data_5USX # _model_server_result.job_id 99YfGuYpEb9kq5fZzDdg6g _model_server_result.datetime_utc '2024-12-26 12:04:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5usx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5USX # _exptl.entry_id 5USX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5USX _cell.length_a 64.626 _cell.length_b 98.302 _cell.length_c 119.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5USX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 136 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 139 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 139 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 337 n n PA O2A NAP sing 338 n n PA O5B NAP sing 339 n n PA O3 NAP sing 340 n n O2A HOA2 NAP sing 341 n n O5B C5B NAP sing 342 n n C5B C4B NAP sing 343 n n C5B H51A NAP sing 344 n n C5B H52A NAP sing 345 n n C4B O4B NAP sing 346 n n C4B C3B NAP sing 347 n n C4B H4B NAP sing 348 n n O4B C1B NAP sing 349 n n C3B O3B NAP sing 350 n n C3B C2B NAP sing 351 n n C3B H3B NAP sing 352 n n O3B HO3A NAP sing 353 n n C2B O2B NAP sing 354 n n C2B C1B NAP sing 355 n n C2B H2B NAP sing 356 n n O2B P2B NAP sing 357 n n C1B N9A NAP sing 358 n n C1B H1B NAP sing 359 n n N9A C8A NAP sing 360 n y N9A C4A NAP sing 361 n y C8A N7A NAP doub 362 n y C8A H8A NAP sing 363 n n N7A C5A NAP sing 364 n y C5A C6A NAP sing 365 n y C5A C4A NAP doub 366 n y C6A N6A NAP sing 367 n n C6A N1A NAP doub 368 n y N6A H61A NAP sing 369 n n N6A H62A NAP sing 370 n n N1A C2A NAP sing 371 n y C2A N3A NAP doub 372 n y C2A H2A NAP sing 373 n n N3A C4A NAP sing 374 n y O3 PN NAP sing 375 n n PN O1N NAP doub 376 n n PN O2N NAP sing 377 n n PN O5D NAP sing 378 n n O5D C5D NAP sing 379 n n C5D C4D NAP sing 380 n n C5D H51N NAP sing 381 n n C5D H52N NAP sing 382 n n C4D O4D NAP sing 383 n n C4D C3D NAP sing 384 n n C4D H4D NAP sing 385 n n O4D C1D NAP sing 386 n n C3D O3D NAP sing 387 n n C3D C2D NAP sing 388 n n C3D H3D NAP sing 389 n n O3D HO3N NAP sing 390 n n C2D O2D NAP sing 391 n n C2D C1D NAP sing 392 n n C2D H2D NAP sing 393 n n O2D HO2N NAP sing 394 n n C1D N1N NAP sing 395 n n C1D H1D NAP sing 396 n n N1N C2N NAP sing 397 n y N1N C6N NAP doub 398 n y C2N C3N NAP doub 399 n y C2N H2N NAP sing 400 n n C3N C7N NAP sing 401 n n C3N C4N NAP sing 402 n y C7N O7N NAP doub 403 n n C7N N7N NAP sing 404 n n N7N H71N NAP sing 405 n n N7N H72N NAP sing 406 n n C4N C5N NAP doub 407 n y C4N H4N NAP sing 408 n n C5N C6N NAP sing 409 n y C5N H5N NAP sing 410 n n C6N H6N NAP sing 411 n n P2B O1X NAP doub 412 n n P2B O2X NAP sing 413 n n P2B O3X NAP sing 414 n n O2X HOP2 NAP sing 415 n n O3X HOP3 NAP sing 416 n n # _atom_sites.entry_id 5USX _atom_sites.fract_transf_matrix[1][1] 0.015474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 FAD A 1 402 1 FAD FAD . E 2 NAP B 1 401 2 NAP NAP . F 3 FAD B 1 402 2 FAD FAD . G 4 EDO B 1 403 1 EDO EDO . H 4 EDO B 1 404 2 EDO EDO . I 5 HOH A 1 501 118 HOH HOH . I 5 HOH A 2 502 105 HOH HOH . I 5 HOH A 3 503 60 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 40 HOH HOH . I 5 HOH A 6 506 16 HOH HOH . I 5 HOH A 7 507 32 HOH HOH . I 5 HOH A 8 508 12 HOH HOH . I 5 HOH A 9 509 79 HOH HOH . I 5 HOH A 10 510 69 HOH HOH . I 5 HOH A 11 511 80 HOH HOH . I 5 HOH A 12 512 115 HOH HOH . I 5 HOH A 13 513 87 HOH HOH . I 5 HOH A 14 514 61 HOH HOH . I 5 HOH A 15 515 99 HOH HOH . I 5 HOH A 16 516 44 HOH HOH . I 5 HOH A 17 517 49 HOH HOH . I 5 HOH A 18 518 89 HOH HOH . I 5 HOH A 19 519 85 HOH HOH . I 5 HOH A 20 520 41 HOH HOH . I 5 HOH A 21 521 36 HOH HOH . I 5 HOH A 22 522 5 HOH HOH . I 5 HOH A 23 523 64 HOH HOH . I 5 HOH A 24 524 24 HOH HOH . I 5 HOH A 25 525 10 HOH HOH . I 5 HOH A 26 526 45 HOH HOH . I 5 HOH A 27 527 101 HOH HOH . I 5 HOH A 28 528 15 HOH HOH . I 5 HOH A 29 529 113 HOH HOH . I 5 HOH A 30 530 13 HOH HOH . I 5 HOH A 31 531 19 HOH HOH . I 5 HOH A 32 532 62 HOH HOH . I 5 HOH A 33 533 42 HOH HOH . I 5 HOH A 34 534 1 HOH HOH . I 5 HOH A 35 535 7 HOH HOH . I 5 HOH A 36 536 34 HOH HOH . I 5 HOH A 37 537 35 HOH HOH . I 5 HOH A 38 538 59 HOH HOH . I 5 HOH A 39 539 31 HOH HOH . I 5 HOH A 40 540 111 HOH HOH . I 5 HOH A 41 541 27 HOH HOH . I 5 HOH A 42 542 47 HOH HOH . I 5 HOH A 43 543 46 HOH HOH . I 5 HOH A 44 544 91 HOH HOH . I 5 HOH A 45 545 37 HOH HOH . I 5 HOH A 46 546 28 HOH HOH . I 5 HOH A 47 547 81 HOH HOH . I 5 HOH A 48 548 77 HOH HOH . I 5 HOH A 49 549 55 HOH HOH . I 5 HOH A 50 550 76 HOH HOH . I 5 HOH A 51 551 71 HOH HOH . I 5 HOH A 52 552 83 HOH HOH . I 5 HOH A 53 553 57 HOH HOH . I 5 HOH A 54 554 73 HOH HOH . I 5 HOH A 55 555 102 HOH HOH . I 5 HOH A 56 556 23 HOH HOH . I 5 HOH A 57 557 21 HOH HOH . I 5 HOH A 58 558 8 HOH HOH . I 5 HOH A 59 559 98 HOH HOH . I 5 HOH A 60 560 39 HOH HOH . I 5 HOH A 61 561 29 HOH HOH . I 5 HOH A 62 562 68 HOH HOH . I 5 HOH A 63 563 43 HOH HOH . I 5 HOH A 64 564 70 HOH HOH . I 5 HOH A 65 565 54 HOH HOH . I 5 HOH A 66 566 51 HOH HOH . I 5 HOH A 67 567 84 HOH HOH . I 5 HOH A 68 568 53 HOH HOH . I 5 HOH A 69 569 74 HOH HOH . I 5 HOH A 70 570 109 HOH HOH . I 5 HOH A 71 571 110 HOH HOH . I 5 HOH A 72 572 108 HOH HOH . I 5 HOH A 73 573 94 HOH HOH . I 5 HOH A 74 574 100 HOH HOH . I 5 HOH A 75 575 50 HOH HOH . I 5 HOH A 76 576 78 HOH HOH . J 5 HOH B 1 501 103 HOH HOH . J 5 HOH B 2 502 112 HOH HOH . J 5 HOH B 3 503 48 HOH HOH . J 5 HOH B 4 504 18 HOH HOH . J 5 HOH B 5 505 6 HOH HOH . J 5 HOH B 6 506 3 HOH HOH . J 5 HOH B 7 507 9 HOH HOH . J 5 HOH B 8 508 72 HOH HOH . J 5 HOH B 9 509 4 HOH HOH . J 5 HOH B 10 510 86 HOH HOH . J 5 HOH B 11 511 92 HOH HOH . J 5 HOH B 12 512 17 HOH HOH . J 5 HOH B 13 513 106 HOH HOH . J 5 HOH B 14 514 88 HOH HOH . J 5 HOH B 15 515 104 HOH HOH . J 5 HOH B 16 516 67 HOH HOH . J 5 HOH B 17 517 114 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 25 HOH HOH . J 5 HOH B 20 520 117 HOH HOH . J 5 HOH B 21 521 90 HOH HOH . J 5 HOH B 22 522 116 HOH HOH . J 5 HOH B 23 523 96 HOH HOH . J 5 HOH B 24 524 66 HOH HOH . J 5 HOH B 25 525 30 HOH HOH . J 5 HOH B 26 526 20 HOH HOH . J 5 HOH B 27 527 11 HOH HOH . J 5 HOH B 28 528 22 HOH HOH . J 5 HOH B 29 529 75 HOH HOH . J 5 HOH B 30 530 14 HOH HOH . J 5 HOH B 31 531 26 HOH HOH . J 5 HOH B 32 532 63 HOH HOH . J 5 HOH B 33 533 82 HOH HOH . J 5 HOH B 34 534 56 HOH HOH . J 5 HOH B 35 535 52 HOH HOH . J 5 HOH B 36 536 65 HOH HOH . J 5 HOH B 37 537 38 HOH HOH . J 5 HOH B 38 538 58 HOH HOH . J 5 HOH B 39 539 107 HOH HOH . J 5 HOH B 40 540 93 HOH HOH . J 5 HOH B 41 541 95 HOH HOH . J 5 HOH B 42 542 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 36.201 11.633 9.477 1 32.82 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . C 2 36.193 11.294 10.948 1 26.09 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . C 2 35.969 13.055 9.024 1 40.44 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . C 2 37.596 11.134 8.858 1 28.37 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . C 2 37.67 10.853 7.465 1 25.18 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . C 2 39.001 10.186 7.168 1 30.82 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . C 2 39.188 10.144 5.754 1 42.29 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . C 2 40.132 11.009 7.754 1 31.85 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . C 2 41.039 10.151 8.452 1 27.58 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . C 2 40.823 11.644 6.568 1 29.49 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . C 2 42.234 11.615 6.744 1 34.75 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . C 2 40.402 10.795 5.381 1 29.62 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . C 2 40.148 11.636 4.186 1 28.92 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . C 2 39.318 12.693 4.125 1 22.17 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . C 2 39.316 13.24 2.882 1 31.45 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . C 2 40.165 12.521 2.124 1 27.65 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . C 2 40.634 12.554 0.719 1 29.03 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . C 2 40.184 13.493 -0.147 1 34.71 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . C 2 41.529 11.617 0.333 1 32.34 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . C 2 41.985 10.679 1.182 1 31.72 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . C 2 41.602 10.589 2.468 1 26.62 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . C 2 40.712 11.467 2.989 1 25.3 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . C 2 35.175 10.675 8.684 1 39.1 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . C 2 34.228 9.616 9.44 1 27.55 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . C 2 35.115 8.565 10.064 1 24.93 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . C 2 33.121 9.204 8.501 1 35.21 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . C 2 33.597 10.53 10.601 1 45.76 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . C 2 32.19 10.646 10.781 1 50.37 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . C 2 31.938 11.182 12.182 1 50.53 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . C 2 31.132 10.236 12.884 1 54.15 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . C 2 33.245 11.337 12.942 1 54.28 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . C 2 33.317 12.637 13.536 1 50.09 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . C 2 33.216 10.279 14.024 1 51.79 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . C 2 33.623 10.833 15.279 1 61.01 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . C 2 31.772 9.809 14.087 1 52.45 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . C 2 31.74 8.351 14.155 1 48.07 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . C 2 31.774 7.754 15.351 1 50.74 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . C 2 31.748 6.37 15.45 1 55.12 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . C 2 31.787 5.717 16.8 1 66.12 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . C 2 31.718 6.412 17.801 1 58.68 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . C 2 31.892 4.391 16.871 1 79 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . C 2 31.69 5.603 14.294 1 49.21 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . C 2 31.655 6.247 13.064 1 50.8 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . C 2 31.684 7.636 13.023 1 46.03 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . C 2 42.948 12.791 7.578 1 31.69 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . C 2 42.824 12.351 9.017 1 34.3 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . C 2 44.361 12.796 7.047 1 35.12 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . C 2 42.142 14.019 7.229 1 37.25 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #