data_5UQF # _model_server_result.job_id jlbcTZ9Gw2YQVY6eU_xqRQ _model_server_result.datetime_utc '2024-11-25 09:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":509}' # _entry.id 5UQF # _exptl.entry_id 5UQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UQF _cell.length_a 118.526 _cell.length_b 118.526 _cell.length_c 451.298 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA octameric 8 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M,GA 1 1,2,4,6 B,N,O,P,Q,R,S,T,U,V,W,X,HA 2 1,3,5,7 C,Y,Z,AA,BA,CA,DA,EA,FA,IA 3 1,3,5,7 A,D,E,F,G,H,I,J,K,L,M,GA 4 1,2,4,6,8,9,10,11 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -118.526 118.526 0 4 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 118.526 0 6 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -118.526 0 0 8 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 10 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 11 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 W N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 217 A GLY 296 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 A O GLY 219 A GLY 298 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 A O CYS 222 A CYS 301 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc4 A O GLU 386 A GLU 465 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc5 A O SER 387 A SER 466 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc6 A O HIS 388 A HIS 467 1_555 F K K . A K 502 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc7 F K K . A K 502 1_555 GA O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc8 B O GLY 217 B GLY 296 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc9 B O GLY 219 B GLY 298 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc10 B O CYS 222 B CYS 301 1_555 P K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc11 B O GLU 386 B GLU 465 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc12 B O SER 387 B SER 466 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc13 B O HIS 388 B HIS 467 1_555 P K K . B K 502 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc14 C O GLY 217 C GLY 296 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc15 C O GLY 219 C GLY 298 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc16 C O CYS 222 C CYS 301 1_555 AA K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc17 C O GLU 386 C GLU 465 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc18 C O SER 387 C SER 466 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc19 C O HIS 388 C HIS 467 1_555 AA K K . C K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc20 AA K K . C K 503 1_555 IA O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.249 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 135 n n C1 C2 EDO sing 136 n n C1 H11 EDO sing 137 n n C1 H12 EDO sing 138 n n O1 HO1 EDO sing 139 n n C2 O2 EDO sing 140 n n C2 H21 EDO sing 141 n n C2 H22 EDO sing 142 n n O2 HO2 EDO sing 143 n n # _atom_sites.entry_id 5UQF _atom_sites.fract_transf_matrix[1][1] 0.008437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IMP A 1 500 500 IMP IMP . E 3 8KY A 1 501 501 8KY 225 . F 4 K A 1 502 502 K K . G 5 SO4 A 1 503 503 SO4 SO4 . H 5 SO4 A 1 504 504 SO4 SO4 . I 5 SO4 A 1 505 505 SO4 SO4 . J 6 EDO A 1 506 506 EDO EDO . K 6 EDO A 1 507 507 EDO EDO . L 6 EDO A 1 508 508 EDO EDO . M 6 EDO A 1 509 509 EDO EDO . N 2 IMP B 1 500 500 IMP IMP . O 3 8KY B 1 501 501 8KY 225 . P 4 K B 1 502 502 K K . Q 5 SO4 B 1 503 503 SO4 SO4 . R 5 SO4 B 1 504 504 SO4 SO4 . S 5 SO4 B 1 505 505 SO4 SO4 . T 5 SO4 B 1 506 506 SO4 SO4 . U 5 SO4 B 1 507 507 SO4 SO4 . V 7 GOL B 1 508 508 GOL GOL . W 6 EDO B 1 509 509 EDO EDO . X 6 EDO B 1 510 510 EDO EDO . Y 2 IMP C 1 501 500 IMP IMP . Z 3 8KY C 1 502 501 8KY 225 . AA 4 K C 1 503 502 K K . BA 5 SO4 C 1 504 503 SO4 SO4 . CA 5 SO4 C 1 505 504 SO4 SO4 . DA 7 GOL C 1 506 506 GOL GOL . EA 8 CL C 1 507 507 CL CL . FA 8 CL C 1 508 508 CL CL . GA 9 HOH A 1 601 27 HOH HOH . GA 9 HOH A 2 602 69 HOH HOH . GA 9 HOH A 3 603 8 HOH HOH . GA 9 HOH A 4 604 12 HOH HOH . GA 9 HOH A 5 605 59 HOH HOH . GA 9 HOH A 6 606 24 HOH HOH . GA 9 HOH A 7 607 31 HOH HOH . GA 9 HOH A 8 608 20 HOH HOH . GA 9 HOH A 9 609 67 HOH HOH . GA 9 HOH A 10 610 29 HOH HOH . GA 9 HOH A 11 611 30 HOH HOH . GA 9 HOH A 12 612 15 HOH HOH . GA 9 HOH A 13 613 36 HOH HOH . GA 9 HOH A 14 614 11 HOH HOH . GA 9 HOH A 15 615 32 HOH HOH . GA 9 HOH A 16 616 25 HOH HOH . GA 9 HOH A 17 617 22 HOH HOH . GA 9 HOH A 18 618 28 HOH HOH . GA 9 HOH A 19 619 19 HOH HOH . GA 9 HOH A 20 620 26 HOH HOH . GA 9 HOH A 21 621 65 HOH HOH . GA 9 HOH A 22 622 5 HOH HOH . GA 9 HOH A 23 623 18 HOH HOH . GA 9 HOH A 24 624 7 HOH HOH . GA 9 HOH A 25 625 4 HOH HOH . GA 9 HOH A 26 626 23 HOH HOH . GA 9 HOH A 27 627 51 HOH HOH . GA 9 HOH A 28 628 57 HOH HOH . HA 9 HOH B 1 601 42 HOH HOH . HA 9 HOH B 2 602 58 HOH HOH . HA 9 HOH B 3 603 62 HOH HOH . HA 9 HOH B 4 604 45 HOH HOH . HA 9 HOH B 5 605 10 HOH HOH . HA 9 HOH B 6 606 40 HOH HOH . HA 9 HOH B 7 607 37 HOH HOH . HA 9 HOH B 8 608 43 HOH HOH . HA 9 HOH B 9 609 54 HOH HOH . HA 9 HOH B 10 610 16 HOH HOH . HA 9 HOH B 11 611 13 HOH HOH . HA 9 HOH B 12 612 55 HOH HOH . HA 9 HOH B 13 613 34 HOH HOH . HA 9 HOH B 14 614 44 HOH HOH . HA 9 HOH B 15 615 21 HOH HOH . HA 9 HOH B 16 616 41 HOH HOH . HA 9 HOH B 17 617 33 HOH HOH . HA 9 HOH B 18 618 46 HOH HOH . HA 9 HOH B 19 619 14 HOH HOH . HA 9 HOH B 20 620 47 HOH HOH . HA 9 HOH B 21 621 56 HOH HOH . HA 9 HOH B 22 622 63 HOH HOH . HA 9 HOH B 23 623 38 HOH HOH . HA 9 HOH B 24 624 61 HOH HOH . HA 9 HOH B 25 625 9 HOH HOH . HA 9 HOH B 26 626 60 HOH HOH . HA 9 HOH B 27 627 39 HOH HOH . IA 9 HOH C 1 601 70 HOH HOH . IA 9 HOH C 2 602 52 HOH HOH . IA 9 HOH C 3 603 49 HOH HOH . IA 9 HOH C 4 604 2 HOH HOH . IA 9 HOH C 5 605 17 HOH HOH . IA 9 HOH C 6 606 6 HOH HOH . IA 9 HOH C 7 607 66 HOH HOH . IA 9 HOH C 8 608 68 HOH HOH . IA 9 HOH C 9 609 53 HOH HOH . IA 9 HOH C 10 610 3 HOH HOH . IA 9 HOH C 11 611 50 HOH HOH . IA 9 HOH C 12 612 1 HOH HOH . IA 9 HOH C 13 613 48 HOH HOH . IA 9 HOH C 14 614 64 HOH HOH . IA 9 HOH C 15 615 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . W 6 -35.582 53.924 110.239 1 52.48 ? C1 EDO 509 B 1 HETATM 2 O O1 EDO . . . W 6 -36.99 53.952 109.949 1 46.24 ? O1 EDO 509 B 1 HETATM 3 C C2 EDO . . . W 6 -35.25 54.753 111.475 1 54.36 ? C2 EDO 509 B 1 HETATM 4 O O2 EDO . . . W 6 -35.59 56.128 111.236 1 54.99 ? O2 EDO 509 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #