data_5UR4 # _model_server_result.job_id ODTqf_qAhllUJ6qpeA1x_A _model_server_result.datetime_utc '2024-12-02 12:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ur4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5UR4 # _exptl.entry_id 5UR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UR4 _cell.length_a 98.427 _cell.length_b 98.427 _cell.length_c 71.467 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5UR4 _atom_sites.fract_transf_matrix[1][1] 0.01016 _atom_sites.fract_transf_matrix[1][2] 0.005866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PYV A 1 201 300 PYV pbc . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 4 GOL GOL . F 3 GOL A 1 205 5 GOL GOL . G 3 GOL A 1 206 6 GOL GOL . H 4 HOH A 1 301 160 HOH HOH . H 4 HOH A 2 302 169 HOH HOH . H 4 HOH A 3 303 103 HOH HOH . H 4 HOH A 4 304 82 HOH HOH . H 4 HOH A 5 305 98 HOH HOH . H 4 HOH A 6 306 147 HOH HOH . H 4 HOH A 7 307 137 HOH HOH . H 4 HOH A 8 308 73 HOH HOH . H 4 HOH A 9 309 114 HOH HOH . H 4 HOH A 10 310 116 HOH HOH . H 4 HOH A 11 311 149 HOH HOH . H 4 HOH A 12 312 176 HOH HOH . H 4 HOH A 13 313 171 HOH HOH . H 4 HOH A 14 314 124 HOH HOH . H 4 HOH A 15 315 6 HOH HOH . H 4 HOH A 16 316 77 HOH HOH . H 4 HOH A 17 317 128 HOH HOH . H 4 HOH A 18 318 74 HOH HOH . H 4 HOH A 19 319 123 HOH HOH . H 4 HOH A 20 320 138 HOH HOH . H 4 HOH A 21 321 9 HOH HOH . H 4 HOH A 22 322 120 HOH HOH . H 4 HOH A 23 323 44 HOH HOH . H 4 HOH A 24 324 152 HOH HOH . H 4 HOH A 25 325 5 HOH HOH . H 4 HOH A 26 326 19 HOH HOH . H 4 HOH A 27 327 4 HOH HOH . H 4 HOH A 28 328 53 HOH HOH . H 4 HOH A 29 329 11 HOH HOH . H 4 HOH A 30 330 27 HOH HOH . H 4 HOH A 31 331 85 HOH HOH . H 4 HOH A 32 332 173 HOH HOH . H 4 HOH A 33 333 1 HOH HOH . H 4 HOH A 34 334 90 HOH HOH . H 4 HOH A 35 335 119 HOH HOH . H 4 HOH A 36 336 111 HOH HOH . H 4 HOH A 37 337 79 HOH HOH . H 4 HOH A 38 338 43 HOH HOH . H 4 HOH A 39 339 164 HOH HOH . H 4 HOH A 40 340 33 HOH HOH . H 4 HOH A 41 341 28 HOH HOH . H 4 HOH A 42 342 155 HOH HOH . H 4 HOH A 43 343 56 HOH HOH . H 4 HOH A 44 344 89 HOH HOH . H 4 HOH A 45 345 10 HOH HOH . H 4 HOH A 46 346 23 HOH HOH . H 4 HOH A 47 347 96 HOH HOH . H 4 HOH A 48 348 14 HOH HOH . H 4 HOH A 49 349 38 HOH HOH . H 4 HOH A 50 350 47 HOH HOH . H 4 HOH A 51 351 48 HOH HOH . H 4 HOH A 52 352 55 HOH HOH . H 4 HOH A 53 353 113 HOH HOH . H 4 HOH A 54 354 136 HOH HOH . H 4 HOH A 55 355 175 HOH HOH . H 4 HOH A 56 356 132 HOH HOH . H 4 HOH A 57 357 46 HOH HOH . H 4 HOH A 58 358 65 HOH HOH . H 4 HOH A 59 359 18 HOH HOH . H 4 HOH A 60 360 70 HOH HOH . H 4 HOH A 61 361 12 HOH HOH . H 4 HOH A 62 362 16 HOH HOH . H 4 HOH A 63 363 22 HOH HOH . H 4 HOH A 64 364 54 HOH HOH . H 4 HOH A 65 365 109 HOH HOH . H 4 HOH A 66 366 30 HOH HOH . H 4 HOH A 67 367 3 HOH HOH . H 4 HOH A 68 368 42 HOH HOH . H 4 HOH A 69 369 2 HOH HOH . H 4 HOH A 70 370 97 HOH HOH . H 4 HOH A 71 371 7 HOH HOH . H 4 HOH A 72 372 31 HOH HOH . H 4 HOH A 73 373 108 HOH HOH . H 4 HOH A 74 374 71 HOH HOH . H 4 HOH A 75 375 118 HOH HOH . H 4 HOH A 76 376 95 HOH HOH . H 4 HOH A 77 377 36 HOH HOH . H 4 HOH A 78 378 139 HOH HOH . H 4 HOH A 79 379 106 HOH HOH . H 4 HOH A 80 380 167 HOH HOH . H 4 HOH A 81 381 39 HOH HOH . H 4 HOH A 82 382 60 HOH HOH . H 4 HOH A 83 383 99 HOH HOH . H 4 HOH A 84 384 135 HOH HOH . H 4 HOH A 85 385 78 HOH HOH . H 4 HOH A 86 386 126 HOH HOH . H 4 HOH A 87 387 41 HOH HOH . H 4 HOH A 88 388 34 HOH HOH . H 4 HOH A 89 389 75 HOH HOH . H 4 HOH A 90 390 35 HOH HOH . H 4 HOH A 91 391 25 HOH HOH . H 4 HOH A 92 392 102 HOH HOH . H 4 HOH A 93 393 32 HOH HOH . H 4 HOH A 94 394 57 HOH HOH . H 4 HOH A 95 395 20 HOH HOH . H 4 HOH A 96 396 93 HOH HOH . H 4 HOH A 97 397 105 HOH HOH . H 4 HOH A 98 398 8 HOH HOH . H 4 HOH A 99 399 62 HOH HOH . H 4 HOH A 100 400 84 HOH HOH . H 4 HOH A 101 401 66 HOH HOH . H 4 HOH A 102 402 88 HOH HOH . H 4 HOH A 103 403 162 HOH HOH . H 4 HOH A 104 404 29 HOH HOH . H 4 HOH A 105 405 68 HOH HOH . H 4 HOH A 106 406 37 HOH HOH . H 4 HOH A 107 407 21 HOH HOH . H 4 HOH A 108 408 49 HOH HOH . H 4 HOH A 109 409 83 HOH HOH . H 4 HOH A 110 410 179 HOH HOH . H 4 HOH A 111 411 24 HOH HOH . H 4 HOH A 112 412 15 HOH HOH . H 4 HOH A 113 413 112 HOH HOH . H 4 HOH A 114 414 76 HOH HOH . H 4 HOH A 115 415 17 HOH HOH . H 4 HOH A 116 416 100 HOH HOH . H 4 HOH A 117 417 157 HOH HOH . H 4 HOH A 118 418 133 HOH HOH . H 4 HOH A 119 419 26 HOH HOH . H 4 HOH A 120 420 58 HOH HOH . H 4 HOH A 121 421 125 HOH HOH . H 4 HOH A 122 422 156 HOH HOH . H 4 HOH A 123 423 94 HOH HOH . H 4 HOH A 124 424 140 HOH HOH . H 4 HOH A 125 425 107 HOH HOH . H 4 HOH A 126 426 69 HOH HOH . H 4 HOH A 127 427 67 HOH HOH . H 4 HOH A 128 428 177 HOH HOH . H 4 HOH A 129 429 72 HOH HOH . H 4 HOH A 130 430 168 HOH HOH . H 4 HOH A 131 431 64 HOH HOH . H 4 HOH A 132 432 91 HOH HOH . H 4 HOH A 133 433 178 HOH HOH . H 4 HOH A 134 434 61 HOH HOH . H 4 HOH A 135 435 45 HOH HOH . H 4 HOH A 136 436 13 HOH HOH . H 4 HOH A 137 437 86 HOH HOH . H 4 HOH A 138 438 180 HOH HOH . H 4 HOH A 139 439 40 HOH HOH . H 4 HOH A 140 440 59 HOH HOH . H 4 HOH A 141 441 80 HOH HOH . H 4 HOH A 142 442 170 HOH HOH . H 4 HOH A 143 443 115 HOH HOH . H 4 HOH A 144 444 165 HOH HOH . H 4 HOH A 145 445 51 HOH HOH . H 4 HOH A 146 446 151 HOH HOH . H 4 HOH A 147 447 101 HOH HOH . H 4 HOH A 148 448 145 HOH HOH . H 4 HOH A 149 449 129 HOH HOH . H 4 HOH A 150 450 52 HOH HOH . H 4 HOH A 151 451 148 HOH HOH . H 4 HOH A 152 452 161 HOH HOH . H 4 HOH A 153 453 158 HOH HOH . H 4 HOH A 154 454 121 HOH HOH . H 4 HOH A 155 455 174 HOH HOH . H 4 HOH A 156 456 143 HOH HOH . H 4 HOH A 157 457 92 HOH HOH . H 4 HOH A 158 458 104 HOH HOH . H 4 HOH A 159 459 110 HOH HOH . H 4 HOH A 160 460 166 HOH HOH . H 4 HOH A 161 461 63 HOH HOH . H 4 HOH A 162 462 50 HOH HOH . H 4 HOH A 163 463 146 HOH HOH . H 4 HOH A 164 464 150 HOH HOH . H 4 HOH A 165 465 122 HOH HOH . H 4 HOH A 166 466 172 HOH HOH . H 4 HOH A 167 467 81 HOH HOH . H 4 HOH A 168 468 134 HOH HOH . H 4 HOH A 169 469 117 HOH HOH . H 4 HOH A 170 470 154 HOH HOH . H 4 HOH A 171 471 142 HOH HOH . H 4 HOH A 172 472 163 HOH HOH . H 4 HOH A 173 473 87 HOH HOH . H 4 HOH A 174 474 131 HOH HOH . H 4 HOH A 175 475 127 HOH HOH . H 4 HOH A 176 476 141 HOH HOH . H 4 HOH A 177 477 159 HOH HOH . H 4 HOH A 178 478 153 HOH HOH . H 4 HOH A 179 479 144 HOH HOH . H 4 HOH A 180 480 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -33.944 -24.603 16.617 0.98 53.15 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 3 -32.917 -23.896 15.958 0.98 56.21 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 3 -35.212 -24.522 15.778 0.98 57.06 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 3 -35.967 -25.699 15.962 0.98 63.61 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 3 -36.041 -23.34 16.255 0.98 56.1 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 3 -36.614 -23.674 17.497 0.98 58.66 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #