data_5URK
#
_model_server_result.job_id            YEGVkKtIP-A68fShbvqygw 
_model_server_result.datetime_utc      '2024-12-22 05:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5urk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2202}' 
#
_entry.id    5URK 
#
_exptl.entry_id    5URK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              437.49 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-benzyl-3-[3-(benzyloxy)phenyl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(1H,3H)-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.74 
_cell.angle_gamma         90 
_cell.entry_id            5URK 
_cell.length_a            145.488 
_cell.length_b            154.071 
_cell.length_c            143.509 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5URK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H23 N3 O3' 
_chem_comp.formula_weight    437.49 
_chem_comp.id                8LP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-benzyl-3-[3-(benzyloxy)phenyl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(1H,3H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C23 8LP doub 1 n n 
C19 C23 8LP sing 2 n n 
C19 C22 8LP doub 3 n n 
C23 N3 8LP sing 4 n n 
N1 C22 8LP sing 5 n n 
N1 C24 8LP sing 6 n n 
O2 C24 8LP doub 7 n n 
C1 C3 8LP doub 8 n y 
C1 C4 8LP sing 9 n y 
C3 C8 8LP sing 10 n y 
C22 C21 8LP sing 11 n n 
C4 C9 8LP doub 12 n y 
C24 N2 8LP sing 13 n n 
C8 C15 8LP doub 14 n y 
C9 C15 8LP sing 15 n y 
C15 C26 8LP sing 16 n n 
N3 C26 8LP sing 17 n n 
N3 C20 8LP sing 18 n n 
C21 C20 8LP doub 19 n n 
C21 C25 8LP sing 20 n n 
N2 C25 8LP sing 21 n n 
N2 C17 8LP sing 22 n n 
C17 C12 8LP doub 23 n y 
C17 C14 8LP sing 24 n y 
C12 C7 8LP sing 25 n y 
C14 C18 8LP doub 26 n y 
C7 C13 8LP doub 27 n y 
C18 C13 8LP sing 28 n y 
C18 O3 8LP sing 29 n n 
C27 C16 8LP sing 30 n n 
C27 O3 8LP sing 31 n n 
C11 C16 8LP doub 32 n y 
C11 C6 8LP sing 33 n y 
C16 C10 8LP sing 34 n y 
C6 C2 8LP doub 35 n y 
C10 C5 8LP doub 36 n y 
C2 C5 8LP sing 37 n y 
N1 H1 8LP sing 38 n n 
C4 H2 8LP sing 39 n n 
C5 H3 8LP sing 40 n n 
C6 H4 8LP sing 41 n n 
C7 H5 8LP sing 42 n n 
C8 H6 8LP sing 43 n n 
C10 H7 8LP sing 44 n n 
C13 H8 8LP sing 45 n n 
C20 H9 8LP sing 46 n n 
C26 H10 8LP sing 47 n n 
C26 H11 8LP sing 48 n n 
C1 H12 8LP sing 49 n n 
C2 H13 8LP sing 50 n n 
C3 H14 8LP sing 51 n n 
C9 H15 8LP sing 52 n n 
C11 H16 8LP sing 53 n n 
C12 H17 8LP sing 54 n n 
C14 H18 8LP sing 55 n n 
C19 H19 8LP sing 56 n n 
C25 H20 8LP sing 57 n n 
C25 H21 8LP sing 58 n n 
C27 H22 8LP sing 59 n n 
C27 H23 8LP sing 60 n n 
#
_atom_sites.entry_id                     5URK 
_atom_sites.fract_transf_matrix[1][1]    0.006873 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004087 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 2201 2400 GOL GOL . 
C 3 8LP A 1 2202 2500 8LP LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 8LP . . . C 3 238.122 9.139 158.619 1 74.36 ? N1 8LP 2202 A 1 
HETATM 2 N N3 8LP . . . C 3 241.874 10.289 159.765 1 77.43 ? N3 8LP 2202 A 1 
HETATM 3 C C4 8LP . . . C 3 242.553 14.318 159.202 1 70.53 ? C4 8LP 2202 A 1 
HETATM 4 C C5 8LP . . . C 3 232.143 16.062 163.802 1 83.79 ? C5 8LP 2202 A 1 
HETATM 5 C C6 8LP . . . C 3 234.187 17.228 163.405 1 67.78 ? C6 8LP 2202 A 1 
HETATM 6 C C7 8LP . . . C 3 234.342 8.925 162.643 1 71.29 ? C7 8LP 2202 A 1 
HETATM 7 C C8 8LP . . . C 3 244.661 12.573 159.347 1 69.19 ? C8 8LP 2202 A 1 
HETATM 8 C C10 8LP . . . C 3 232.758 14.868 163.493 1 77.96 ? C10 8LP 2202 A 1 
HETATM 9 C C13 8LP . . . C 3 233.863 10.139 163.068 1 71.85 ? C13 8LP 2202 A 1 
HETATM 10 C C15 8LP . . . C 3 243.407 12.13 159.692 1 69.52 ? C15 8LP 2202 A 1 
HETATM 11 C C17 8LP . . . C 3 236.03 10.057 161.428 1 70.35 ? C17 8LP 2202 A 1 
HETATM 12 C C20 8LP . . . C 3 240.827 10.347 160.644 1 72.4 ? C20 8LP 2202 A 1 
HETATM 13 C C21 8LP . . . C 3 239.604 9.976 160.272 1 75.19 ? C21 8LP 2202 A 1 
HETATM 14 C C22 8LP . . . C 3 239.389 9.508 158.947 1 76.27 ? C22 8LP 2202 A 1 
HETATM 15 C C24 8LP . . . C 3 236.978 9.45 159.306 1 73.16 ? C24 8LP 2202 A 1 
HETATM 16 C C26 8LP . . . C 3 243.189 10.716 160.15 1 78.38 ? C26 8LP 2202 A 1 
HETATM 17 C C1 8LP . . . C 3 243.812 14.752 158.864 1 63.76 ? C1 8LP 2202 A 1 
HETATM 18 C C2 8LP . . . C 3 232.859 17.238 163.756 1 79.98 ? C2 8LP 2202 A 1 
HETATM 19 C C3 8LP . . . C 3 244.862 13.871 158.938 1 67.03 ? C3 8LP 2202 A 1 
HETATM 20 C C9 8LP . . . C 3 242.36 13.019 159.61 1 69.95 ? C9 8LP 2202 A 1 
HETATM 21 C C11 8LP . . . C 3 234.787 16.028 163.102 1 75.12 ? C11 8LP 2202 A 1 
HETATM 22 C C12 8LP . . . C 3 235.431 8.881 161.813 1 68.93 ? C12 8LP 2202 A 1 
HETATM 23 C C14 8LP . . . C 3 235.561 11.281 161.849 1 64.5 ? C14 8LP 2202 A 1 
HETATM 24 C C16 8LP . . . C 3 234.086 14.842 163.141 1 70.87 ? C16 8LP 2202 A 1 
HETATM 25 C C18 8LP . . . C 3 234.467 11.309 162.68 1 67.62 ? C18 8LP 2202 A 1 
HETATM 26 C C19 8LP . . . C 3 240.4 9.438 158.081 1 75.87 ? C19 8LP 2202 A 1 
HETATM 27 C C23 8LP . . . C 3 241.754 9.848 158.485 1 71.5 ? C23 8LP 2202 A 1 
HETATM 28 C C25 8LP . . . C 3 238.437 10.024 161.178 1 78.02 ? C25 8LP 2202 A 1 
HETATM 29 C C27 8LP . . . C 3 234.762 13.552 162.798 1 69.12 ? C27 8LP 2202 A 1 
HETATM 30 N N2 8LP . . . C 3 237.122 9.936 160.575 1 75.51 ? N2 8LP 2202 A 1 
HETATM 31 O O1 8LP . . . C 3 242.704 9.795 157.724 1 69.49 ? O1 8LP 2202 A 1 
HETATM 32 O O2 8LP . . . C 3 235.86 9.292 158.828 1 73.79 ? O2 8LP 2202 A 1 
HETATM 33 O O3 8LP . . . C 3 233.911 12.483 163.158 1 68.62 ? O3 8LP 2202 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#