data_5UR1
#
_model_server_result.job_id            7e0dmS9mpjFawHqwen9_jw 
_model_server_result.datetime_utc      '2024-11-14 19:00:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ur1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    5UR1 
#
_exptl.entry_id    5UR1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              640.56 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{1-[4-(dimethylamino)but-2-enoyl]piperidin-4-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.87 
_cell.angle_gamma         90 
_cell.entry_id            5UR1 
_cell.length_a            213.05 
_cell.length_b            51.783 
_cell.length_c            66.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UR1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C31 H35 Cl2 N7 O4' 
_chem_comp.formula_weight    640.56 
_chem_comp.id                YY9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{1-[4-(dimethylamino)but-2-enoyl]piperidin-4-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAI OAH YY9 sing 376 n n 
OAH CAE YY9 sing 377 n n 
CLL CAD YY9 sing 378 n n 
CAE CAD YY9 doub 379 n y 
CAE CAF YY9 sing 380 n y 
CAD CAC YY9 sing 381 n y 
CAF CAA YY9 doub 382 n y 
CBF CBG YY9 sing 383 n n 
CBF CBE YY9 sing 384 n n 
CBG NBH YY9 sing 385 n n 
CBM CBN YY9 doub 386 z n 
CBM CBK YY9 sing 387 n n 
CAC NAM YY9 sing 388 n n 
CAC CAB YY9 doub 389 n y 
NAM CAR YY9 sing 390 n n 
NAM CAN YY9 sing 391 n n 
CAA CAB YY9 sing 392 n y 
CAA OAG YY9 sing 393 n n 
OAW CAR YY9 doub 394 n n 
CAR NAQ YY9 sing 395 n n 
CAJ OAG YY9 sing 396 n n 
CAB CLK YY9 sing 397 n n 
NBH CBK YY9 sing 398 n n 
NBH CBI YY9 sing 399 n n 
CAN C5 YY9 sing 400 n n 
CBE NAQ YY9 sing 401 n n 
CBE CBJ YY9 sing 402 n n 
CBK OBL YY9 doub 403 n n 
NAQ C4 YY9 sing 404 n n 
C5 C4 YY9 doub 405 n y 
C5 C6 YY9 sing 406 n y 
C4 N3 YY9 sing 407 n y 
CAZ CBA YY9 doub 408 n y 
CAZ CAY YY9 sing 409 n y 
C6 N1 YY9 doub 410 n y 
CBA CBB YY9 sing 411 n y 
N3 C2 YY9 doub 412 n y 
N1 C2 YY9 sing 413 n y 
C2 NAX YY9 sing 414 n n 
CBJ CBI YY9 sing 415 n n 
NAX CAY YY9 sing 416 n n 
CAY CBD YY9 doub 417 n y 
CBB CBC YY9 doub 418 n y 
CBD CBC YY9 sing 419 n y 
CAI H1 YY9 sing 420 n n 
CAI H2 YY9 sing 421 n n 
CAI H3 YY9 sing 422 n n 
CAF H4 YY9 sing 423 n n 
CAJ H5 YY9 sing 424 n n 
CAJ H6 YY9 sing 425 n n 
CAJ H7 YY9 sing 426 n n 
CAN H8 YY9 sing 427 n n 
CAN H9 YY9 sing 428 n n 
C6 H10 YY9 sing 429 n n 
NAX H11 YY9 sing 430 n n 
CAZ H12 YY9 sing 431 n n 
CBA H13 YY9 sing 432 n n 
CBB H14 YY9 sing 433 n n 
CBC H15 YY9 sing 434 n n 
CBD H16 YY9 sing 435 n n 
CBE H17 YY9 sing 436 n n 
CBJ H18 YY9 sing 437 n n 
CBJ H19 YY9 sing 438 n n 
CBI H20 YY9 sing 439 n n 
CBI H21 YY9 sing 440 n n 
CBF H22 YY9 sing 441 n n 
CBF H23 YY9 sing 442 n n 
CBG H24 YY9 sing 443 n n 
CBG H25 YY9 sing 444 n n 
CBM H26 YY9 sing 445 n n 
CBN H28 YY9 sing 446 n n 
CBN C1 YY9 sing 447 n n 
C1 N2 YY9 sing 448 n n 
N2 C7 YY9 sing 449 n n 
N2 C8 YY9 sing 450 n n 
C1 H27 YY9 sing 451 n n 
C1 H29 YY9 sing 452 n n 
C7 H30 YY9 sing 453 n n 
C7 H31 YY9 sing 454 n n 
C7 H32 YY9 sing 455 n n 
C8 H33 YY9 sing 456 n n 
C8 H34 YY9 sing 457 n n 
C8 H35 YY9 sing 458 n n 
#
_atom_sites.entry_id                     5UR1 
_atom_sites.fract_transf_matrix[1][1]    0.004694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001424 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YY9 A 1 801 2 YY9 YY9 . 
D 2 YY9 B 1 801 1 YY9 YY9 . 
E 3 HOH A 1 901 17 HOH HOH . 
E 3 HOH A 2 902 53 HOH HOH . 
E 3 HOH A 3 903 46 HOH HOH . 
E 3 HOH A 4 904 49 HOH HOH . 
E 3 HOH A 5 905 15 HOH HOH . 
E 3 HOH A 6 906 29 HOH HOH . 
E 3 HOH A 7 907 42 HOH HOH . 
E 3 HOH A 8 908 28 HOH HOH . 
E 3 HOH A 9 909 9 HOH HOH . 
E 3 HOH A 10 910 52 HOH HOH . 
E 3 HOH A 11 911 6 HOH HOH . 
E 3 HOH A 12 912 24 HOH HOH . 
E 3 HOH A 13 913 27 HOH HOH . 
E 3 HOH A 14 914 45 HOH HOH . 
E 3 HOH A 15 915 25 HOH HOH . 
E 3 HOH A 16 916 21 HOH HOH . 
E 3 HOH A 17 917 30 HOH HOH . 
E 3 HOH A 18 918 2 HOH HOH . 
E 3 HOH A 19 919 44 HOH HOH . 
E 3 HOH A 20 920 10 HOH HOH . 
E 3 HOH A 21 921 12 HOH HOH . 
E 3 HOH A 22 922 1 HOH HOH . 
E 3 HOH A 23 923 22 HOH HOH . 
E 3 HOH A 24 924 34 HOH HOH . 
E 3 HOH A 25 925 16 HOH HOH . 
E 3 HOH A 26 926 41 HOH HOH . 
E 3 HOH A 27 927 51 HOH HOH . 
E 3 HOH A 28 928 37 HOH HOH . 
F 3 HOH B 1 901 18 HOH HOH . 
F 3 HOH B 2 902 36 HOH HOH . 
F 3 HOH B 3 903 35 HOH HOH . 
F 3 HOH B 4 904 31 HOH HOH . 
F 3 HOH B 5 905 50 HOH HOH . 
F 3 HOH B 6 906 38 HOH HOH . 
F 3 HOH B 7 907 47 HOH HOH . 
F 3 HOH B 8 908 3 HOH HOH . 
F 3 HOH B 9 909 40 HOH HOH . 
F 3 HOH B 10 910 32 HOH HOH . 
F 3 HOH B 11 911 14 HOH HOH . 
F 3 HOH B 12 912 5 HOH HOH . 
F 3 HOH B 13 913 8 HOH HOH . 
F 3 HOH B 14 914 39 HOH HOH . 
F 3 HOH B 15 915 20 HOH HOH . 
F 3 HOH B 16 916 7 HOH HOH . 
F 3 HOH B 17 917 48 HOH HOH . 
F 3 HOH B 18 918 13 HOH HOH . 
F 3 HOH B 19 919 43 HOH HOH . 
F 3 HOH B 20 920 4 HOH HOH . 
F 3 HOH B 21 921 26 HOH HOH . 
F 3 HOH B 22 922 19 HOH HOH . 
F 3 HOH B 23 923 33 HOH HOH . 
