data_5USG # _model_server_result.job_id MtJktkF336CAujZXTm-QxA _model_server_result.datetime_utc '2024-10-18 21:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5usg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5USG # _exptl.entry_id 5USG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.2 _cell.angle_gamma 90 _cell.entry_id 5USG _cell.length_a 80.952 _cell.length_b 37.827 _cell.length_c 62.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5USG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 1 C DA 1 1_555 B P T5S 2 C T5S 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? covale ? covale2 B O3' T5S 2 C T5S 2 1_555 B P DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? covale ? covale3 B O3' DG 3 C DG 3 1_555 B P T5S 4 C T5S 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? covale ? covale4 B O3' T5S 4 C T5S 4 1_555 B P DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? metalc ? metalc1 A O3' A 6 B A 6 1_555 D MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 D MG MG . B MG 201 1_555 C OD1 ASP 17 A ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc3 D MG MG . B MG 201 1_555 C OE2 GLU 55 A GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 D MG MG . B MG 201 1_555 C OD1 ASN 78 A ASN 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc5 F O HOH . B HOH 301 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc6 F O HOH . B HOH 302 4_746 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 C OD2 ASP 17 A ASP 71 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 C OD1 ASP 138 A ASP 192 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 E MG MG . A MG 201 1_555 H O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 E MG MG . A MG 201 1_555 H O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? hydrog WATSON-CRICK hydrog1 A N3 C 2 B C 2 1_555 B N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 2 B C 2 1_555 B O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 2 B C 2 1_555 B N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 3 B G 3 1_555 B N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 3 B G 3 1_555 B O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 3 B G 3 1_555 B N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 A 4 B A 4 1_555 B N3 T5S 4 C T5S 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 A 4 B A 4 1_555 B O4 T5S 4 C T5S 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 C 5 B C 5 1_555 B N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 C 5 B C 5 1_555 B O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 C 5 B C 5 1_555 B N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 A 6 B A 6 1_555 B N3 T5S 2 C T5S 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 A 6 B A 6 1_555 B O4 T5S 2 C T5S 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5USG _atom_sites.fract_transf_matrix[1][1] 0.012353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG B 1 201 1 MG MG . E 4 MG A 1 201 2 MG MG . F 5 HOH B 1 301 77 HOH HOH . F 5 HOH B 2 302 2 HOH HOH . F 5 HOH B 3 303 74 HOH HOH . F 5 HOH B 4 304 5 HOH HOH . F 5 HOH B 5 305 1 HOH HOH . G 5 HOH C 1 101 20 HOH HOH . G 5 HOH C 2 102 21 HOH HOH . G 5 HOH C 3 103 73 HOH HOH . G 5 HOH C 4 104 19 HOH HOH . G 5 HOH C 5 105 22 HOH HOH . G 5 HOH C 6 106 50 HOH HOH . G 5 HOH C 7 107 49 HOH HOH . G 5 HOH C 8 108 23 HOH HOH . G 5 HOH C 9 109 72 HOH HOH . H 5 HOH A 1 301 26 HOH HOH . H 5 HOH A 2 302 32 HOH HOH . H 5 HOH A 3 303 56 HOH HOH . H 5 HOH A 4 304 62 HOH HOH . H 5 HOH A 5 305 63 HOH HOH . H 5 HOH A 6 306 38 HOH HOH . H 5 HOH A 7 307 60 HOH HOH . H 5 HOH A 8 308 46 HOH HOH . H 5 HOH A 9 309 4 HOH HOH . H 5 HOH A 10 310 30 HOH HOH . H 5 HOH A 11 311 41 HOH HOH . H 5 HOH A 12 312 43 HOH HOH . H 5 HOH A 13 313 76 HOH HOH . H 5 HOH A 14 314 68 HOH HOH . H 5 HOH A 15 315 25 HOH HOH . H 5 HOH A 16 316 13 HOH HOH . H 5 HOH A 17 317 9 HOH HOH . H 5 HOH A 18 318 65 HOH HOH . H 5 HOH A 19 319 75 HOH HOH . H 5 HOH A 20 320 24 HOH HOH . H 5 HOH A 21 321 11 HOH HOH . H 5 HOH A 22 322 48 HOH HOH . H 5 HOH A 23 323 42 HOH HOH . H 5 HOH A 24 324 34 HOH HOH . H 5 HOH A 25 325 69 HOH HOH . H 5 HOH A 26 326 12 HOH HOH . H 5 HOH A 27 327 37 HOH HOH . H 5 HOH A 28 328 7 HOH HOH . H 5 HOH A 29 329 29 HOH HOH . H 5 HOH A 30 330 6 HOH HOH . H 5 HOH A 31 331 57 HOH HOH . H 5 HOH A 32 332 15 HOH HOH . H 5 HOH A 33 333 61 HOH HOH . H 5 HOH A 34 334 18 HOH HOH . H 5 HOH A 35 335 53 HOH HOH . H 5 HOH A 36 336 40 HOH HOH . H 5 HOH A 37 337 17 HOH HOH . H 5 HOH A 38 338 31 HOH HOH . H 5 HOH A 39 339 14 HOH HOH . H 5 HOH A 40 340 58 HOH HOH . H 5 HOH A 41 341 36 HOH HOH . H 5 HOH A 42 342 39 HOH HOH . H 5 HOH A 43 343 51 HOH HOH . H 5 HOH A 44 344 47 HOH HOH . H 5 HOH A 45 345 55 HOH HOH . H 5 HOH A 46 346 70 HOH HOH . H 5 HOH A 47 347 10 HOH HOH . H 5 HOH A 48 348 64 HOH HOH . H 5 HOH A 49 349 16 HOH HOH . H 5 HOH A 50 350 66 HOH HOH . H 5 HOH A 51 351 35 HOH HOH . H 5 HOH A 52 352 8 HOH HOH . H 5 HOH A 53 353 52 HOH HOH . H 5 HOH A 54 354 71 HOH HOH . H 5 HOH A 55 355 27 HOH HOH . H 5 HOH A 56 356 45 HOH HOH . H 5 HOH A 57 357 28 HOH HOH . H 5 HOH A 58 358 33 HOH HOH . H 5 HOH A 59 359 44 HOH HOH . H 5 HOH A 60 360 67 HOH HOH . H 5 HOH A 61 361 59 HOH HOH . H 5 HOH A 62 362 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 94.249 _atom_site.Cartn_y -12.944 _atom_site.Cartn_z 19.764 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 506 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #