data_5UQF # _model_server_result.job_id gNwaf2IBPsZkdLt4lIaQJg _model_server_result.datetime_utc '2024-11-07 16:36:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 5UQF # _exptl.entry_id 5UQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UQF _cell.length_a 118.526 _cell.length_b 118.526 _cell.length_c 451.298 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA octameric 8 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M,GA 1 1,2,4,6 B,N,O,P,Q,R,S,T,U,V,W,X,HA 2 1,3,5,7 C,Y,Z,AA,BA,CA,DA,EA,FA,IA 3 1,3,5,7 A,D,E,F,G,H,I,J,K,L,M,GA 4 1,2,4,6,8,9,10,11 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -118.526 118.526 0 4 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 118.526 0 6 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -118.526 0 0 8 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 10 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 11 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 N N N ? 2 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 217 A GLY 296 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 A O GLY 219 A GLY 298 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 A O CYS 222 A CYS 301 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc4 A O GLU 386 A GLU 465 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc5 A O SER 387 A SER 466 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc6 A O HIS 388 A HIS 467 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc7 F K K . A K 502 1_555 GA O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc8 B O GLY 217 B GLY 296 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc9 B O GLY 219 B GLY 298 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc10 B O CYS 222 B CYS 301 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc11 B O GLU 386 B GLU 465 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc12 B O SER 387 B SER 466 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc13 B O HIS 388 B HIS 467 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc14 C O GLY 217 C GLY 296 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc15 C O GLY 219 C GLY 298 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc16 C O CYS 222 C CYS 301 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc17 C O GLU 386 C GLU 465 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc18 C O SER 387 C SER 466 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc19 C O HIS 388 C HIS 467 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc20 AA K K . C K 503 1_555 IA O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.249 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 247 n n P O2P IMP sing 248 n n P O3P IMP sing 249 n n P O5' IMP sing 250 n n O2P HOP2 IMP sing 251 n n O3P HOP3 IMP sing 252 n n O5' C5' IMP sing 253 n n C5' C4' IMP sing 254 n n C5' "H5'1" IMP sing 255 n n C5' "H5'2" IMP sing 256 n n C4' O4' IMP sing 257 n n C4' C3' IMP sing 258 n n C4' H4' IMP sing 259 n n O4' C1' IMP sing 260 n n C3' O3' IMP sing 261 n n C3' C2' IMP sing 262 n n C3' H3' IMP sing 263 n n O3' HO3' IMP sing 264 n n C2' O2' IMP sing 265 n n C2' C1' IMP sing 266 n n C2' H2' IMP sing 267 n n O2' HO2' IMP sing 268 n n C1' N9 IMP sing 269 n n C1' H1' IMP sing 270 n n N9 C8 IMP sing 271 n y N9 C4 IMP sing 272 n y C8 N7 IMP doub 273 n y C8 H8 IMP sing 274 n n N7 C5 IMP sing 275 n y C5 C6 IMP sing 276 n n C5 C4 IMP doub 277 n y C6 O6 IMP doub 278 n n C6 N1 IMP sing 279 n n N1 C2 IMP sing 280 n n N1 HN1 IMP sing 281 n n C2 N3 IMP doub 282 n n C2 H2 IMP sing 283 n n N3 C4 IMP sing 284 n n # _atom_sites.entry_id 5UQF _atom_sites.fract_transf_matrix[1][1] 0.008437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IMP A 1 500 500 IMP IMP . E 3 8KY A 1 501 501 8KY 225 . F 4 K A 1 502 502 K K . G 5 SO4 A 1 503 503 SO4 SO4 . H 5 SO4 A 1 504 504 SO4 SO4 . I 5 SO4 A 1 505 505 SO4 SO4 . J 6 EDO A 1 506 506 EDO EDO . K 6 EDO A 1 507 507 EDO EDO . L 6 EDO A 1 508 508 EDO EDO . M 6 EDO A 1 509 509 EDO EDO . N 2 IMP B 1 500 500 IMP IMP . O 3 8KY B 1 501 501 8KY 225 . P 4 K B 1 502 502 K K . Q 5 SO4 B 1 503 503 SO4 SO4 . R 5 SO4 B 1 504 504 SO4 SO4 . S 5 SO4 B 1 505 505 SO4 SO4 . T 5 SO4 B 1 506 506 SO4 SO4 . U 5 SO4 B 1 507 507 SO4 SO4 . V 7 GOL B 1 508 508 GOL GOL . W 6 EDO B 1 509 509 EDO EDO . X 6 EDO B 1 510 510 EDO EDO . Y 2 IMP C 1 501 500 IMP IMP . Z 3 8KY C 1 502 501 8KY 225 . AA 4 K C 1 503 502 K K . BA 5 SO4 C 1 504 503 SO4 SO4 . CA 5 SO4 C 1 505 504 SO4 SO4 . DA 7 GOL C 1 506 506 GOL GOL . EA 8 CL C 1 507 507 CL CL . FA 8 CL C 1 508 508 CL CL . GA 9 HOH A 1 601 27 HOH HOH . GA 9 HOH A 2 602 69 HOH HOH . GA 9 HOH A 3 603 8 HOH HOH . GA 9 HOH A 4 604 12 HOH HOH . GA 9 HOH A 5 605 59 HOH HOH . GA 9 HOH A 6 606 24 HOH HOH . GA 9 HOH A 7 607 31 HOH HOH . GA 9 HOH A 8 608 20 HOH HOH . GA 9 HOH A 9 609 67 HOH HOH . GA 9 HOH A 10 610 29 HOH HOH . GA 9 HOH A 11 611 30 HOH HOH . GA 9 HOH A 12 612 15 HOH HOH . GA 9 HOH A 13 613 36 HOH HOH . GA 9 HOH A 14 614 11 HOH HOH . GA 9 HOH A 15 615 32 HOH HOH . GA 9 HOH A 16 616 25 HOH HOH . GA 9 HOH A 17 617 22 HOH HOH . GA 9 HOH A 18 618 28 HOH HOH . GA 9 HOH A 19 619 19 HOH HOH . GA 9 HOH A 20 620 26 HOH HOH . GA 9 HOH A 21 621 65 HOH HOH . GA 9 HOH A 22 622 5 HOH HOH . GA 9 HOH A 23 623 18 HOH HOH . GA 9 HOH A 24 624 7 HOH HOH . GA 9 HOH A 25 625 4 HOH HOH . GA 9 HOH A 26 626 23 HOH HOH . GA 9 HOH A 27 627 51 HOH HOH . GA 9 HOH A 28 628 57 HOH HOH . HA 9 HOH B 1 601 42 HOH HOH . HA 9 HOH B 2 602 58 HOH HOH . HA 9 HOH B 3 603 62 HOH HOH . HA 9 HOH B 4 604 45 HOH HOH . HA 9 HOH B 5 605 10 HOH HOH . HA 9 HOH B 6 606 40 HOH HOH . HA 9 HOH B 7 607 37 HOH HOH . HA 9 HOH B 8 608 43 HOH HOH . HA 9 HOH B 9 609 54 HOH HOH . HA 9 HOH B 10 610 16 HOH HOH . HA 9 HOH B 11 611 13 HOH HOH . HA 9 HOH B 12 612 55 HOH HOH . HA 9 HOH B 13 613 34 HOH HOH . HA 9 HOH B 14 614 44 HOH HOH . HA 9 HOH B 15 615 21 HOH HOH . HA 9 HOH B 16 616 41 HOH HOH . HA 9 HOH B 17 617 33 HOH HOH . HA 9 HOH B 18 618 46 HOH HOH . HA 9 HOH B 19 619 14 HOH HOH . HA 9 HOH B 20 620 47 HOH HOH . HA 9 HOH B 21 621 56 HOH HOH . HA 9 HOH B 22 622 63 HOH HOH . HA 9 HOH B 23 623 38 HOH HOH . HA 9 HOH B 24 624 61 HOH HOH . HA 9 HOH B 25 625 9 HOH HOH . HA 9 HOH B 26 626 60 HOH HOH . HA 9 HOH B 27 627 39 HOH HOH . IA 9 HOH C 1 601 70 HOH HOH . IA 9 HOH C 2 602 52 HOH HOH . IA 9 HOH C 3 603 49 HOH HOH . IA 9 HOH C 4 604 2 HOH HOH . IA 9 HOH C 5 605 17 HOH HOH . IA 9 HOH C 6 606 6 HOH HOH . IA 9 HOH C 7 607 66 HOH HOH . IA 9 HOH C 8 608 68 HOH HOH . IA 9 HOH C 9 609 53 HOH HOH . IA 9 HOH C 10 610 3 HOH HOH . IA 9 HOH C 11 611 50 HOH HOH . IA 9 HOH C 12 612 1 HOH HOH . IA 9 HOH C 13 613 48 HOH HOH . IA 9 HOH C 14 614 64 HOH HOH . IA 9 HOH C 15 615 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . D 2 -6.383 21.607 19.358 1 46.05 ? P IMP 500 A 1 HETATM 2 O O1P IMP . . . D 2 -6.29 21.668 17.872 1 31.44 ? O1P IMP 500 A 1 HETATM 3 O O2P IMP . . . D 2 -7.757 21.957 19.804 1 42.23 ? O2P IMP 500 A 1 HETATM 4 O O3P IMP . . . D 2 -6.058 20.24 19.846 1 37.79 ? O3P IMP 500 A 1 HETATM 5 O O5' IMP . . . D 2 -5.358 22.647 19.988 1 37.71 ? O5' IMP 500 A 1 HETATM 6 C C5' IMP . . . D 2 -5.502 24.042 19.771 1 33.59 ? C5' IMP 500 A 1 HETATM 7 C C4' IMP . . . D 2 -4.758 24.771 20.874 1 34.38 ? C4' IMP 500 A 1 HETATM 8 O O4' IMP . . . D 2 -3.36 24.578 20.734 1 33.99 ? O4' IMP 500 A 1 HETATM 9 C C3' IMP . . . D 2 -4.96 26.267 20.841 1 32.3 ? C3' IMP 500 A 1 HETATM 10 O O3' IMP . . . D 2 -6.026 26.635 21.707 1 34.16 ? O3' IMP 500 A 1 HETATM 11 C C2' IMP . . . D 2 -3.67 26.813 21.391 1 34.37 ? C2' IMP 500 A 1 HETATM 12 O O2' IMP . . . D 2 -3.84 26.979 22.793 1 40.48 ? O2' IMP 500 A 1 HETATM 13 C C1' IMP . . . D 2 -2.646 25.723 21.183 1 34.75 ? C1' IMP 500 A 1 HETATM 14 N N9 IMP . . . D 2 -1.631 26.072 20.163 1 40.67 ? N9 IMP 500 A 1 HETATM 15 C C8 IMP . . . D 2 -1.82 26.757 19.035 1 41.59 ? C8 IMP 500 A 1 HETATM 16 N N7 IMP . . . D 2 -0.648 26.848 18.379 1 38.24 ? N7 IMP 500 A 1 HETATM 17 C C5 IMP . . . D 2 0.28 26.205 19.106 1 42.59 ? C5 IMP 500 A 1 HETATM 18 C C6 IMP . . . D 2 1.634 25.961 18.951 1 46.42 ? C6 IMP 500 A 1 HETATM 19 O O6 IMP . . . D 2 2.254 26.372 17.958 1 50.4 ? O6 IMP 500 A 1 HETATM 20 N N1 IMP . . . D 2 2.291 25.265 19.888 1 44.57 ? N1 IMP 500 A 1 HETATM 21 C C2 IMP . . . D 2 1.658 24.812 20.965 1 41.86 ? C2 IMP 500 A 1 HETATM 22 N N3 IMP . . . D 2 0.357 25.032 21.138 1 44.69 ? N3 IMP 500 A 1 HETATM 23 C C4 IMP . . . D 2 -0.351 25.721 20.226 1 42.99 ? C4 IMP 500 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 596 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #