data_5URO # _model_server_result.job_id Rj9VBxCLEB5WFKwg1-ItRA _model_server_result.datetime_utc '2024-11-25 12:43:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5URO # _exptl.entry_id 5URO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 98.057 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-oxydi(ethyn-1-ol)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5URO _cell.length_a 51.427 _cell.length_b 78.281 _cell.length_c 87.372 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5URO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H2 O3' _chem_comp.formula_weight 98.057 _chem_comp.id 8LD _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-oxydi(ethyn-1-ol)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAD 8LD sing 1 n n CAD CAF 8LD trip 2 n n CAF OAG 8LD sing 3 n n OAG CAE 8LD sing 4 n n CAE CAC 8LD trip 5 n n CAC OAA 8LD sing 6 n n OAA H1 8LD sing 7 n n OAB H2 8LD sing 8 n n # _atom_sites.entry_id 5URO _atom_sites.fract_transf_matrix[1][1] 0.019445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8LD A 1 401 1 8LD DRG . C 3 HOH A 1 501 108 HOH HOH . C 3 HOH A 2 502 172 HOH HOH . C 3 HOH A 3 503 153 HOH HOH . C 3 HOH A 4 504 124 HOH HOH . C 3 HOH A 5 505 164 HOH HOH . C 3 HOH A 6 506 160 HOH HOH . C 3 HOH A 7 507 154 HOH HOH . C 3 HOH A 8 508 170 HOH HOH . C 3 HOH A 9 509 34 HOH HOH . C 3 HOH A 10 510 74 HOH HOH . C 3 HOH A 11 511 91 HOH HOH . C 3 HOH A 12 512 47 HOH HOH . C 3 HOH A 13 513 19 HOH HOH . C 3 HOH A 14 514 28 HOH HOH . C 3 HOH A 15 515 86 HOH HOH . C 3 HOH A 16 516 5 HOH HOH . C 3 HOH A 17 517 80 HOH HOH . C 3 HOH A 18 518 151 HOH HOH . C 3 HOH A 19 519 44 HOH HOH . C 3 HOH A 20 520 66 HOH HOH . C 3 HOH A 21 521 26 HOH HOH . C 3 HOH A 22 522 50 HOH HOH . C 3 HOH A 23 523 142 HOH HOH . C 3 HOH A 24 524 15 HOH HOH . C 3 HOH A 25 525 82 HOH HOH . C 3 HOH A 26 526 52 HOH HOH . C 3 HOH A 27 527 37 HOH HOH . C 3 HOH A 28 528 112 HOH HOH . C 3 HOH A 29 529 134 HOH HOH . C 3 HOH A 30 530 17 HOH HOH . C 3 HOH A 31 531 93 HOH HOH . C 3 HOH A 32 532 1 HOH HOH . C 3 HOH A 33 533 127 HOH HOH . C 3 HOH A 34 534 101 HOH HOH . C 3 HOH A 35 535 143 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 104 HOH HOH . C 3 HOH A 38 538 122 HOH HOH . C 3 HOH A 39 539 116 HOH HOH . C 3 HOH A 40 540 39 HOH HOH . C 3 HOH A 41 541 40 HOH HOH . C 3 HOH A 42 542 22 HOH HOH . C 3 HOH A 43 543 20 HOH HOH . C 3 HOH A 44 544 95 HOH HOH . C 3 HOH A 45 545 10 HOH HOH . C 3 HOH A 46 546 27 HOH HOH . C 3 HOH A 47 547 159 HOH HOH . C 3 HOH A 48 548 156 HOH HOH . C 3 HOH A 49 549 89 HOH HOH . C 3 HOH A 50 550 53 HOH HOH . C 3 HOH A 51 551 24 HOH HOH . C 3 HOH A 52 552 8 HOH HOH . C 3 HOH A 53 553 87 HOH HOH . C 3 HOH A 54 554 94 HOH HOH . C 3 HOH A 55 555 78 HOH HOH . C 3 HOH A 56 556 113 HOH HOH . C 3 HOH A 57 557 76 HOH HOH . C 3 HOH A 58 558 2 HOH HOH . C 3 HOH A 59 559 57 HOH HOH . C 3 HOH A 60 560 38 HOH HOH . C 3 HOH A 61 561 4 HOH HOH . C 3 HOH A 62 562 3 HOH HOH . C 3 HOH A 63 563 6 HOH HOH . C 3 HOH A 64 564 168 HOH HOH . C 3 HOH A 65 565 9 HOH HOH . C 3 HOH A 66 566 98 HOH HOH . C 3 HOH A 67 567 125 HOH HOH . C 3 HOH A 68 568 132 HOH HOH . C 3 HOH A 69 569 25 HOH HOH . C 3 HOH A 70 570 150 HOH HOH . C 3 HOH A 71 571 32 HOH HOH . C 3 HOH A 72 572 46 HOH HOH . C 3 HOH A 73 573 128 HOH HOH . C 3 HOH A 74 574 63 HOH HOH . C 3 HOH A 75 575 7 HOH HOH . C 3 HOH A 76 576 84 HOH HOH . C 3 HOH A 77 577 45 HOH HOH . C 3 HOH A 78 578 59 HOH HOH . C 3 HOH A 79 579 88 HOH HOH . C 3 HOH A 80 580 16 HOH HOH . C 3 HOH A 81 581 29 HOH HOH . C 3 HOH A 82 582 14 HOH HOH . C 3 HOH A 83 583 49 HOH HOH . C 3 HOH A 84 584 77 HOH HOH . C 3 HOH A 85 585 140 HOH HOH . C 3 HOH A 86 586 152 HOH HOH . C 3 HOH A 87 587 121 HOH HOH . C 3 HOH A 88 588 33 HOH HOH . C 3 HOH A 89 589 72 HOH HOH . C 3 HOH A 90 590 61 HOH HOH . C 3 HOH A 91 591 71 HOH HOH . C 3 HOH A 92 592 31 HOH HOH . C 3 HOH A 93 593 115 HOH HOH . C 3 HOH A 94 594 161 HOH HOH . C 3 HOH A 95 595 107 HOH HOH . C 3 HOH A 96 596 35 HOH HOH . C 3 HOH A 97 597 177 HOH HOH . C 3 HOH A 98 598 81 HOH HOH . C 3 HOH A 99 599 55 HOH HOH . C 3 HOH A 100 600 99 HOH HOH . C 3 HOH A 101 601 11 HOH HOH . C 3 HOH A 102 602 12 HOH HOH . C 3 HOH A 103 603 41 HOH HOH . C 3 HOH A 104 604 123 HOH HOH . C 3 HOH A 105 605 69 HOH HOH . C 3 HOH A 106 606 13 HOH HOH . C 3 HOH A 107 607 102 HOH HOH . C 3 HOH A 108 608 60 HOH HOH . C 3 HOH A 109 609 155 HOH HOH . C 3 HOH A 110 610 100 HOH HOH . C 3 HOH A 111 611 73 HOH HOH . C 3 HOH A 112 612 166 HOH HOH . C 3 HOH A 113 613 85 HOH HOH . C 3 HOH A 114 614 83 HOH HOH . C 3 HOH A 115 615 137 HOH HOH . C 3 HOH A 116 616 56 HOH HOH . C 3 HOH A 117 617 18 HOH HOH . C 3 HOH A 118 618 130 HOH HOH . C 3 HOH A 119 619 118 HOH HOH . C 3 HOH A 120 620 129 HOH HOH . C 3 HOH A 121 621 68 HOH HOH . C 3 HOH A 122 622 178 HOH HOH . C 3 HOH A 123 623 70 HOH HOH . C 3 HOH A 124 624 65 HOH HOH . C 3 HOH A 125 625 148 HOH HOH . C 3 HOH A 126 626 21 HOH HOH . C 3 HOH A 127 627 106 HOH HOH . C 3 HOH A 128 628 145 HOH HOH . C 3 HOH A 129 629 30 HOH HOH . C 3 HOH A 130 630 42 HOH HOH . C 3 HOH A 131 631 43 HOH HOH . C 3 HOH A 132 632 62 HOH HOH . C 3 HOH A 133 633 149 HOH HOH . C 3 HOH A 134 634 90 HOH HOH . C 3 HOH A 135 635 51 HOH HOH . C 3 HOH A 136 636 64 HOH HOH . C 3 HOH A 137 637 133 HOH HOH . C 3 HOH A 138 638 157 HOH HOH . C 3 HOH A 139 639 179 HOH HOH . C 3 HOH A 140 640 54 HOH HOH . C 3 HOH A 141 641 105 HOH HOH . C 3 HOH A 142 642 165 HOH HOH . C 3 HOH A 143 643 48 HOH HOH . C 3 HOH A 144 644 175 HOH HOH . C 3 HOH A 145 645 67 HOH HOH . C 3 HOH A 146 646 109 HOH HOH . C 3 HOH A 147 647 111 HOH HOH . C 3 HOH A 148 648 120 HOH HOH . C 3 HOH A 149 649 139 HOH HOH . C 3 HOH A 150 650 117 HOH HOH . C 3 HOH A 151 651 131 HOH HOH . C 3 HOH A 152 652 119 HOH HOH . C 3 HOH A 153 653 96 HOH HOH . C 3 HOH A 154 654 75 HOH HOH . C 3 HOH A 155 655 158 HOH HOH . C 3 HOH A 156 656 147 HOH HOH . C 3 HOH A 157 657 92 HOH HOH . C 3 HOH A 158 658 79 HOH HOH . C 3 HOH A 159 659 173 HOH HOH . C 3 HOH A 160 660 114 HOH HOH . C 3 HOH A 161 661 23 HOH HOH . C 3 HOH A 162 662 176 HOH HOH . C 3 HOH A 163 663 97 HOH HOH . C 3 HOH A 164 664 174 HOH HOH . C 3 HOH A 165 665 146 HOH HOH . C 3 HOH A 166 666 138 HOH HOH . C 3 HOH A 167 667 58 HOH HOH . C 3 HOH A 168 668 167 HOH HOH . C 3 HOH A 169 669 135 HOH HOH . C 3 HOH A 170 670 162 HOH HOH . C 3 HOH A 171 671 141 HOH HOH . C 3 HOH A 172 672 163 HOH HOH . C 3 HOH A 173 673 171 HOH HOH . C 3 HOH A 174 674 144 HOH HOH . C 3 HOH A 175 675 136 HOH HOH . C 3 HOH A 176 676 126 HOH HOH . C 3 HOH A 177 677 110 HOH HOH . C 3 HOH A 178 678 103 HOH HOH . C 3 HOH A 179 679 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 8LD . . . B 2 13.378 25.455 35.839 1 49.77 ? OAA 8LD 401 A 1 HETATM 2 C CAC 8LD . . . B 2 13.717 24.138 35.511 1 44.17 ? CAC 8LD 401 A 1 HETATM 3 C CAE 8LD . . . B 2 13.923 22.982 35.285 1 47.9 ? CAE 8LD 401 A 1 HETATM 4 O OAG 8LD . . . B 2 14.007 21.581 35.13 1 54.86 ? OAG 8LD 401 A 1 HETATM 5 C CAF 8LD . . . B 2 15.104 20.996 34.479 1 51.58 ? CAF 8LD 401 A 1 HETATM 6 C CAD 8LD . . . B 2 16.044 20.475 33.966 1 50.32 ? CAD 8LD 401 A 1 HETATM 7 O OAB 8LD . . . B 2 17.189 19.902 33.38 1 45.13 ? OAB 8LD 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #