data_5URJ
#
_model_server_result.job_id            OYBj-c2-ued9g52z7fZh1g 
_model_server_result.datetime_utc      '2025-02-05 10:01:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5urj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2202}' 
#
_entry.id    5URJ 
#
_exptl.entry_id    5URJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              496.532 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-benzyl-3-[(2R)-2-(3-fluoropyridin-2-yl)-6-methyl-3,4-dihydro-2H-1-benzopyran-7-yl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(3H,8H)-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.5 
_cell.angle_gamma         90 
_cell.entry_id            5URJ 
_cell.length_a            144.909 
_cell.length_b            153.954 
_cell.length_c            142.474 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5URJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H25 F N4 O3' 
_chem_comp.formula_weight    496.532 
_chem_comp.id                8LS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-benzyl-3-[(2R)-2-(3-fluoropyridin-2-yl)-6-methyl-3,4-dihydro-2H-1-benzopyran-7-yl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(3H,8H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C24 8LS doub 1 n n 
C26 C24 8LS sing 2 n n 
C26 C27 8LS sing 3 n n 
C24 N16 8LS sing 4 n n 
N28 C27 8LS doub 5 n n 
N28 C29 8LS sing 6 n n 
C20 C21 8LS doub 7 n y 
C20 C19 8LS sing 8 n y 
C21 C22 8LS sing 9 n y 
C27 C14 8LS sing 10 n n 
C19 C18 8LS doub 11 n y 
O30 C29 8LS doub 12 n n 
C22 C23 8LS doub 13 n y 
C29 N12 8LS sing 14 n n 
C18 C23 8LS sing 15 n y 
C18 C17 8LS sing 16 n n 
N16 C17 8LS sing 17 n n 
N16 C15 8LS sing 18 n n 
C14 C15 8LS doub 19 n n 
C14 C13 8LS sing 20 n n 
N12 C13 8LS sing 21 n n 
N12 C11 8LS sing 22 n n 
C11 C10 8LS doub 23 n y 
C11 C2 8LS sing 24 n y 
C10 C9 8LS sing 25 n y 
C33 N32 8LS doub 26 n y 
C33 C34 8LS sing 27 n y 
C1 C2 8LS sing 28 n n 
C2 C3 8LS doub 29 n y 
N32 C31 8LS sing 30 n y 
C9 O8 8LS sing 31 n n 
C9 C4 8LS doub 32 n y 
O8 C7 8LS sing 33 n n 
C34 C35 8LS doub 34 n y 
C3 C4 8LS sing 35 n y 
C4 C5 8LS sing 36 n n 
C31 C7 8LS sing 37 n n 
C31 C36 8LS doub 38 n y 
C6 C7 8LS sing 39 n n 
C6 C5 8LS sing 40 n n 
C35 C36 8LS sing 41 n y 
C36 F37 8LS sing 42 n n 
C5 H1 8LS sing 43 n n 
C5 H2 8LS sing 44 n n 
C6 H3 8LS sing 45 n n 
C6 H4 8LS sing 46 n n 
C7 H5 8LS sing 47 n n 
C10 H6 8LS sing 48 n n 
C13 H7 8LS sing 49 n n 
C13 H8 8LS sing 50 n n 
C15 H9 8LS sing 51 n n 
C17 H10 8LS sing 52 n n 
C17 H11 8LS sing 53 n n 
C20 H12 8LS sing 54 n n 
C21 H13 8LS sing 55 n n 
C22 H14 8LS sing 56 n n 
C26 H15 8LS sing 57 n n 
C26 H16 8LS sing 58 n n 
C1 H17 8LS sing 59 n n 
C1 H18 8LS sing 60 n n 
C1 H19 8LS sing 61 n n 
C3 H20 8LS sing 62 n n 
C19 H21 8LS sing 63 n n 
C23 H22 8LS sing 64 n n 
C33 H23 8LS sing 65 n n 
C34 H24 8LS sing 66 n n 
C35 H25 8LS sing 67 n n 
#
_atom_sites.entry_id                     5URJ 
_atom_sites.fract_transf_matrix[1][1]    0.006901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004065 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008146 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 2201 2400 GOL GOL . 
C 3 8LS A 1 2202 2501 8LS LIG . 
D 4 HOH A 1 2301 9 HOH HOH . 
D 4 HOH A 2 2302 8 HOH HOH . 
D 4 HOH A 3 2303 5 HOH HOH . 
D 4 HOH A 4 2304 1 HOH HOH . 
D 4 HOH A 5 2305 14 HOH HOH . 
D 4 HOH A 6 2306 4 HOH HOH . 
D 4 HOH A 7 2307 6 HOH HOH . 
D 4 HOH A 8 2308 7 HOH HOH . 
D 4 HOH A 9 2309 3 HOH HOH . 
D 4 HOH A 10 2310 12 HOH HOH . 
D 4 HOH A 11 2311 2 HOH HOH . 
D 4 HOH A 12 2312 10 HOH HOH . 
D 4 HOH A 13 2313 11 HOH HOH . 
D 4 HOH A 14 2314 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 8LS . . . C 3 -88.78 -15.351 162.17 1 61.54 ? C4 8LS 2202 A 1 
HETATM 2 C C5 8LS . . . C 3 -87.633 -15.96 162.93 1 72.17 ? C5 8LS 2202 A 1 
HETATM 3 C C6 8LS . . . C 3 -87.397 -17.378 162.372 1 71.04 ? C6 8LS 2202 A 1 
HETATM 4 C C7 8LS . . . C 3 -88.719 -18.117 162.59 1 67.63 ? C7 8LS 2202 A 1 
HETATM 5 C C10 8LS . . . C 3 -90.751 -15.665 160.881 1 66 ? C10 8LS 2202 A 1 
HETATM 6 N N12 8LS . . . C 3 -92.013 -13.996 159.963 1 73.93 ? N12 8LS 2202 A 1 
HETATM 7 C C13 8LS . . . C 3 -93.371 -14.271 160.461 1 67.12 ? C13 8LS 2202 A 1 
HETATM 8 C C15 8LS . . . C 3 -95.75 -14.445 159.761 1 67.32 ? C15 8LS 2202 A 1 
HETATM 9 C C17 8LS . . . C 3 -98.105 -14.741 159.161 1 64.71 ? C17 8LS 2202 A 1 
HETATM 10 C C20 8LS . . . C 3 -99.675 -17.983 157.983 1 66.82 ? C20 8LS 2202 A 1 
HETATM 11 C C21 8LS . . . C 3 -98.642 -18.882 158.155 1 63.84 ? C21 8LS 2202 A 1 
HETATM 12 C C22 8LS . . . C 3 -97.43 -18.448 158.643 1 65.67 ? C22 8LS 2202 A 1 
HETATM 13 C C24 8LS . . . C 3 -96.484 -13.841 157.594 1 71.81 ? C24 8LS 2202 A 1 
HETATM 14 C C26 8LS . . . C 3 -95.179 -13.467 157.239 1 64.74 ? C26 8LS 2202 A 1 
HETATM 15 C C1 8LS . . . C 3 -90.116 -11.937 161.164 1 64.19 ? C1 8LS 2202 A 1 
HETATM 16 C C2 8LS . . . C 3 -89.973 -13.432 161.313 1 68.84 ? C2 8LS 2202 A 1 
HETATM 17 C C3 8LS . . . C 3 -88.914 -13.972 162.035 1 60.9 ? C3 8LS 2202 A 1 
HETATM 18 O O8 8LS . . . C 3 -89.646 -17.546 161.675 1 68.99 ? O8 8LS 2202 A 1 
HETATM 19 C C9 8LS . . . C 3 -89.704 -16.194 161.592 1 66.44 ? C9 8LS 2202 A 1 
HETATM 20 C C11 8LS . . . C 3 -90.904 -14.305 160.746 1 69.51 ? C11 8LS 2202 A 1 
HETATM 21 C C14 8LS . . . C 3 -94.486 -14.112 159.454 1 71.81 ? C14 8LS 2202 A 1 
HETATM 22 N N16 8LS . . . C 3 -96.741 -14.322 158.83 1 69.51 ? N16 8LS 2202 A 1 
HETATM 23 C C18 8LS . . . C 3 -98.292 -16.205 158.802 1 63.86 ? C18 8LS 2202 A 1 
HETATM 24 C C19 8LS . . . C 3 -99.502 -16.652 158.306 1 65.94 ? C19 8LS 2202 A 1 
HETATM 25 C C23 8LS . . . C 3 -97.265 -17.115 158.962 1 65.52 ? C23 8LS 2202 A 1 
HETATM 26 O O25 8LS . . . C 3 -97.394 -13.744 156.779 1 65.6 ? O25 8LS 2202 A 1 
HETATM 27 C C27 8LS . . . C 3 -94.163 -13.599 158.171 1 70.75 ? C27 8LS 2202 A 1 
HETATM 28 N N28 8LS . . . C 3 -92.849 -13.288 157.861 1 72.33 ? N28 8LS 2202 A 1 
HETATM 29 C C29 8LS . . . C 3 -91.836 -13.539 158.703 1 72.74 ? C29 8LS 2202 A 1 
HETATM 30 O O30 8LS . . . C 3 -90.704 -13.314 158.32 1 66.3 ? O30 8LS 2202 A 1 
HETATM 31 C C31 8LS . . . C 3 -88.675 -19.608 162.368 1 72.28 ? C31 8LS 2202 A 1 
HETATM 32 N N32 8LS . . . C 3 -88.077 -20.132 161.319 1 86.83 ? N32 8LS 2202 A 1 
HETATM 33 C C33 8LS . . . C 3 -88.056 -21.439 161.111 1 86.21 ? C33 8LS 2202 A 1 
HETATM 34 C C34 8LS . . . C 3 -88.665 -22.316 161.985 1 83.78 ? C34 8LS 2202 A 1 
HETATM 35 C C35 8LS . . . C 3 -89.311 -21.802 163.096 1 79.88 ? C35 8LS 2202 A 1 
HETATM 36 C C36 8LS . . . C 3 -89.317 -20.425 163.279 1 76.79 ? C36 8LS 2202 A 1 
HETATM 37 F F37 8LS . . . C 3 -89.94 -19.883 164.349 1 81.75 ? F37 8LS 2202 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           37 
#