data_5US6
#
_model_server_result.job_id            -UtF8E6zBheH3UiYA_0cBA 
_model_server_result.datetime_utc      '2024-11-22 07:42:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5us6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":1002}' 
#
_entry.id    5US6 
#
_exptl.entry_id    5US6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              167.119 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRIDINE-2,6-DICARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.1 
_cell.angle_gamma         90 
_cell.entry_id            5US6 
_cell.length_a            111.906 
_cell.length_b            115.845 
_cell.length_c            148.127 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5US6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,BB,CB,DB,EB 1 1 
E,F,G,H,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,FB,GB,HB,IB 2 1 
I,J,K,L,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,JB,KB,LB,MB 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 R N N 
? 3 U N N 
? 3 BA N N 
? 3 FA N N 
? 3 IA N N 
? 3 PA N N 
? 3 UA N N 
? 3 XA N N 
#
_chem_comp.formula           'C7 H5 N O4' 
_chem_comp.formula_weight    167.119 
_chem_comp.id                PDC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRIDINE-2,6-DICARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DIPICOLINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PDC doub 312 n y 
N1 C6 PDC sing 313 n y 
C2 C3 PDC sing 314 n y 
C2 C7 PDC sing 315 n n 
C3 C4 PDC doub 316 n y 
C3 H3 PDC sing 317 n n 
C4 C5 PDC sing 318 n y 
C4 H4 PDC sing 319 n n 
C5 C6 PDC doub 320 n y 
C5 H5 PDC sing 321 n n 
C6 C8 PDC sing 322 n n 
C7 O1 PDC doub 323 n n 
C7 O2 PDC sing 324 n n 
O2 HO2 PDC sing 325 n n 
C8 O3 PDC doub 326 n n 
C8 O4 PDC sing 327 n n 
O4 HO4 PDC sing 328 n n 
#
_atom_sites.entry_id                     5US6 
_atom_sites.fract_transf_matrix[1][1]    0.008936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000955 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008632 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006789 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 NAD A 1 1001 1001 NAD NAD . 
N 3 PDC A 1 1002 1002 PDC PDC . 
O 4 SO4 A 1 1003 17 SO4 SO4 . 
P 4 SO4 A 1 1004 20 SO4 SO4 . 
Q 2 NAD B 1 1001 1001 NAD NAD . 
R 3 PDC B 1 1002 1002 PDC PDC . 
S 4 SO4 B 1 1003 7 SO4 SO4 . 
T 2 NAD C 1 1001 1001 NAD NAD . 
U 3 PDC C 1 1002 1002 PDC PDC . 
V 4 SO4 C 1 1003 8 SO4 SO4 . 
W 4 SO4 D 1 301 1 SO4 SO4 . 
X 4 SO4 D 1 302 2 SO4 SO4 . 
Y 4 SO4 D 1 303 21 SO4 SO4 . 
Z 4 SO4 D 1 304 23 SO4 SO4 . 
AA 2 NAD E 1 1001 1001 NAD NAD . 
BA 3 PDC E 1 1002 1002 PDC PDC . 
CA 4 SO4 E 1 1003 9 SO4 SO4 . 
DA 4 SO4 E 1 1004 10 SO4 SO4 . 
EA 2 NAD F 1 1001 1001 NAD NAD . 
FA 3 PDC F 1 1002 1002 PDC PDC . 
GA 4 SO4 F 1 1003 11 SO4 SO4 . 
HA 2 NAD G 1 1001 1001 NAD NAD . 
IA 3 PDC G 1 1002 1002 PDC PDC . 
JA 4 SO4 G 1 1003 5 SO4 SO4 . 
KA 4 SO4 H 1 301 12 SO4 SO4 . 
LA 4 SO4 H 1 302 13 SO4 SO4 . 
MA 4 SO4 H 1 303 14 SO4 SO4 . 
NA 4 SO4 H 1 304 18 SO4 SO4 . 
OA 4 SO4 H 1 305 19 SO4 SO4 . 
PA 3 PDC I 1 301 1002 PDC PDC . 
QA 2 NAD I 1 302 1001 NAD NAD . 
RA 4 SO4 I 1 303 15 SO4 SO4 . 
SA 4 SO4 I 1 304 16 SO4 SO4 . 
TA 2 NAD J 1 1001 1001 NAD NAD . 
UA 3 PDC J 1 1002 1002 PDC PDC . 
VA 4 SO4 J 1 1003 4 SO4 SO4 . 
WA 2 NAD K 1 1001 1001 NAD NAD . 
XA 3 PDC K 1 1002 1002 PDC PDC . 
YA 4 SO4 K 1 1003 3 SO4 SO4 . 
ZA 4 SO4 K 1 1004 22 SO4 SO4 . 
AB 4 SO4 L 1 301 6 SO4 SO4 . 
BB 5 HOH A 1 1101 100 HOH HOH . 
BB 5 HOH A 2 1102 2 HOH HOH . 
BB 5 HOH A 3 1103 4 HOH HOH . 
BB 5 HOH A 4 1104 5 HOH HOH . 
BB 5 HOH A 5 1105 1 HOH HOH . 
BB 5 HOH A 6 1106 3 HOH HOH . 
BB 5 HOH A 7 1107 160 HOH HOH . 
CB 5 HOH B 1 1101 9 HOH HOH . 
CB 5 HOH B 2 1102 7 HOH HOH . 
CB 5 HOH B 3 1103 11 HOH HOH . 
CB 5 HOH B 4 1104 101 HOH HOH . 
CB 5 HOH B 5 1105 6 HOH HOH . 
CB 5 HOH B 6 1106 10 HOH HOH . 
CB 5 HOH B 7 1107 8 HOH HOH . 
DB 5 HOH C 1 1101 19 HOH HOH . 
DB 5 HOH C 2 1102 104 HOH HOH . 
DB 5 HOH C 3 1103 15 HOH HOH . 
DB 5 HOH C 4 1104 12 HOH HOH . 
DB 5 HOH C 5 1105 102 HOH HOH . 
DB 5 HOH C 6 1106 14 HOH HOH . 
DB 5 HOH C 7 1107 16 HOH HOH . 
DB 5 HOH C 8 1108 17 HOH HOH . 
DB 5 HOH C 9 1109 103 HOH HOH . 
DB 5 HOH C 10 1110 162 HOH HOH . 
DB 5 HOH C 11 1111 18 HOH HOH . 
DB 5 HOH C 12 1112 13 HOH HOH . 
DB 5 HOH C 13 1113 161 HOH HOH . 
EB 5 HOH D 1 401 111 HOH HOH . 
EB 5 HOH D 2 402 112 HOH HOH . 
EB 5 HOH D 3 403 26 HOH HOH . 
EB 5 HOH D 4 404 23 HOH HOH . 
EB 5 HOH D 5 405 110 HOH HOH . 
EB 5 HOH D 6 406 25 HOH HOH . 
EB 5 HOH D 7 407 107 HOH HOH . 
EB 5 HOH D 8 408 118 HOH HOH . 
EB 5 HOH D 9 409 20 HOH HOH . 
EB 5 HOH D 10 410 119 HOH HOH . 
EB 5 HOH D 11 411 105 HOH HOH . 
EB 5 HOH D 12 412 24 HOH HOH . 
EB 5 HOH D 13 413 117 HOH HOH . 
EB 5 HOH D 14 414 22 HOH HOH . 
EB 5 HOH D 15 415 116 HOH HOH . 
EB 5 HOH D 16 416 108 HOH HOH . 
EB 5 HOH D 17 417 114 HOH HOH . 
EB 5 HOH D 18 418 106 HOH HOH . 
EB 5 HOH D 19 419 113 HOH HOH . 
EB 5 HOH D 20 420 115 HOH HOH . 
EB 5 HOH D 21 421 109 HOH HOH . 
EB 5 HOH D 22 422 21 HOH HOH . 
FB 5 HOH E 1 1101 126 HOH HOH . 
FB 5 HOH E 2 1102 38 HOH HOH . 
FB 5 HOH E 3 1103 32 HOH HOH . 
FB 5 HOH E 4 1104 120 HOH HOH . 
FB 5 HOH E 5 1105 34 HOH HOH . 
FB 5 HOH E 6 1106 29 HOH HOH . 
FB 5 HOH E 7 1107 37 HOH HOH . 
FB 5 HOH E 8 1108 27 HOH HOH . 
FB 5 HOH E 9 1109 35 HOH HOH . 
FB 5 HOH E 10 1110 121 HOH HOH . 
FB 5 HOH E 11 1111 33 HOH HOH . 
FB 5 HOH E 12 1112 28 HOH HOH . 
FB 5 HOH E 13 1113 31 HOH HOH . 
FB 5 HOH E 14 1114 73 HOH HOH . 
FB 5 HOH E 15 1115 125 HOH HOH . 
FB 5 HOH E 16 1116 36 HOH HOH . 
FB 5 HOH E 17 1117 127 HOH HOH . 
FB 5 HOH E 18 1118 30 HOH HOH . 
FB 5 HOH E 19 1119 122 HOH HOH . 
FB 5 HOH E 20 1120 123 HOH HOH . 
FB 5 HOH E 21 1121 124 HOH HOH . 
GB 5 HOH F 1 1101 43 HOH HOH . 
GB 5 HOH F 2 1102 42 HOH HOH . 
GB 5 HOH F 3 1103 44 HOH HOH . 
GB 5 HOH F 4 1104 128 HOH HOH . 
GB 5 HOH F 5 1105 133 HOH HOH . 
GB 5 HOH F 6 1106 132 HOH HOH . 
GB 5 HOH F 7 1107 39 HOH HOH . 
GB 5 HOH F 8 1108 130 HOH HOH . 
GB 5 HOH F 9 1109 131 HOH HOH . 
GB 5 HOH F 10 1110 129 HOH HOH . 
GB 5 HOH F 11 1111 134 HOH HOH . 
GB 5 HOH F 12 1112 41 HOH HOH . 
GB 5 HOH F 13 1113 45 HOH HOH . 
GB 5 HOH F 14 1114 40 HOH HOH . 
HB 5 HOH G 1 1101 143 HOH HOH . 
HB 5 HOH G 2 1102 46 HOH HOH . 
HB 5 HOH G 3 1103 141 HOH HOH . 
HB 5 HOH G 4 1104 140 HOH HOH . 
HB 5 HOH G 5 1105 145 HOH HOH . 
HB 5 HOH G 6 1106 144 HOH HOH . 
HB 5 HOH G 7 1107 47 HOH HOH . 
HB 5 HOH G 8 1108 135 HOH HOH . 
HB 5 HOH G 9 1109 142 HOH HOH . 
HB 5 HOH G 10 1110 137 HOH HOH . 
HB 5 HOH G 11 1111 48 HOH HOH . 
HB 5 HOH G 12 1112 51 HOH HOH . 
HB 5 HOH G 13 1113 52 HOH HOH . 
HB 5 HOH G 14 1114 136 HOH HOH . 
HB 5 HOH G 15 1115 49 HOH HOH . 
HB 5 HOH G 16 1116 50 HOH HOH . 
HB 5 HOH G 17 1117 138 HOH HOH . 
HB 5 HOH G 18 1118 139 HOH HOH . 
IB 5 HOH H 1 401 57 HOH HOH . 
IB 5 HOH H 2 402 59 HOH HOH . 
IB 5 HOH H 3 403 60 HOH HOH . 
IB 5 HOH H 4 404 61 HOH HOH . 
IB 5 HOH H 5 405 146 HOH HOH . 
IB 5 HOH H 6 406 56 HOH HOH . 
IB 5 HOH H 7 407 54 HOH HOH . 
IB 5 HOH H 8 408 58 HOH HOH . 
IB 5 HOH H 9 409 53 HOH HOH . 
IB 5 HOH H 10 410 55 HOH HOH . 
JB 5 HOH I 1 401 150 HOH HOH . 
JB 5 HOH I 2 402 151 HOH HOH . 
JB 5 HOH I 3 403 70 HOH HOH . 
JB 5 HOH I 4 404 71 HOH HOH . 
JB 5 HOH I 5 405 69 HOH HOH . 
JB 5 HOH I 6 406 65 HOH HOH . 
JB 5 HOH I 7 407 68 HOH HOH . 
JB 5 HOH I 8 408 64 HOH HOH . 
JB 5 HOH I 9 409 67 HOH HOH . 
JB 5 HOH I 10 410 62 HOH HOH . 
