data_5UPY
#
_model_server_result.job_id            DBbBrd_KUQQmrE-o1QmZUw 
_model_server_result.datetime_utc      '2024-11-10 01:23:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5upy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
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_entry.id    5UPY 
#
_exptl.entry_id    5UPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UPY 
_cell.length_a            174.165 
_cell.length_b            174.165 
_cell.length_c            174.165 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        211 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 
4 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5UPY 
_atom_sites.fract_transf_matrix[1][1]    0.005742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMP A 1 500 500 IMP IMP . 
C 3 Q21 A 1 501 501 Q21 Q21 . 
D 4 CL A 1 502 502 CL CL . 
E 5 GOL A 1 503 503 GOL GOL . 
F 5 GOL A 1 504 504 GOL GOL . 
G 5 GOL A 1 505 505 GOL GOL . 
H 6 EDO A 1 506 506 EDO EDO . 
I 6 EDO A 1 507 507 EDO EDO . 
J 6 EDO A 1 508 508 EDO EDO . 
K 7 HOH A 1 601 91 HOH HOH . 
K 7 HOH A 2 602 95 HOH HOH . 
K 7 HOH A 3 603 61 HOH HOH . 
K 7 HOH A 4 604 86 HOH HOH . 
K 7 HOH A 5 605 53 HOH HOH . 
K 7 HOH A 6 606 76 HOH HOH . 
K 7 HOH A 7 607 20 HOH HOH . 
K 7 HOH A 8 608 81 HOH HOH . 
K 7 HOH A 9 609 12 HOH HOH . 
K 7 HOH A 10 610 7 HOH HOH . 
K 7 HOH A 11 611 93 HOH HOH . 
K 7 HOH A 12 612 101 HOH HOH . 
K 7 HOH A 13 613 1 HOH HOH . 
K 7 HOH A 14 614 16 HOH HOH . 
K 7 HOH A 15 615 89 HOH HOH . 
K 7 HOH A 16 616 39 HOH HOH . 
K 7 HOH A 17 617 44 HOH HOH . 
K 7 HOH A 18 618 100 HOH HOH . 
K 7 HOH A 19 619 66 HOH HOH . 
K 7 HOH A 20 620 70 HOH HOH . 
K 7 HOH A 21 621 14 HOH HOH . 
K 7 HOH A 22 622 23 HOH HOH . 
K 7 HOH A 23 623 21 HOH HOH . 
K 7 HOH A 24 624 60 HOH HOH . 
K 7 HOH A 25 625 36 HOH HOH . 
K 7 HOH A 26 626 24 HOH HOH . 
K 7 HOH A 27 627 78 HOH HOH . 
K 7 HOH A 28 628 28 HOH HOH . 
K 7 HOH A 29 629 32 HOH HOH . 
K 7 HOH A 30 630 34 HOH HOH . 
K 7 HOH A 31 631 48 HOH HOH . 
K 7 HOH A 32 632 43 HOH HOH . 
K 7 HOH A 33 633 50 HOH HOH . 
K 7 HOH A 34 634 13 HOH HOH . 
K 7 HOH A 35 635 4 HOH HOH . 
K 7 HOH A 36 636 75 HOH HOH . 
K 7 HOH A 37 637 71 HOH HOH . 
K 7 HOH A 38 638 19 HOH HOH . 
K 7 HOH A 39 639 104 HOH HOH . 
K 7 HOH A 40 640 62 HOH HOH . 
K 7 HOH A 41 641 74 HOH HOH . 
K 7 HOH A 42 642 18 HOH HOH . 
K 7 HOH A 43 643 58 HOH HOH . 
K 7 HOH A 44 644 42 HOH HOH . 
K 7 HOH A 45 645 73 HOH HOH . 
K 7 HOH A 46 646 29 HOH HOH . 
K 7 HOH A 47 647 2 HOH HOH . 
K 7 HOH A 48 648 35 HOH HOH . 
K 7 HOH A 49 649 67 HOH HOH . 
K 7 HOH A 50 650 64 HOH HOH . 
K 7 HOH A 51 651 69 HOH HOH . 
K 7 HOH A 52 652 37 HOH HOH . 
K 7 HOH A 53 653 6 HOH HOH . 
K 7 HOH A 54 654 51 HOH HOH . 
K 7 HOH A 55 655 46 HOH HOH . 
K 7 HOH A 56 656 27 HOH HOH . 
K 7 HOH A 57 657 99 HOH HOH . 
K 7 HOH A 58 658 45 HOH HOH . 
K 7 HOH A 59 659 82 HOH HOH . 
K 7 HOH A 60 660 10 HOH HOH . 
K 7 HOH A 61 661 15 HOH HOH . 
K 7 HOH A 62 662 30 HOH HOH . 
K 7 HOH A 63 663 49 HOH HOH . 
K 7 HOH A 64 664 90 HOH HOH . 
K 7 HOH A 65 665 17 HOH HOH . 
K 7 HOH A 66 666 22 HOH HOH . 
K 7 HOH A 67 667 25 HOH HOH . 
K 7 HOH A 68 668 59 HOH HOH . 
K 7 HOH A 69 669 9 HOH HOH . 
K 7 HOH A 70 670 33 HOH HOH . 
K 7 HOH A 71 671 54 HOH HOH . 
K 7 HOH A 72 672 55 HOH HOH . 
K 7 HOH A 73 673 41 HOH HOH . 
K 7 HOH A 74 674 92 HOH HOH . 
K 7 HOH A 75 675 87 HOH HOH . 
K 7 HOH A 76 676 5 HOH HOH . 
K 7 HOH A 77 677 31 HOH HOH . 
K 7 HOH A 78 678 3 HOH HOH . 
K 7 HOH A 79 679 68 HOH HOH . 
K 7 HOH A 80 680 84 HOH HOH . 
K 7 HOH A 81 681 52 HOH HOH . 
K 7 HOH A 82 682 26 HOH HOH . 
K 7 HOH A 83 683 40 HOH HOH . 
K 7 HOH A 84 684 56 HOH HOH . 
K 7 HOH A 85 685 11 HOH HOH . 
K 7 HOH A 86 686 63 HOH HOH . 
K 7 HOH A 87 687 72 HOH HOH . 
K 7 HOH A 88 688 65 HOH HOH . 
K 7 HOH A 89 689 8 HOH HOH . 
K 7 HOH A 90 690 103 HOH HOH . 
K 7 HOH A 91 691 38 HOH HOH . 
K 7 HOH A 92 692 85 HOH HOH . 
K 7 HOH A 93 693 97 HOH HOH . 
K 7 HOH A 94 694 83 HOH HOH . 
K 7 HOH A 95 695 80 HOH HOH . 
K 7 HOH A 96 696 57 HOH HOH . 
K 7 HOH A 97 697 79 HOH HOH . 
K 7 HOH A 98 698 96 HOH HOH . 
K 7 HOH A 99 699 102 HOH HOH . 
K 7 HOH A 100 700 88 HOH HOH . 
K 7 HOH A 101 701 77 HOH HOH . 
K 7 HOH A 102 702 47 HOH HOH . 
K 7 HOH A 103 703 98 HOH HOH . 
K 7 HOH A 104 704 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 76.468 26.844 33.99 1 65.57 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . G 5 76.624 27.939 33.113 1 66.23 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . G 5 75.087 26.903 34.637 1 62.67 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . G 5 74.345 27.941 34.038 1 61.3 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . G 5 74.365 25.572 34.436 1 60.15 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . G 5 74.219 24.886 35.663 1 56.53 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#