 9 HOH HOH . K 7 HOH A 70 670 33 HOH HOH . K 7 HOH A 71 671 54 HOH HOH . K 7 HOH A 72 672 55 HOH HOH . K 7 HOH A 73 673 41 HOH HOH . K 7 HOH A 74 674 92 HOH HOH . K 7 HOH A 75 675 87 HOH HOH . K 7 HOH A 76 676 5 HOH HOH . K 7 HOH A 77 677 31 HOH HOH . K 7 HOH A 78 678 3 HOH HOH . K 7 HOH A 79 679 68 HOH HOH . K 7 HOH A 80 680 84 HOH HOH . K 7 HOH A 81 681 52 HOH HOH . K 7 HOH A 82 682 26 HOH HOH . K 7 HOH A 83 683 40 HOH HOH . K 7 HOH A 84 684 56 HOH HOH . K 7 HOH A 85 685 11 HOH HOH . K 7 HOH A 86 686 63 HOH HOH . K 7 HOH A 87 687 72 HOH HOH . K 7 HOH A 88 688 65 HOH HOH . K 7 HOH A 89 689 8 HOH HOH . K 7 HOH A 90 690 103 HOH HOH . K 7 HOH A 91 691 38 HOH HOH . K 7 HOH A 92 692 85 HOH HOH . K 7 HOH A 93 693 97 HOH HOH . K 7 HOH A 94 694 83 HOH HOH . K 7 HOH A 95 695 80 HOH HOH . K 7 HOH A 96 696 57 HOH HOH . K 7 HOH A 97 697 79 HOH HOH . K 7 HOH A 98 698 96 HOH HOH . K 7 HOH A 99 699 102 HOH HOH . K 7 HOH A 100 700 88 HOH HOH . K 7 HOH A 101 701 77 HOH HOH . K 7 HOH A 102 702 47 HOH HOH . K 7 HOH A 103 703 98 HOH HOH . K 7 HOH A 104 704 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 Q21 . . . C 3 61.6 29.487 10.405 1 40.18 ? O2 Q21 501 A 1 HETATM 2 C C13 Q21 . . . C 3 61.472 28.756 9.434 1 40.75 ? C13 Q21 501 A 1 HETATM 3 C C14 Q21 . . . C 3 60.205 27.969 9.252 1 43.64 ? C14 Q21 501 A 1 HETATM 4 C C15 Q21 . . . C 3 59.139 28.868 8.64 1 43.44 ? C15 Q21 501 A 1 HETATM 5 O O3 Q21 . . . C 3 59.753 27.491 10.521 1 46.79 ? O3 Q21 501 A 1 HETATM 6 C C16 Q21 . . . C 3 60.381 26.444 11.15 1 46.97 ? C16 Q21 501 A 1 HETATM 7 C C17 Q21 . . . C 3 61.32 25.66 10.484 1 46.34 ? C17 Q21 501 A 1 HETATM 8 C C18 Q21 . . . C 3 61.955 24.612 11.142 1 44.93 ? C18 Q21 501 A 1 HETATM 9 C C19 Q21 . . . C 3 61.656 24.346 12.473 1 44.57 ? C19 Q21 501 A 1 HETATM 10 C C21 Q21 . . . C 3 60.083 26.176 12.478 1 46.66 ? C21 Q21 501 A 1 HETATM 11 C C46 Q21 . . . C 3 59.151 26.964 13.14 1 45.86 ? C46 Q21 501 A 1 HETATM 12 C C45 Q21 . . . C 3 58.852 26.695 14.47 1 47.6 ? C45 Q21 501 A 1 HETATM 13 C C44 Q21 . . . C 3 59.481 25.644 15.133 1 47.67 ? C44 Q21 501 A 1 HETATM 14 C C43 Q21 . . . C 3 60.418 24.858 14.47 1 45.82 ? C43 Q21 501 A 1 HETATM 15 C C20 Q21 . . . C 3 60.718 25.126 13.14 1 46.32 ? C20 Q21 501 A 1 HETATM 16 N N3 Q21 . . . C 3 62.375 28.562 8.468 1 38.31 ? N3 Q21 501 A 1 HETATM 17 C C10 Q21 . . . C 3 63.613 29.109 8.35 1 36.89 ? C10 Q21 501 A 1 HETATM 18 C C11 Q21 . . . C 3 64.419 28.611 7.321 1 36.29 ? C11 Q21 501 A 1 HETATM 19 C C12 Q21 . . . C 3 65.708 29.092 7.114 1 35.17 ? C12 Q21 501 A 1 HETATM 20 C C7 Q21 . . . C 3 66.165 30.086 7.965 1 36.19 ? C7 Q21 501 A 1 HETATM 21 C C8 Q21 . . . C 3 65.392 30.594 8.989 1 35.64 ? C8 Q21 501 A 1 HETATM 22 C C9 Q21 . . . C 3 64.103 30.112 9.194 1 34.22 ? C9 Q21 501 A 1 HETATM 23 O O1 Q21 . . . C 3 67.346 30.655 7.922 1 35.72 ? O1 Q21 501 A 1 HETATM 24 C C1 Q21 . . . C 3 67.391 31.579 8.935 1 36.38 ? C1 Q21 501 A 1 HETATM 25 N N1 Q21 . . . C 3 66.185 31.53 9.583 1 35.47 ? N1 Q21 501 A 1 HETATM 26 C C2 Q21 . . . C 3 68.46 32.409 9.241 1 36.23 ? C2 Q21 501 A 1 HETATM 27 C C3 Q21 . . . C 3 68.373 33.304 10.299 1 35.23 ? C3 Q21 501 A 1 HETATM 28 C C4 Q21 . . . C 3 69.465 34.114 10.58 1 34.92 ? C4 Q21 501 A 1 HETATM 29 N N2 Q21 . . . C 3 70.579 34.045 9.836 1 35.3 ? N2 Q21 501 A 1 HETATM 30 C C5 Q21 . . . C 3 70.685 33.192 8.807 1 33.46 ? C5 Q21 501 A 1 HETATM 31 C C6 Q21 . . . C 3 69.627 32.349 8.488 1 34.34 ? C6 Q21 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #