data_5USX # _model_server_result.job_id EYwUPtJU9XjBoM79scTF5g _model_server_result.datetime_utc '2024-12-26 12:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5usx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 5USX # _exptl.entry_id 5USX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5USX _cell.length_a 64.626 _cell.length_b 98.302 _cell.length_c 119.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5USX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 136 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 139 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 139 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5USX _atom_sites.fract_transf_matrix[1][1] 0.015474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 FAD A 1 402 1 FAD FAD . E 2 NAP B 1 401 2 NAP NAP . F 3 FAD B 1 402 2 FAD FAD . G 4 EDO B 1 403 1 EDO EDO . H 4 EDO B 1 404 2 EDO EDO . I 5 HOH A 1 501 118 HOH HOH . I 5 HOH A 2 502 105 HOH HOH . I 5 HOH A 3 503 60 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 40 HOH HOH . I 5 HOH A 6 506 16 HOH HOH . I 5 HOH A 7 507 32 HOH HOH . I 5 HOH A 8 508 12 HOH HOH . I 5 HOH A 9 509 79 HOH HOH . I 5 HOH A 10 510 69 HOH HOH . I 5 HOH A 11 511 80 HOH HOH . I 5 HOH A 12 512 115 HOH HOH . I 5 HOH A 13 513 87 HOH HOH . I 5 HOH A 14 514 61 HOH HOH . I 5 HOH A 15 515 99 HOH HOH . I 5 HOH A 16 516 44 HOH HOH . I 5 HOH A 17 517 49 HOH HOH . I 5 HOH A 18 518 89 HOH HOH . I 5 HOH A 19 519 85 HOH HOH . I 5 HOH A 20 520 41 HOH HOH . I 5 HOH A 21 521 36 HOH HOH . I 5 HOH A 22 522 5 HOH HOH . I 5 HOH A 23 523 64 HOH HOH . I 5 HOH A 24 524 24 HOH HOH . I 5 HOH A 25 525 10 HOH HOH . I 5 HOH A 26 526 45 HOH HOH . I 5 HOH A 27 527 101 HOH HOH . I 5 HOH A 28 528 15 HOH HOH . I 5 HOH A 29 529 113 HOH HOH . I 5 HOH A 30 530 13 HOH HOH . I 5 HOH A 31 531 19 HOH HOH . I 5 HOH A 32 532 62 HOH HOH . I 5 HOH A 33 533 42 HOH HOH . I 5 HOH A 34 534 1 HOH HOH . I 5 HOH A 35 535 7 HOH HOH . I 5 HOH A 36 536 34 HOH HOH . I 5 HOH A 37 537 35 HOH HOH . I 5 HOH A 38 538 59 HOH HOH . I 5 HOH A 39 539 31 HOH HOH . I 5 HOH A 40 540 111 HOH HOH . I 5 HOH A 41 541 27 HOH HOH . I 5 HOH A 42 542 47 HOH HOH . I 5 HOH A 43 543 46 HOH HOH . I 5 HOH A 44 544 91 HOH HOH . I 5 HOH A 45 545 37 HOH HOH . I 5 HOH A 46 546 28 HOH HOH . I 5 HOH A 47 547 81 HOH HOH . I 5 HOH A 48 548 77 HOH HOH . I 5 HOH A 49 549 55 HOH HOH . I 5 HOH A 50 550 76 HOH HOH . I 5 HOH A 51 551 71 HOH HOH . I 5 HOH A 52 552 83 HOH HOH . I 5 HOH A 53 553 57 HOH HOH . I 5 HOH A 54 554 73 HOH HOH . I 5 HOH A 55 555 102 HOH HOH . I 5 HOH A 56 556 23 HOH HOH . I 5 HOH A 57 557 21 HOH HOH . I 5 HOH A 58 558 8 HOH HOH . I 5 HOH A 59 559 98 HOH HOH . I 5 HOH A 60 560 39 HOH HOH . I 5 HOH A 61 561 29 HOH HOH . I 5 HOH A 62 562 68 HOH HOH . I 5 HOH A 63 563 43 HOH HOH . I 5 HOH A 64 564 70 HOH HOH . I 5 HOH A 65 565 54 HOH HOH . I 5 HOH A 66 566 51 HOH HOH . I 5 HOH A 67 567 84 HOH HOH . I 5 HOH A 68 568 53 HOH HOH . I 5 HOH A 69 569 74 HOH HOH . I 5 HOH A 70 570 109 HOH HOH . I 5 HOH A 71 571 110 HOH HOH . I 5 HOH A 72 572 108 HOH HOH . I 5 HOH A 73 573 94 HOH HOH . I 5 HOH A 74 574 100 HOH HOH . I 5 HOH A 75 575 50 HOH HOH . I 5 HOH A 76 576 78 HOH HOH . J 5 HOH B 1 501 103 HOH HOH . J 5 HOH B 2 502 112 HOH HOH . J 5 HOH B 3 503 48 HOH HOH . J 5 HOH B 4 504 18 HOH HOH . J 5 HOH B 5 505 6 HOH HOH . J 5 HOH B 6 506 3 HOH HOH . J 5 HOH B 7 507 9 HOH HOH . J 5 HOH B 8 508 72 HOH HOH . J 5 HOH B 9 509 4 HOH HOH . J 5 HOH B 10 510 86 HOH HOH . J 5 HOH B 11 511 92 HOH HOH . J 5 HOH B 12 512 17 HOH HOH . J 5 HOH B 13 513 106 HOH HOH . J 5 HOH B 14 514 88 HOH HOH . J 5 HOH B 15 515 104 HOH HOH . J 5 HOH B 16 516 67 HOH HOH . J 5 HOH B 17 517 114 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 25 HOH HOH . J 5 HOH B 20 520 117 HOH HOH . J 5 HOH B 21 521 90 HOH HOH . J 5 HOH B 22 522 116 HOH HOH . J 5 HOH B 23 523 96 HOH HOH . J 5 HOH B 24 524 66 HOH HOH . J 5 HOH B 25 525 30 HOH HOH . J 5 HOH B 26 526 20 HOH HOH . J 5 HOH B 27 527 11 HOH HOH . J 5 HOH B 28 528 22 HOH HOH . J 5 HOH B 29 529 75 HOH HOH . J 5 HOH B 30 530 14 HOH HOH . J 5 HOH B 31 531 26 HOH HOH . J 5 HOH B 32 532 63 HOH HOH . J 5 HOH B 33 533 82 HOH HOH . J 5 HOH B 34 534 56 HOH HOH . J 5 HOH B 35 535 52 HOH HOH . J 5 HOH B 36 536 65 HOH HOH . J 5 HOH B 37 537 38 HOH HOH . J 5 HOH B 38 538 58 HOH HOH . J 5 HOH B 39 539 107 HOH HOH . J 5 HOH B 40 540 93 HOH HOH . J 5 HOH B 41 541 95 HOH HOH . J 5 HOH B 42 542 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 26.106 24.933 23.901 1 56.61 ? C1 EDO 403 B 1 HETATM 2 O O1 EDO . . . G 4 24.859 24.971 24.603 1 47.27 ? O1 EDO 403 B 1 HETATM 3 C C2 EDO . . . G 4 27.205 24.466 24.848 1 58.84 ? C2 EDO 403 B 1 HETATM 4 O O2 EDO . . . G 4 28.442 24.374 24.132 1 59.87 ? O2 EDO 403 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #