data_5USX # _model_server_result.job_id y5dPHKR_YVztimPAGDy03Q _model_server_result.datetime_utc '2024-11-10 01:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5usx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5USX # _exptl.entry_id 5USX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5USX _cell.length_a 64.626 _cell.length_b 98.302 _cell.length_c 119.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5USX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 136 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 139 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 139 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 5USX _atom_sites.fract_transf_matrix[1][1] 0.015474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 FAD A 1 402 1 FAD FAD . E 2 NAP B 1 401 2 NAP NAP . F 3 FAD B 1 402 2 FAD FAD . G 4 EDO B 1 403 1 EDO EDO . H 4 EDO B 1 404 2 EDO EDO . I 5 HOH A 1 501 118 HOH HOH . I 5 HOH A 2 502 105 HOH HOH . I 5 HOH A 3 503 60 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 40 HOH HOH . I 5 HOH A 6 506 16 HOH HOH . I 5 HOH A 7 507 32 HOH HOH . I 5 HOH A 8 508 12 HOH HOH . I 5 HOH A 9 509 79 HOH HOH . I 5 HOH A 10 510 69 HOH HOH . I 5 HOH A 11 511 80 HOH HOH . I 5 HOH A 12 512 115 HOH HOH . I 5 HOH A 13 513 87 HOH HOH . I 5 HOH A 14 514 61 HOH HOH . I 5 HOH A 15 515 99 HOH HOH . I 5 HOH A 16 516 44 HOH HOH . I 5 HOH A 17 517 49 HOH HOH . I 5 HOH A 18 518 89 HOH HOH . I 5 HOH A 19 519 85 HOH HOH . I 5 HOH A 20 520 41 HOH HOH . I 5 HOH A 21 521 36 HOH HOH . I 5 HOH A 22 522 5 HOH HOH . I 5 HOH A 23 523 64 HOH HOH . I 5 HOH A 24 524 24 HOH HOH . I 5 HOH A 25 525 10 HOH HOH . I 5 HOH A 26 526 45 HOH HOH . I 5 HOH A 27 527 101 HOH HOH . I 5 HOH A 28 528 15 HOH HOH . I 5 HOH A 29 529 113 HOH HOH . I 5 HOH A 30 530 13 HOH HOH . I 5 HOH A 31 531 19 HOH HOH . I 5 HOH A 32 532 62 HOH HOH . I 5 HOH A 33 533 42 HOH HOH . I 5 HOH A 34 534 1 HOH HOH . I 5 HOH A 35 535 7 HOH HOH . I 5 HOH A 36 536 34 HOH HOH . I 5 HOH A 37 537 35 HOH HOH . I 5 HOH A 38 538 59 HOH HOH . I 5 HOH A 39 539 31 HOH HOH . I 5 HOH A 40 540 111 HOH HOH . I 5 HOH A 41 541 27 HOH HOH . I 5 HOH A 42 542 47 HOH HOH . I 5 HOH A 43 543 46 HOH HOH . I 5 HOH A 44 544 91 HOH HOH . I 5 HOH A 45 545 37 HOH HOH . I 5 HOH A 46 546 28 HOH HOH . I 5 HOH A 47 547 81 HOH HOH . I 5 HOH A 48 548 77 HOH HOH . I 5 HOH A 49 549 55 HOH HOH . I 5 HOH A 50 550 76 HOH HOH . I 5 HOH A 51 551 71 HOH HOH . I 5 HOH A 52 552 83 HOH HOH . I 5 HOH A 53 553 57 HOH HOH . I 5 HOH A 54 554 73 HOH HOH . I 5 HOH A 55 555 102 HOH HOH . I 5 HOH A 56 556 23 HOH HOH . I 5 HOH A 57 557 21 HOH HOH . I 5 HOH A 58 558 8 HOH HOH . I 5 HOH A 59 559 98 HOH HOH . I 5 HOH A 60 560 39 HOH HOH . I 5 HOH A 61 561 29 HOH HOH . I 5 HOH A 62 562 68 HOH HOH . I 5 HOH A 63 563 43 HOH HOH . I 5 HOH A 64 564 70 HOH HOH . I 5 HOH A 65 565 54 HOH HOH . I 5 HOH A 66 566 51 HOH HOH . I 5 HOH A 67 567 84 HOH HOH . I 5 HOH A 68 568 53 HOH HOH . I 5 HOH A 69 569 74 HOH HOH . I 5 HOH A 70 570 109 HOH HOH . I 5 HOH A 71 571 110 HOH HOH . I 5 HOH A 72 572 108 HOH HOH . I 5 HOH A 73 573 94 HOH HOH . I 5 HOH A 74 574 100 HOH HOH . I 5 HOH A 75 575 50 HOH HOH . I 5 HOH A 76 576 78 HOH HOH . J 5 HOH B 1 501 103 HOH HOH . J 5 HOH B 2 502 112 HOH HOH . J 5 HOH B 3 503 48 HOH HOH . J 5 HOH B 4 504 18 HOH HOH . J 5 HOH B 5 505 6 HOH HOH . J 5 HOH B 6 506 3 HOH HOH . J 5 HOH B 7 507 9 HOH HOH . J 5 HOH B 8 508 72 HOH HOH . J 5 HOH B 9 509 4 HOH HOH . J 5 HOH B 10 510 86 HOH HOH . J 5 HOH B 11 511 92 HOH HOH . J 5 HOH B 12 512 17 HOH HOH . J 5 HOH B 13 513 106 HOH HOH . J 5 HOH B 14 514 88 HOH HOH . J 5 HOH B 15 515 104 HOH HOH . J 5 HOH B 16 516 67 HOH HOH . J 5 HOH B 17 517 114 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 25 HOH HOH . J 5 HOH B 20 520 117 HOH HOH . J 5 HOH B 21 521 90 HOH HOH . J 5 HOH B 22 522 116 HOH HOH . J 5 HOH B 23 523 96 HOH HOH . J 5 HOH B 24 524 66 HOH HOH . J 5 HOH B 25 525 30 HOH HOH . J 5 HOH B 26 526 20 HOH HOH . J 5 HOH B 27 527 11 HOH HOH . J 5 HOH B 28 528 22 HOH HOH . J 5 HOH B 29 529 75 HOH HOH . J 5 HOH B 30 530 14 HOH HOH . J 5 HOH B 31 531 26 HOH HOH . J 5 HOH B 32 532 63 HOH HOH . J 5 HOH B 33 533 82 HOH HOH . J 5 HOH B 34 534 56 HOH HOH . J 5 HOH B 35 535 52 HOH HOH . J 5 HOH B 36 536 65 HOH HOH . J 5 HOH B 37 537 38 HOH HOH . J 5 HOH B 38 538 58 HOH HOH . J 5 HOH B 39 539 107 HOH HOH . J 5 HOH B 40 540 93 HOH HOH . J 5 HOH B 41 541 95 HOH HOH . J 5 HOH B 42 542 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 3 24.104 15.863 38.004 1 55.12 ? PA FAD 402 B 1 HETATM 2 O O1A FAD . . . F 3 23.299 14.786 37.316 1 61.6 ? O1A FAD 402 B 1 HETATM 3 O O2A FAD . . . F 3 23.474 16.701 39.088 1 58.87 ? O2A FAD 402 B 1 HETATM 4 O O5B FAD . . . F 3 25.437 15.199 38.606 1 55.09 ? O5B FAD 402 B 1 HETATM 5 C C5B FAD . . . F 3 26.264 15.944 39.493 1 52.79 ? C5B FAD 402 B 1 HETATM 6 C C4B FAD . . . F 3 27.222 14.99 40.186 1 56.04 ? C4B FAD 402 B 1 HETATM 7 O O4B FAD . . . F 3 28.4 15.687 40.595 1 65.28 ? O4B FAD 402 B 1 HETATM 8 C C3B FAD . . . F 3 26.585 14.396 41.431 1 54.1 ? C3B FAD 402 B 1 HETATM 9 O O3B FAD . . . F 3 26.496 12.975 41.304 1 56.38 ? O3B FAD 402 B 1 HETATM 10 C C2B FAD . . . F 3 27.506 14.765 42.576 1 55.04 ? C2B FAD 402 B 1 HETATM 11 O O2B FAD . . . F 3 27.775 13.615 43.381 1 56.34 ? O2B FAD 402 B 1 HETATM 12 C C1B FAD . . . F 3 28.776 15.265 41.906 1 60.35 ? C1B FAD 402 B 1 HETATM 13 N N9A FAD . . . F 3 29.378 16.384 42.673 1 56.72 ? N9A FAD 402 B 1 HETATM 14 C C8A FAD . . . F 3 28.752 17.512 43.061 1 58.32 ? C8A FAD 402 B 1 HETATM 15 N N7A FAD . . . F 3 29.593 18.325 43.751 1 60.57 ? N7A FAD 402 B 1 HETATM 16 C C5A FAD . . . F 3 30.788 17.709 43.815 1 60.58 ? C5A FAD 402 B 1 HETATM 17 C C6A FAD . . . F 3 32.117 18.011 44.397 1 56.11 ? C6A FAD 402 B 1 HETATM 18 N N6A FAD . . . F 3 32.341 19.166 45.067 1 58.77 ? N6A FAD 402 B 1 HETATM 19 N N1A FAD . . . F 3 33.098 17.094 44.237 1 55.19 ? N1A FAD 402 B 1 HETATM 20 C C2A FAD . . . F 3 32.888 15.942 43.573 1 58.46 ? C2A FAD 402 B 1 HETATM 21 N N3A FAD . . . F 3 31.71 15.604 43.019 1 51.65 ? N3A FAD 402 B 1 HETATM 22 C C4A FAD . . . F 3 30.639 16.429 43.107 1 58.43 ? C4A FAD 402 B 1 HETATM 23 N N1 FAD . . . F 3 16.1 15.66 33.342 1 48.72 ? N1 FAD 402 B 1 HETATM 24 C C2 FAD . . . F 3 15.522 14.943 32.347 1 51.64 ? C2 FAD 402 B 1 HETATM 25 O O2 FAD . . . F 3 16.049 14.968 31.214 1 45.02 ? O2 FAD 402 B 1 HETATM 26 N N3 FAD . . . F 3 14.408 14.212 32.533 1 65.41 ? N3 FAD 402 B 1 HETATM 27 C C4 FAD . . . F 3 13.792 14.14 33.72 1 64.32 ? C4 FAD 402 B 1 HETATM 28 O O4 FAD . . . F 3 12.758 13.451 33.863 1 66.23 ? O4 FAD 402 B 1 HETATM 29 C C4X FAD . . . F 3 14.363 14.896 34.861 1 60.1 ? C4X FAD 402 B 1 HETATM 30 N N5 FAD . . . F 3 13.799 14.873 36.089 1 59.39 ? N5 FAD 402 B 1 HETATM 31 C C5X FAD . . . F 3 14.342 15.573 37.113 1 63.7 ? C5X FAD 402 B 1 HETATM 32 C C6 FAD . . . F 3 13.743 15.536 38.367 1 55.91 ? C6 FAD 402 B 1 HETATM 33 C C7 FAD . . . F 3 14.294 16.249 39.425 1 59.85 ? C7 FAD 402 B 1 HETATM 34 C C7M FAD . . . F 3 13.64 16.203 40.78 1 54.51 ? C7M FAD 402 B 1 HETATM 35 C C8 FAD . . . F 3 15.525 17.058 39.217 1 72.96 ? C8 FAD 402 B 1 HETATM 36 C C8M FAD . . . F 3 16.122 17.832 40.362 1 78.96 ? C8M FAD 402 B 1 HETATM 37 C C9 FAD . . . F 3 16.126 17.098 37.965 1 69.64 ? C9 FAD 402 B 1 HETATM 38 C C9A FAD . . . F 3 15.577 16.384 36.906 1 69.66 ? C9A FAD 402 B 1 HETATM 39 N N10 FAD . . . F 3 16.183 16.421 35.634 1 65.85 ? N10 FAD 402 B 1 HETATM 40 C C10 FAD . . . F 3 15.591 15.68 34.592 1 59.22 ? C10 FAD 402 B 1 HETATM 41 C C1' FAD . . . F 3 17.397 17.218 35.423 1 61.66 ? C1' FAD 402 B 1 HETATM 42 C C2' FAD . . . F 3 18.605 16.324 35.165 1 60.52 ? C2' FAD 402 B 1 HETATM 43 O O2' FAD . . . F 3 18.723 15.35 36.209 1 57.39 ? O2' FAD 402 B 1 HETATM 44 C C3' FAD . . . F 3 19.879 17.155 35.093 1 65.6 ? C3' FAD 402 B 1 HETATM 45 O O3' FAD . . . F 3 19.766 18.109 34.032 1 73.99 ? O3' FAD 402 B 1 HETATM 46 C C4' FAD . . . F 3 21.088 16.269 34.839 1 62.67 ? C4' FAD 402 B 1 HETATM 47 O O4' FAD . . . F 3 20.976 15.073 35.619 1 70.1 ? O4' FAD 402 B 1 HETATM 48 C C5' FAD . . . F 3 22.371 16.999 35.208 1 55.4 ? C5' FAD 402 B 1 HETATM 49 O O5' FAD . . . F 3 23.487 16.238 34.754 1 51.52 ? O5' FAD 402 B 1 HETATM 50 P P FAD . . . F 3 24.962 16.456 35.362 1 38.27 ? P FAD 402 B 1 HETATM 51 O O1P FAD . . . F 3 25.579 17.652 34.683 1 40.06 ? O1P FAD 402 B 1 HETATM 52 O O2P FAD . . . F 3 25.685 15.132 35.355 1 29.54 ? O2P FAD 402 B 1 HETATM 53 O O3P FAD . . . F 3 24.723 16.865 36.902 1 62.08 ? O3P FAD 402 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #