data_5URQ # _model_server_result.job_id BDCqbqlJ-oPokYWmowoLKQ _model_server_result.datetime_utc '2024-11-08 06:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5urq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 5URQ # _exptl.entry_id 5URQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.47 _cell.angle_gamma 90 _cell.entry_id 5URQ _cell.length_a 98.487 _cell.length_b 141.793 _cell.length_c 121.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5URQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,GA,HA,IA 1 1 E,F,G,H,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,JA,KA,LA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 O N N ? 4 T N N ? 4 W N N ? 4 X N N ? 4 AA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 217 A GLY 296 1_555 K K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 A O GLY 219 A GLY 298 1_555 K K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc3 A O CYS 222 A CYS 301 1_555 K K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc4 A O GLU 386 A GLU 465 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc5 A O SER 387 A SER 466 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc6 A O HIS 388 A HIS 467 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc7 K K K . A K 503 1_555 D O GLU 386 D GLU 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc8 K K K . A K 503 1_555 D O SER 387 D SER 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.251 ? metalc ? metalc9 K K K . A K 503 1_555 D O HIS 388 D HIS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc10 L K K . A K 504 1_555 B O GLY 217 B GLY 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc11 L K K . A K 504 1_555 B O GLY 219 B GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc12 L K K . A K 504 1_555 B O CYS 222 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc13 B O GLU 386 B GLU 465 1_555 O K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc14 B O SER 387 B SER 466 1_555 O K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc15 B O HIS 388 B HIS 467 1_555 O K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc16 O K K . B K 502 1_555 C O GLY 217 C GLY 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc17 O K K . B K 502 1_555 C O GLY 219 C GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc18 O K K . B K 502 1_555 C O CYS 222 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc19 C O GLU 386 C GLU 465 1_555 T K K . D K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc20 C O HIS 388 C HIS 467 1_555 T K K . D K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc21 D O GLY 217 D GLY 296 1_555 T K K . D K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc22 D O GLY 219 D GLY 298 1_555 T K K . D K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc23 D O CYS 222 D CYS 301 1_555 T K K . D K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc24 E O GLY 217 E GLY 296 1_555 W K K . E K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc25 E O GLY 219 E GLY 298 1_555 W K K . E K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc26 E O CYS 222 E CYS 301 1_555 W K K . E K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc27 E O GLU 386 E GLU 465 1_555 X K K . E K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 E O SER 387 E SER 466 1_555 X K K . E K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc29 E O HIS 388 E HIS 467 1_555 X K K . E K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc30 W K K . E K 503 1_555 G O GLU 386 H GLU 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc31 W K K . E K 503 1_555 G O SER 387 H SER 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc32 W K K . E K 503 1_555 G O HIS 388 H HIS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc33 X K K . E K 504 1_555 JA O HOH . E HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.228 ? metalc ? metalc34 X K K . E K 504 1_555 F O GLY 217 F GLY 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc35 X K K . E K 504 1_555 F O GLY 219 F GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc36 X K K . E K 504 1_555 F O CYS 222 F CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc37 F O GLU 386 F GLU 465 1_555 AA K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc38 F O SER 387 F SER 466 1_555 AA K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc39 F O HIS 388 F HIS 467 1_555 AA K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? metalc ? metalc40 AA K K . F K 502 1_555 H O GLY 217 G GLY 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? metalc ? metalc41 AA K K . F K 502 1_555 H O GLY 219 G GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc42 AA K K . F K 502 1_555 H O CYS 222 G CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc43 G O GLY 217 H GLY 296 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? metalc ? metalc44 G O GLY 219 H GLY 298 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc45 G O CYS 222 H CYS 301 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc46 H O GLU 386 G GLU 465 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc47 H O SER 387 G SER 466 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc48 H O HIS 388 G HIS 467 1_555 DA K K . G K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5URQ _atom_sites.fract_transf_matrix[1][1] 0.010154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000794 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IMP A 1 501 500 IMP IMP . J 3 8L7 A 1 502 501 8L7 176 . K 4 K A 1 503 502 K K . L 4 K A 1 504 502 K K . M 2 IMP B 1 500 500 IMP IMP . N 3 8L7 B 1 501 501 8L7 176 . O 4 K B 1 502 502 K K . P 2 IMP C 1 500 500 IMP IMP . Q 3 8L7 C 1 501 501 8L7 176 . R 2 IMP D 1 500 500 IMP IMP . S 3 8L7 D 1 501 501 8L7 176 . T 4 K D 1 502 502 K K . U 2 IMP E 1 501 500 IMP IMP . V 3 8L7 E 1 502 501 8L7 176 . W 4 K E 1 503 502 K K . X 4 K E 1 504 502 K K . Y 2 IMP F 1 500 500 IMP IMP . Z 3 8L7 F 1 501 501 8L7 176 . AA 4 K F 1 502 502 K K . BA 2 IMP H 1 500 500 IMP IMP . CA 3 8L7 H 1 501 501 8L7 176 . DA 4 K G 1 501 502 K K . EA 2 IMP G 1 502 500 IMP IMP . FA 3 8L7 G 1 503 501 8L7 176 . GA 5 HOH A 1 601 17 HOH HOH . GA 5 HOH A 2 602 8 HOH HOH . GA 5 HOH A 3 603 6 HOH HOH . HA 5 HOH B 1 601 7 HOH HOH . HA 5 HOH B 2 602 16 HOH HOH . IA 5 HOH D 1 601 10 HOH HOH . IA 5 HOH D 2 602 13 HOH HOH . IA 5 HOH D 3 603 14 HOH HOH . JA 5 HOH E 1 601 11 HOH HOH . JA 5 HOH E 2 602 3 HOH HOH . JA 5 HOH E 3 603 12 HOH HOH . KA 5 HOH F 1 601 5 HOH HOH . KA 5 HOH F 2 602 15 HOH HOH . KA 5 HOH F 3 603 9 HOH HOH . KA 5 HOH F 4 604 4 HOH HOH . LA 5 HOH G 1 601 1 HOH HOH . LA 5 HOH G 2 602 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 49.181 _atom_site.Cartn_y 14.46 _atom_site.Cartn_z -15.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #