data_5UQT
#
_model_server_result.job_id            yj-k-3iq0WqJI7dURlSJTw 
_model_server_result.datetime_utc      '2024-11-23 23:06:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5uqt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    5UQT 
#
_exptl.entry_id    5UQT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.237 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UQT 
_cell.length_a            82.09 
_cell.length_b            154.81 
_cell.length_c            271.36 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UQT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 308 A ASP 288 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 B OD2 ASP 308 B ASP 288 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc3 B OG SER 538 B SER 518 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
#
_chem_comp.formula           'C15 H10 O5' 
_chem_comp.formula_weight    270.237 
_chem_comp.id                AGI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Apigenin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAG CAE AGI doub 1 n y 
CAG CAP AGI sing 2 n y 
CAE CAM AGI sing 3 n y 
CAM OAB AGI sing 4 n n 
CAM CAF AGI doub 5 n y 
CAF CAH AGI sing 6 n y 
CAH CAP AGI doub 7 n y 
CAP CAQ AGI sing 8 n n 
CAQ OAL AGI sing 9 n n 
CAQ CAJ AGI doub 10 n n 
OAL CAS AGI sing 11 n n 
CAJ CAR AGI sing 12 n n 
CAR OAA AGI doub 13 n n 
CAR CAT AGI sing 14 n n 
CAT CAS AGI doub 15 n y 
CAT CAO AGI sing 16 n y 
CAS CAK AGI sing 17 n y 
CAK CAN AGI doub 18 n y 
CAN OAC AGI sing 19 n n 
CAN CAI AGI sing 20 n y 
CAI CAO AGI doub 21 n y 
CAO OAD AGI sing 22 n n 
CAG HAG AGI sing 23 n n 
CAE HAE AGI sing 24 n n 
OAB HOAB AGI sing 25 n n 
CAF HAF AGI sing 26 n n 
CAH HAH AGI sing 27 n n 
CAJ HAJ AGI sing 28 n n 
CAK HAK AGI sing 29 n n 
OAC HOAC AGI sing 30 n n 
CAI HAI AGI sing 31 n n 
OAD HOAD AGI sing 32 n n 
#
_atom_sites.entry_id                     5UQT 
_atom_sites.fract_transf_matrix[1][1]    0.012182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003685 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 601 2 MN MN . 
D 2 MN B 1 601 1 MN MN . 
E 3 AGI B 1 602 1 AGI AGI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAG AGI . . . E 3 123.437 24.467 28.585 1 91.08 ? CAG AGI 602 B 1 
HETATM 2 C CAE AGI . . . E 3 123.348 23.911 29.86 1 89.75 ? CAE AGI 602 B 1 
HETATM 3 C CAM AGI . . . E 3 122.783 24.643 30.901 1 90.34 ? CAM AGI 602 B 1 
HETATM 4 O OAB AGI . . . E 3 122.681 24.106 32.203 1 91.52 ? OAB AGI 602 B 1 
HETATM 5 C CAF AGI . . . E 3 122.311 25.925 30.659 1 90.82 ? CAF AGI 602 B 1 
HETATM 6 C CAH AGI . . . E 3 122.404 26.475 29.384 1 91.92 ? CAH AGI 602 B 1 
HETATM 7 C CAP AGI . . . E 3 122.958 25.752 28.333 1 92.24 ? CAP AGI 602 B 1 
HETATM 8 C CAQ AGI . . . E 3 123.032 26.367 26.934 1 97.09 ? CAQ AGI 602 B 1 
HETATM 9 O OAL AGI . . . E 3 122.98 25.534 25.762 1 99.81 ? OAL AGI 602 B 1 
HETATM 10 C CAJ AGI . . . E 3 122.683 27.785 26.751 1 107.66 ? CAJ AGI 602 B 1 
HETATM 11 C CAR AGI . . . E 3 122.905 28.397 25.464 1 112.44 ? CAR AGI 602 B 1 
HETATM 12 O OAA AGI . . . E 3 123.059 29.594 25.363 1 127.54 ? OAA AGI 602 B 1 
HETATM 13 C CAT AGI . . . E 3 123.009 27.543 24.239 1 106.19 ? CAT AGI 602 B 1 
HETATM 14 C CAS AGI . . . E 3 123.055 26.145 24.391 1 101.39 ? CAS AGI 602 B 1 
HETATM 15 C CAK AGI . . . E 3 123.17 25.339 23.247 1 100.68 ? CAK AGI 602 B 1 
HETATM 16 C CAN AGI . . . E 3 123.244 25.926 21.973 1 104.6 ? CAN AGI 602 B 1 
HETATM 17 O OAC AGI . . . E 3 123.359 25.115 20.829 1 106.7 ? OAC AGI 602 B 1 
HETATM 18 C CAI AGI . . . E 3 123.202 27.325 21.826 1 106.75 ? CAI AGI 602 B 1 
HETATM 19 C CAO AGI . . . E 3 123.085 28.141 22.963 1 108.12 ? CAO AGI 602 B 1 
HETATM 20 O OAD AGI . . . E 3 123.036 29.557 22.82 1 107.87 ? OAD AGI 602 B 1 
HETATM 21 H HAG AGI . . . E 3 123.826 23.946 27.857 1 109.31 ? HAG AGI 602 B 1 
HETATM 22 H HAE AGI . . . E 3 123.682 23.009 30.023 1 107.71 ? HAE AGI 602 B 1 
HETATM 23 H HOAB AGI . . . E 3 123.29 24.484 32.729 1 109.83 ? HOAB AGI 602 B 1 
HETATM 24 H HAF AGI . . . E 3 121.915 26.443 31.385 1 109 ? HAF AGI 602 B 1 
HETATM 25 H HAH AGI . . . E 3 122.06 27.374 29.221 1 110.32 ? HAH AGI 602 B 1 
HETATM 26 H HAJ AGI . . . E 3 122.476 28.34 27.526 1 129.21 ? HAJ AGI 602 B 1 
HETATM 27 H HAK AGI . . . E 3 123.203 24.368 23.338 1 120.83 ? HAK AGI 602 B 1 
HETATM 28 H HOAC AGI . . . E 3 122.967 24.332 20.98 1 128.06 ? HOAC AGI 602 B 1 
HETATM 29 H HAI AGI . . . E 3 123.248 27.726 20.937 1 128.12 ? HAI AGI 602 B 1 
HETATM 30 H HOAD AGI . . . E 3 123.861 29.886 22.849 1 129.45 ? HOAD AGI 602 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           30 
#