JB 5 HOH I 11 411 148 HOH HOH . 
JB 5 HOH I 12 412 147 HOH HOH . 
JB 5 HOH I 13 413 63 HOH HOH . 
JB 5 HOH I 14 414 66 HOH HOH . 
JB 5 HOH I 15 415 79 HOH HOH . 
JB 5 HOH I 16 416 149 HOH HOH . 
JB 5 HOH I 17 417 90 HOH HOH . 
JB 5 HOH I 18 418 153 HOH HOH . 
JB 5 HOH I 19 419 152 HOH HOH . 
KB 5 HOH J 1 1101 77 HOH HOH . 
KB 5 HOH J 2 1102 75 HOH HOH . 
KB 5 HOH J 3 1103 154 HOH HOH . 
KB 5 HOH J 4 1104 156 HOH HOH . 
KB 5 HOH J 5 1105 158 HOH HOH . 
KB 5 HOH J 6 1106 157 HOH HOH . 
KB 5 HOH J 7 1107 78 HOH HOH . 
KB 5 HOH J 8 1108 80 HOH HOH . 
KB 5 HOH J 9 1109 74 HOH HOH . 
KB 5 HOH J 10 1110 76 HOH HOH . 
KB 5 HOH J 11 1111 72 HOH HOH . 
KB 5 HOH J 12 1112 155 HOH HOH . 
LB 5 HOH K 1 1101 85 HOH HOH . 
LB 5 HOH K 2 1102 87 HOH HOH . 
LB 5 HOH K 3 1103 82 HOH HOH . 
LB 5 HOH K 4 1104 86 HOH HOH . 
LB 5 HOH K 5 1105 91 HOH HOH . 
LB 5 HOH K 6 1106 83 HOH HOH . 
LB 5 HOH K 7 1107 89 HOH HOH . 
LB 5 HOH K 8 1108 81 HOH HOH . 
LB 5 HOH K 9 1109 88 HOH HOH . 
MB 5 HOH L 1 401 98 HOH HOH . 
MB 5 HOH L 2 402 93 HOH HOH . 
MB 5 HOH L 3 403 96 HOH HOH . 
MB 5 HOH L 4 404 99 HOH HOH . 
MB 5 HOH L 5 405 92 HOH HOH . 
MB 5 HOH L 6 406 159 HOH HOH . 
MB 5 HOH L 7 407 97 HOH HOH . 
MB 5 HOH L 8 408 95 HOH HOH . 
MB 5 HOH L 9 409 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PDC . . . UA 3 18.65 -22.972 19.046 1 72.06 ? N1 PDC 1002 J 1 
HETATM 2 C C2 PDC . . . UA 3 19.377 -23.55 20.028 1 70.99 ? C2 PDC 1002 J 1 
HETATM 3 C C3 PDC . . . UA 3 18.988 -23.467 21.354 1 73.89 ? C3 PDC 1002 J 1 
HETATM 4 C C4 PDC . . . UA 3 17.828 -22.783 21.646 1 73.58 ? C4 PDC 1002 J 1 
HETATM 5 C C5 PDC . . . UA 3 17.086 -22.193 20.644 1 69.1 ? C5 PDC 1002 J 1 
HETATM 6 C C6 PDC . . . UA 3 17.502 -22.294 19.329 1 71.43 ? C6 PDC 1002 J 1 
HETATM 7 C C7 PDC . . . UA 3 20.603 -24.319 19.714 1 71.19 ? C7 PDC 1002 J 1 
HETATM 8 O O1 PDC . . . UA 3 21.067 -24.265 18.555 1 67.21 ? O1 PDC 1002 J 1 
HETATM 9 O O2 PDC . . . UA 3 21.092 -25.045 20.617 1 70.13 ? O2 PDC 1002 J 1 
HETATM 10 C C8 PDC . . . UA 3 16.638 -21.673 18.277 1 69.37 ? C8 PDC 1002 J 1 
HETATM 11 O O3 PDC . . . UA 3 16.969 -21.886 17.091 1 66.47 ? O3 PDC 1002 J 1 
HETATM 12 O O4 PDC . . . UA 3 15.591 -21.02 18.614 1 77.66 ? O4 PDC 1002 J 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#