F 3 HOH B 24 924 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI YY9 . . . D 2 -41.495 10.837 27.978 1 35.87 ? CAI YY9 801 B 1 
HETATM 2 O OAH YY9 . . . D 2 -42.608 11.546 28.567 1 36.62 ? OAH YY9 801 B 1 
HETATM 3 C CAE YY9 . . . D 2 -42.784 11.428 29.913 1 34.08 ? CAE YY9 801 B 1 
HETATM 4 C CAD YY9 . . . D 2 -43.869 12.103 30.42 1 34.64 ? CAD YY9 801 B 1 
HETATM 5 CL CLL YY9 . . . D 2 -44.915 12.937 29.388 1 36.32 ? CLL YY9 801 B 1 
HETATM 6 C CAF YY9 . . . D 2 -41.963 10.732 30.768 1 33.04 ? CAF YY9 801 B 1 
HETATM 7 C CAA YY9 . . . D 2 -42.248 10.728 32.146 1 33.5 ? CAA YY9 801 B 1 
HETATM 8 O OAG YY9 . . . D 2 -41.492 10.068 33.064 1 34.14 ? OAG YY9 801 B 1 
HETATM 9 C CAJ YY9 . . . D 2 -40.401 9.283 32.565 1 33.26 ? CAJ YY9 801 B 1 
HETATM 10 C CAB YY9 . . . D 2 -43.357 11.392 32.673 1 34.38 ? CAB YY9 801 B 1 
HETATM 11 CL CLK YY9 . . . D 2 -43.567 11.259 34.429 1 36.24 ? CLK YY9 801 B 1 
HETATM 12 C CAC YY9 . . . D 2 -44.193 12.088 31.768 1 33.71 ? CAC YY9 801 B 1 
HETATM 13 N NAM YY9 . . . D 2 -45.381 12.895 32.139 1 34.08 ? NAM YY9 801 B 1 
HETATM 14 C CAR YY9 . . . D 2 -46.547 12.332 32.515 1 36.87 ? CAR YY9 801 B 1 
HETATM 15 O OAW YY9 . . . D 2 -46.649 11.139 32.265 1 39.62 ? OAW YY9 801 B 1 
HETATM 16 C CAN YY9 . . . D 2 -44.927 14.091 32.922 1 32.16 ? CAN YY9 801 B 1 
HETATM 17 C C5 YY9 . . . D 2 -46.051 14.991 33.225 1 32.42 ? C5 YY9 801 B 1 
HETATM 18 C C6 YY9 . . . D 2 -45.843 16.344 33.415 1 31.89 ? C6 YY9 801 B 1 
HETATM 19 N N1 YY9 . . . D 2 -46.913 17.162 33.743 1 32.3 ? N1 YY9 801 B 1 
HETATM 20 C C2 YY9 . . . D 2 -48.136 16.63 33.846 1 33.97 ? C2 YY9 801 B 1 
HETATM 21 N NAX YY9 . . . D 2 -49.216 17.57 34.19 1 35.01 ? NAX YY9 801 B 1 
HETATM 22 C CAY YY9 . . . D 2 -50.645 17.154 34.225 1 38.42 ? CAY YY9 801 B 1 
HETATM 23 C CAZ YY9 . . . D 2 -51.174 16.16 33.391 1 41.62 ? CAZ YY9 801 B 1 
HETATM 24 C CBA YY9 . . . D 2 -52.531 15.843 33.473 1 46.15 ? CBA YY9 801 B 1 
HETATM 25 C CBB YY9 . . . D 2 -53.356 16.497 34.377 1 46.65 ? CBB YY9 801 B 1 
HETATM 26 C CBC YY9 . . . D 2 -52.841 17.485 35.195 1 42.61 ? CBC YY9 801 B 1 
HETATM 27 C CBD YY9 . . . D 2 -51.498 17.809 35.112 1 38.97 ? CBD YY9 801 B 1 
HETATM 28 N N3 YY9 . . . D 2 -48.322 15.302 33.661 1 35.45 ? N3 YY9 801 B 1 
HETATM 29 C C4 YY9 . . . D 2 -47.315 14.48 33.337 1 34.74 ? C4 YY9 801 B 1 
HETATM 30 N NAQ YY9 . . . D 2 -47.533 13.017 33.171 1 37.69 ? NAQ YY9 801 B 1 
HETATM 31 C CBE YY9 . . . D 2 -49.002 12.761 32.935 1 42.73 ? CBE YY9 801 B 1 
HETATM 32 C CBJ YY9 . . . D 2 -49.511 11.831 34.022 1 46.35 ? CBJ YY9 801 B 1 
HETATM 33 C CBI YY9 . . . D 2 -50.971 12.125 34.201 1 50.45 ? CBI YY9 801 B 1 
HETATM 34 C CBF YY9 . . . D 2 -49.476 12.233 31.593 1 46.29 ? CBF YY9 801 B 1 
HETATM 35 C CBG YY9 . . . D 2 -50.959 11.867 31.619 1 52.55 ? CBG YY9 801 B 1 
HETATM 36 N NBH YY9 . . . D 2 -51.698 12.204 32.894 1 53.68 ? NBH YY9 801 B 1 
HETATM 37 C CBK YY9 . . . D 2 -53.027 12.567 32.957 1 58.6 ? CBK YY9 801 B 1 
HETATM 38 O OBL YY9 . . . D 2 -53.601 12.839 34.024 1 59.47 ? OBL YY9 801 B 1 
HETATM 39 C CBM YY9 . . . D 2 -53.877 12.665 31.659 1 63.98 ? CBM YY9 801 B 1 
HETATM 40 C CBN YY9 . . . D 2 -55.36 13.102 31.789 1 70 ? CBN YY9 801 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#