data_5US4 # _model_server_result.job_id W712c2nzzlYU0b3IY5WsKw _model_server_result.datetime_utc '2024-11-02 08:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5us4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5US4 # _exptl.entry_id 5US4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5US4 _cell.length_a 93.822 _cell.length_b 93.822 _cell.length_c 121.352 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5US4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 37 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 C O2B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 D MG MG . A MG 202 1_555 I O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 D MG MG . A MG 202 1_555 I O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 B OG SER 37 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc8 F O2B GDP . B GDP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc9 G MG MG . B MG 202 1_555 J O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 G MG MG . B MG 202 1_555 J O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 5US4 _atom_sites.fract_transf_matrix[1][1] 0.010658 _atom_sites.fract_transf_matrix[1][2] 0.006154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 1 GDP GDP . D 3 MG A 1 202 3 MG MG . E 4 GOL A 1 203 5 GOL GOL . F 2 GDP B 1 201 2 GDP GDP . G 3 MG B 1 202 4 MG MG . H 4 GOL B 1 203 6 GOL GOL . I 5 HOH A 1 301 279 HOH HOH . I 5 HOH A 2 302 61 HOH HOH . I 5 HOH A 3 303 188 HOH HOH . I 5 HOH A 4 304 122 HOH HOH . I 5 HOH A 5 305 239 HOH HOH . I 5 HOH A 6 306 139 HOH HOH . I 5 HOH A 7 307 138 HOH HOH . I 5 HOH A 8 308 271 HOH HOH . I 5 HOH A 9 309 142 HOH HOH . I 5 HOH A 10 310 124 HOH HOH . I 5 HOH A 11 311 100 HOH HOH . I 5 HOH A 12 312 278 HOH HOH . I 5 HOH A 13 313 17 HOH HOH . I 5 HOH A 14 314 117 HOH HOH . I 5 HOH A 15 315 175 HOH HOH . I 5 HOH A 16 316 234 HOH HOH . I 5 HOH A 17 317 260 HOH HOH . I 5 HOH A 18 318 9 HOH HOH . I 5 HOH A 19 319 232 HOH HOH . I 5 HOH A 20 320 212 HOH HOH . I 5 HOH A 21 321 207 HOH HOH . I 5 HOH A 22 322 258 HOH HOH . I 5 HOH A 23 323 211 HOH HOH . I 5 HOH A 24 324 182 HOH HOH . I 5 HOH A 25 325 64 HOH HOH . I 5 HOH A 26 326 44 HOH HOH . I 5 HOH A 27 327 51 HOH HOH . I 5 HOH A 28 328 16 HOH HOH . I 5 HOH A 29 329 185 HOH HOH . I 5 HOH A 30 330 53 HOH HOH . I 5 HOH A 31 331 59 HOH HOH . I 5 HOH A 32 332 179 HOH HOH . I 5 HOH A 33 333 273 HOH HOH . I 5 HOH A 34 334 186 HOH HOH . I 5 HOH A 35 335 245 HOH HOH . I 5 HOH A 36 336 66 HOH HOH . I 5 HOH A 37 337 29 HOH HOH . I 5 HOH A 38 338 123 HOH HOH . I 5 HOH A 39 339 263 HOH HOH . I 5 HOH A 40 340 24 HOH HOH . I 5 HOH A 41 341 2 HOH HOH . I 5 HOH A 42 342 10 HOH HOH . I 5 HOH A 43 343 241 HOH HOH . I 5 HOH A 44 344 125 HOH HOH . I 5 HOH A 45 345 255 HOH HOH . I 5 HOH A 46 346 163 HOH HOH . I 5 HOH A 47 347 30 HOH HOH . I 5 HOH A 48 348 231 HOH HOH . I 5 HOH A 49 349 72 HOH HOH . I 5 HOH A 50 350 203 HOH HOH . I 5 HOH A 51 351 235 HOH HOH . I 5 HOH A 52 352 180 HOH HOH . I 5 HOH A 53 353 19 HOH HOH . I 5 HOH A 54 354 27 HOH HOH . I 5 HOH A 55 355 14 HOH HOH . I 5 HOH A 56 356 31 HOH HOH . I 5 HOH A 57 357 233 HOH HOH . I 5 HOH A 58 358 160 HOH HOH . I 5 HOH A 59 359 98 HOH HOH . I 5 HOH A 60 360 200 HOH HOH . I 5 HOH A 61 361 220 HOH HOH . I 5 HOH A 62 362 274 HOH HOH . I 5 HOH A 63 363 50 HOH HOH . I 5 HOH A 64 364 221 HOH HOH . I 5 HOH A 65 365 36 HOH HOH . I 5 HOH A 66 366 190 HOH HOH . I 5 HOH A 67 367 238 HOH HOH . I 5 HOH A 68 368 261 HOH HOH . I 5 HOH A 69 369 7 HOH HOH . I 5 HOH A 70 370 85 HOH HOH . I 5 HOH A 71 371 101 HOH HOH . I 5 HOH A 72 372 93 HOH HOH . I 5 HOH A 73 373 201 HOH HOH . I 5 HOH A 74 374 205 HOH HOH . I 5 HOH A 75 375 5 HOH HOH . I 5 HOH A 76 376 39 HOH HOH . I 5 HOH A 77 377 90 HOH HOH . I 5 HOH A 78 378 48 HOH HOH . I 5 HOH A 79 379 242 HOH HOH . I 5 HOH A 80 380 95 HOH HOH . I 5 HOH A 81 381 181 HOH HOH . I 5 HOH A 82 382 20 HOH HOH . I 5 HOH A 83 383 56 HOH HOH . I 5 HOH A 84 384 162 HOH HOH . I 5 HOH A 85 385 214 HOH HOH . I 5 HOH A 86 386 75 HOH HOH . I 5 HOH A 87 388 159 HOH HOH . I 5 HOH A 88 389 23 HOH HOH . I 5 HOH A 89 390 223 HOH HOH . I 5 HOH A 90 391 210 HOH HOH . I 5 HOH A 91 392 132 HOH HOH . I 5 HOH A 92 393 275 HOH HOH . I 5 HOH A 93 394 103 HOH HOH . I 5 HOH A 94 395 81 HOH HOH . I 5 HOH A 95 396 206 HOH HOH . I 5 HOH A 96 397 246 HOH HOH . I 5 HOH A 97 398 259 HOH HOH . I 5 HOH A 98 399 82 HOH HOH . I 5 HOH A 99 400 183 HOH HOH . I 5 HOH A 100 401 176 HOH HOH . I 5 HOH A 101 402 240 HOH HOH . I 5 HOH A 102 403 199 HOH HOH . I 5 HOH A 103 404 71 HOH HOH . I 5 HOH A 104 405 86 HOH HOH . I 5 HOH A 105 406 187 HOH HOH . I 5 HOH A 106 407 177 HOH HOH . I 5 HOH A 107 408 243 HOH HOH . I 5 HOH A 108 409 257 HOH HOH . I 5 HOH A 109 410 244 HOH HOH . I 5 HOH A 110 411 225 HOH HOH . I 5 HOH A 111 412 222 HOH HOH . I 5 HOH A 112 413 209 HOH HOH . I 5 HOH A 113 414 96 HOH HOH . I 5 HOH A 114 415 224 HOH HOH . I 5 HOH A 115 416 87 HOH HOH . I 5 HOH A 116 417 161 HOH HOH . I 5 HOH A 117 418 178 HOH HOH . I 5 HOH A 118 419 113 HOH HOH . I 5 HOH A 119 421 109 HOH HOH . I 5 HOH A 120 422 208 HOH HOH . J 5 HOH B 1 301 277 HOH HOH . J 5 HOH B 2 302 269 HOH HOH . J 5 HOH B 3 303 158 HOH HOH . J 5 HOH B 4 304 119 HOH HOH . J 5 HOH B 5 305 215 HOH HOH . J 5 HOH B 6 306 106 HOH HOH . J 5 HOH B 7 307 143 HOH HOH . J 5 HOH B 8 308 149 HOH HOH . J 5 HOH B 9 309 137 HOH HOH . J 5 HOH B 10 310 141 HOH HOH . J 5 HOH B 11 311 144 HOH HOH . J 5 HOH B 12 312 37 HOH HOH . J 5 HOH B 13 313 8 HOH HOH . J 5 HOH B 14 314 115 HOH HOH . J 5 HOH B 15 315 168 HOH HOH . J 5 HOH B 16 316 18 HOH HOH . J 5 HOH B 17 317 167 HOH HOH . J 5 HOH B 18 318 120 HOH HOH . J 5 HOH B 19 319 191 HOH HOH . J 5 HOH B 20 320 45 HOH HOH . J 5 HOH B 21 321 217 HOH HOH . J 5 HOH B 22 322 150 HOH HOH . J 5 HOH B 23 323 147 HOH HOH . J 5 HOH B 24 324 114 HOH HOH . J 5 HOH B 25 325 136 HOH HOH . J 5 HOH B 26 326 145 HOH HOH . J 5 HOH B 27 327 266 HOH HOH . J 5 HOH B 28 328 62 HOH HOH . J 5 HOH B 29 329 155 HOH HOH . J 5 HOH B 30 330 227 HOH HOH . J 5 HOH B 31 331 248 HOH HOH . J 5 HOH B 32 332 49 HOH HOH . J 5 HOH B 33 333 38 HOH HOH . J 5 HOH B 34 334 67 HOH HOH . J 5 HOH B 35 335 58 HOH HOH . J 5 HOH B 36 336 15 HOH HOH . J 5 HOH B 37 337 146 HOH HOH . J 5 HOH B 38 338 65 HOH HOH . J 5 HOH B 39 339 57 HOH HOH . J 5 HOH B 40 340 28 HOH HOH . J 5 HOH B 41 341 12 HOH HOH . J 5 HOH B 42 342 3 HOH HOH . J 5 HOH B 43 343 127 HOH HOH . J 5 HOH B 44 344 26 HOH HOH . J 5 HOH B 45 345 228 HOH HOH . J 5 HOH B 46 346 83 HOH HOH . J 5 HOH B 47 347 134 HOH HOH . J 5 HOH B 48 348 148 HOH HOH . J 5 HOH B 49 349 11 HOH HOH . J 5 HOH B 50 350 202 HOH HOH . J 5 HOH B 51 351 192 HOH HOH . J 5 HOH B 52 352 47 HOH HOH . J 5 HOH B 53 353 84 HOH HOH . J 5 HOH B 54 354 265 HOH HOH . J 5 HOH B 55 355 74 HOH HOH . J 5 HOH B 56 356 218 HOH HOH . J 5 HOH B 57 357 270 HOH HOH . J 5 HOH B 58 358 6 HOH HOH . J 5 HOH B 59 359 250 HOH HOH . J 5 HOH B 60 360 268 HOH HOH . J 5 HOH B 61 361 213 HOH HOH . J 5 HOH B 62 362 42 HOH HOH . J 5 HOH B 63 363 43 HOH HOH . J 5 HOH B 64 364 25 HOH HOH . J 5 HOH B 65 365 153 HOH HOH . J 5 HOH B 66 366 251 HOH HOH . J 5 HOH B 67 367 52 HOH HOH . J 5 HOH B 68 368 130 HOH HOH . J 5 HOH B 69 369 204 HOH HOH . J 5 HOH B 70 370 189 HOH HOH . J 5 HOH B 71 371 34 HOH HOH . J 5 HOH B 72 372 249 HOH HOH . J 5 HOH B 73 373 33 HOH HOH . J 5 HOH B 74 374 63 HOH HOH . J 5 HOH B 75 375 69 HOH HOH . J 5 HOH B 76 376 216 HOH HOH . J 5 HOH B 77 377 76 HOH HOH . J 5 HOH B 78 378 135 HOH HOH . J 5 HOH B 79 379 4 HOH HOH . J 5 HOH B 80 380 102 HOH HOH . J 5 HOH B 81 381 272 HOH HOH . J 5 HOH B 82 382 22 HOH HOH . J 5 HOH B 83 383 267 HOH HOH . J 5 HOH B 84 384 107 HOH HOH . J 5 HOH B 85 385 91 HOH HOH . J 5 HOH B 86 386 151 HOH HOH . J 5 HOH B 87 387 89 HOH HOH . J 5 HOH B 88 388 13 HOH HOH . J 5 HOH B 89 389 116 HOH HOH . J 5 HOH B 90 390 253 HOH HOH . J 5 HOH B 91 391 97 HOH HOH . J 5 HOH B 92 392 237 HOH HOH . J 5 HOH B 93 393 164 HOH HOH . J 5 HOH B 94 394 194 HOH HOH . J 5 HOH B 95 395 152 HOH HOH . J 5 HOH B 96 396 104 HOH HOH . J 5 HOH B 97 397 247 HOH HOH . J 5 HOH B 98 398 105 HOH HOH . J 5 HOH B 99 399 165 HOH HOH . J 5 HOH B 100 400 230 HOH HOH . J 5 HOH B 101 401 252 HOH HOH . J 5 HOH B 102 402 92 HOH HOH . J 5 HOH B 103 403 264 HOH HOH . J 5 HOH B 104 404 236 HOH HOH . J 5 HOH B 105 405 140 HOH HOH . J 5 HOH B 106 406 157 HOH HOH . J 5 HOH B 107 407 229 HOH HOH . J 5 HOH B 108 408 80 HOH HOH . J 5 HOH B 109 409 226 HOH HOH . J 5 HOH B 110 410 219 HOH HOH . J 5 HOH B 111 411 73 HOH HOH . J 5 HOH B 112 412 169 HOH HOH . J 5 HOH B 113 413 133 HOH HOH . J 5 HOH B 114 414 154 HOH HOH . J 5 HOH B 115 415 108 HOH HOH . J 5 HOH B 116 416 156 HOH HOH . J 5 HOH B 117 417 262 HOH HOH . J 5 HOH B 118 418 193 HOH HOH . J 5 HOH B 119 419 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -40.082 18.483 -5.358 1 32.06 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . E 4 -39.986 19.846 -5.735 1 39.6 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . E 4 -39.182 18.197 -4.181 1 24.82 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . E 4 -39.363 19.079 -3.121 1 23.17 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . E 4 -37.708 18.172 -4.522 1 27.24 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . E 4 -37.324 17.466 -5.667 1 25.65 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #