data_5URY # _model_server_result.job_id xU-H9E6pjx6PEFRvHeefWg _model_server_result.datetime_utc '2024-11-06 01:29:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ury # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":205}' # _entry.id 5URY # _exptl.entry_id 5URY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.408 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PALMITOLEIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5URY _cell.length_a 123.412 _cell.length_b 123.412 _cell.length_c 46.951 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5URY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 200 NAG 2 n C FUC 2 C 2 FUC A 203 FUC 2 n C FUC 3 C 3 FUC A 202 FUC 2 n C FUC 4 C 4 FUC A 201 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 8 1_555 A SG CYS 82 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 29 A CYS 16 1_555 A SG CYS 75 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 A SG CYS 66 A CYS 53 1_555 A SG CYS 104 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf4 A SG CYS 93 A CYS 80 1_555 A SG CYS 135 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf5 A SG CYS 97 A CYS 84 1_555 A SG CYS 121 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf6 B SG CYS 21 B CYS 8 1_555 B SG CYS 82 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf7 B SG CYS 29 B CYS 16 1_555 B SG CYS 75 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf8 B SG CYS 66 B CYS 53 1_555 B SG CYS 104 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? disulf ? disulf9 B SG CYS 93 B CYS 80 1_555 B SG CYS 135 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf10 B SG CYS 97 B CYS 84 1_555 B SG CYS 121 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 35 A ASN 22 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 C O3 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? # _chem_comp.formula 'C16 H30 O2' _chem_comp.formula_weight 254.408 _chem_comp.id PAM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITOLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PAM sing 290 n n C1 O2 PAM doub 291 n n C1 C2 PAM sing 292 n n O1 HO1 PAM sing 293 n n C2 C3 PAM sing 294 n n C2 H21 PAM sing 295 n n C2 H22 PAM sing 296 n n C3 C4 PAM sing 297 n n C3 H31 PAM sing 298 n n C3 H32 PAM sing 299 n n C4 C5 PAM sing 300 n n C4 H41 PAM sing 301 n n C4 H42 PAM sing 302 n n C5 C6 PAM sing 303 n n C5 H51 PAM sing 304 n n C5 H52 PAM sing 305 n n C6 C7 PAM sing 306 n n C6 H61 PAM sing 307 n n C6 H62 PAM sing 308 n n C7 C8 PAM sing 309 n n C7 H71 PAM sing 310 n n C7 H72 PAM sing 311 n n C8 C9 PAM sing 312 n n C8 H81 PAM sing 313 n n C8 H82 PAM sing 314 n n C9 C10 PAM doub 315 z n C9 H9 PAM sing 316 n n C10 C11 PAM sing 317 n n C10 H10 PAM sing 318 n n C11 C12 PAM sing 319 n n C11 H111 PAM sing 320 n n C11 H112 PAM sing 321 n n C12 C13 PAM sing 322 n n C12 H121 PAM sing 323 n n C12 H122 PAM sing 324 n n C13 C14 PAM sing 325 n n C13 H131 PAM sing 326 n n C13 H132 PAM sing 327 n n C14 C15 PAM sing 328 n n C14 H141 PAM sing 329 n n C14 H142 PAM sing 330 n n C15 C16 PAM sing 331 n n C15 H151 PAM sing 332 n n C15 H152 PAM sing 333 n n C16 H161 PAM sing 334 n n C16 H162 PAM sing 335 n n C16 H163 PAM sing 336 n n # _atom_sites.entry_id 5URY _atom_sites.fract_transf_matrix[1][1] 0.008103 _atom_sites.fract_transf_matrix[1][2] 0.004678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PAM A 1 205 2 PAM PAM . E 3 PAM B 1 201 1 PAM PAM . F 4 HOH A 1 301 72 HOH HOH . F 4 HOH A 2 302 34 HOH HOH . F 4 HOH A 3 303 89 HOH HOH . F 4 HOH A 4 304 108 HOH HOH . F 4 HOH A 5 305 38 HOH HOH . F 4 HOH A 6 306 27 HOH HOH . F 4 HOH A 7 307 112 HOH HOH . F 4 HOH A 8 308 78 HOH HOH . F 4 HOH A 9 309 17 HOH HOH . F 4 HOH A 10 310 22 HOH HOH . F 4 HOH A 11 311 58 HOH HOH . F 4 HOH A 12 312 8 HOH HOH . F 4 HOH A 13 313 39 HOH HOH . F 4 HOH A 14 314 109 HOH HOH . F 4 HOH A 15 315 33 HOH HOH . F 4 HOH A 16 316 24 HOH HOH . F 4 HOH A 17 317 10 HOH HOH . F 4 HOH A 18 318 23 HOH HOH . F 4 HOH A 19 319 30 HOH HOH . F 4 HOH A 20 320 95 HOH HOH . F 4 HOH A 21 321 99 HOH HOH . F 4 HOH A 22 322 48 HOH HOH . F 4 HOH A 23 323 1 HOH HOH . F 4 HOH A 24 324 44 HOH HOH . F 4 HOH A 25 325 126 HOH HOH . F 4 HOH A 26 326 77 HOH HOH . F 4 HOH A 27 327 41 HOH HOH . F 4 HOH A 28 328 35 HOH HOH . F 4 HOH A 29 329 76 HOH HOH . F 4 HOH A 30 330 66 HOH HOH . F 4 HOH A 31 331 11 HOH HOH . F 4 HOH A 32 332 91 HOH HOH . F 4 HOH A 33 333 133 HOH HOH . F 4 HOH A 34 334 9 HOH HOH . F 4 HOH A 35 335 63 HOH HOH . F 4 HOH A 36 336 19 HOH HOH . F 4 HOH A 37 337 3 HOH HOH . F 4 HOH A 38 338 4 HOH HOH . F 4 HOH A 39 339 135 HOH HOH . F 4 HOH A 40 340 31 HOH HOH . F 4 HOH A 41 341 83 HOH HOH . F 4 HOH A 42 342 103 HOH HOH . F 4 HOH A 43 343 25 HOH HOH . F 4 HOH A 44 344 92 HOH HOH . F 4 HOH A 45 345 57 HOH HOH . F 4 HOH A 46 346 100 HOH HOH . F 4 HOH A 47 347 132 HOH HOH . F 4 HOH A 48 348 14 HOH HOH . F 4 HOH A 49 349 12 HOH HOH . F 4 HOH A 50 350 40 HOH HOH . F 4 HOH A 51 351 32 HOH HOH . F 4 HOH A 52 352 28 HOH HOH . F 4 HOH A 53 353 79 HOH HOH . F 4 HOH A 54 354 43 HOH HOH . F 4 HOH A 55 355 42 HOH HOH . F 4 HOH A 56 356 56 HOH HOH . F 4 HOH A 57 357 69 HOH HOH . F 4 HOH A 58 358 119 HOH HOH . F 4 HOH A 59 359 49 HOH HOH . F 4 HOH A 60 360 68 HOH HOH . F 4 HOH A 61 361 20 HOH HOH . F 4 HOH A 62 362 134 HOH HOH . F 4 HOH A 63 363 2 HOH HOH . F 4 HOH A 64 364 115 HOH HOH . F 4 HOH A 65 365 85 HOH HOH . F 4 HOH A 66 366 106 HOH HOH . F 4 HOH A 67 367 70 HOH HOH . F 4 HOH A 68 368 82 HOH HOH . F 4 HOH A 69 369 21 HOH HOH . F 4 HOH A 70 370 122 HOH HOH . F 4 HOH A 71 371 137 HOH HOH . F 4 HOH A 72 372 81 HOH HOH . F 4 HOH A 73 373 87 HOH HOH . F 4 HOH A 74 374 96 HOH HOH . F 4 HOH A 75 375 113 HOH HOH . F 4 HOH A 76 376 125 HOH HOH . F 4 HOH A 77 377 123 HOH HOH . F 4 HOH A 78 378 71 HOH HOH . F 4 HOH A 79 379 111 HOH HOH . F 4 HOH A 80 380 131 HOH HOH . F 4 HOH A 81 381 121 HOH HOH . F 4 HOH A 82 382 138 HOH HOH . F 4 HOH A 83 383 80 HOH HOH . F 4 HOH A 84 384 139 HOH HOH . G 4 HOH B 1 301 120 HOH HOH . G 4 HOH B 2 302 101 HOH HOH . G 4 HOH B 3 303 117 HOH HOH . G 4 HOH B 4 304 46 HOH HOH . G 4 HOH B 5 305 60 HOH HOH . G 4 HOH B 6 306 75 HOH HOH . G 4 HOH B 7 307 37 HOH HOH . G 4 HOH B 8 308 26 HOH HOH . G 4 HOH B 9 309 36 HOH HOH . G 4 HOH B 10 310 7 HOH HOH . G 4 HOH B 11 311 52 HOH HOH . G 4 HOH B 12 312 98 HOH HOH . G 4 HOH B 13 313 116 HOH HOH . G 4 HOH B 14 314 18 HOH HOH . G 4 HOH B 15 315 74 HOH HOH . G 4 HOH B 16 316 65 HOH HOH . G 4 HOH B 17 317 15 HOH HOH . G 4 HOH B 18 318 128 HOH HOH . G 4 HOH B 19 319 127 HOH HOH . G 4 HOH B 20 320 67 HOH HOH . G 4 HOH B 21 321 114 HOH HOH . G 4 HOH B 22 322 140 HOH HOH . G 4 HOH B 23 323 29 HOH HOH . G 4 HOH B 24 324 16 HOH HOH . G 4 HOH B 25 325 6 HOH HOH . G 4 HOH B 26 326 84 HOH HOH . G 4 HOH B 27 327 45 HOH HOH . G 4 HOH B 28 328 90 HOH HOH . G 4 HOH B 29 329 129 HOH HOH . G 4 HOH B 30 330 5 HOH HOH . G 4 HOH B 31 331 51 HOH HOH . G 4 HOH B 32 332 50 HOH HOH . G 4 HOH B 33 333 102 HOH HOH . G 4 HOH B 34 334 141 HOH HOH . G 4 HOH B 35 335 93 HOH HOH . G 4 HOH B 36 336 61 HOH HOH . G 4 HOH B 37 337 88 HOH HOH . G 4 HOH B 38 338 62 HOH HOH . G 4 HOH B 39 339 54 HOH HOH . G 4 HOH B 40 340 130 HOH HOH . G 4 HOH B 41 341 94 HOH HOH . G 4 HOH B 42 342 53 HOH HOH . G 4 HOH B 43 343 13 HOH HOH . G 4 HOH B 44 344 59 HOH HOH . G 4 HOH B 45 345 73 HOH HOH . G 4 HOH B 46 346 104 HOH HOH . G 4 HOH B 47 347 107 HOH HOH . G 4 HOH B 48 348 86 HOH HOH . G 4 HOH B 49 349 105 HOH HOH . G 4 HOH B 50 350 47 HOH HOH . G 4 HOH B 51 351 55 HOH HOH . G 4 HOH B 52 352 64 HOH HOH . G 4 HOH B 53 353 97 HOH HOH . G 4 HOH B 54 354 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PAM . . . D 3 -41.127 58.353 -12.637 1 84.81 ? C1 PAM 205 A 1 HETATM 2 O O1 PAM . . . D 3 -40.694 59.451 -12.223 1 90.39 ? O1 PAM 205 A 1 HETATM 3 O O2 PAM . . . D 3 -40.546 57.694 -13.525 1 89.24 ? O2 PAM 205 A 1 HETATM 4 C C2 PAM . . . D 3 -42.399 57.791 -12.044 1 76.46 ? C2 PAM 205 A 1 HETATM 5 C C3 PAM . . . D 3 -43.035 58.783 -11.075 1 73.75 ? C3 PAM 205 A 1 HETATM 6 C C4 PAM . . . D 3 -43.821 59.846 -11.833 1 74.8 ? C4 PAM 205 A 1 HETATM 7 C C5 PAM . . . D 3 -44.743 60.635 -10.911 1 71.57 ? C5 PAM 205 A 1 HETATM 8 C C6 PAM . . . D 3 -46.045 59.886 -10.635 1 69.64 ? C6 PAM 205 A 1 HETATM 9 C C7 PAM . . . D 3 -47.245 60.788 -10.898 1 65.58 ? C7 PAM 205 A 1 HETATM 10 C C8 PAM . . . D 3 -48.477 60.39 -10.093 1 66.24 ? C8 PAM 205 A 1 HETATM 11 C C9 PAM . . . D 3 -48.418 60.981 -8.703 1 69.53 ? C9 PAM 205 A 1 HETATM 12 C C10 PAM . . . D 3 -49.134 62.056 -8.375 1 76.26 ? C10 PAM 205 A 1 HETATM 13 C C11 PAM . . . D 3 -49.052 62.614 -6.968 1 78.83 ? C11 PAM 205 A 1 HETATM 14 C C12 PAM . . . D 3 -48.536 64.049 -6.969 1 76.15 ? C12 PAM 205 A 1 HETATM 15 C C13 PAM . . . D 3 -47.223 64.19 -6.203 1 72.12 ? C13 PAM 205 A 1 HETATM 16 C C14 PAM . . . D 3 -46.052 64.37 -7.164 1 71.17 ? C14 PAM 205 A 1 HETATM 17 C C15 PAM . . . D 3 -44.819 64.896 -6.437 1 69.6 ? C15 PAM 205 A 1 HETATM 18 C C16 PAM . . . D 3 -43.602 64.865 -7.335 1 68.25 ? C16 PAM 205 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #