data_5UT6 # _model_server_result.job_id Gd6tK4zypIT2LnTFN-eDyQ _model_server_result.datetime_utc '2025-01-10 09:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ut6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5UT6 # _exptl.entry_id 5UT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.24 _cell.angle_gamma 90 _cell.entry_id 5UT6 _cell.length_a 44.371 _cell.length_b 57.642 _cell.length_c 60.682 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 5UT6 _atom_sites.fract_transf_matrix[1][1] 0.022537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00831 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8MY A 1 901 1 8MY LIG . C 3 GOL A 1 902 1 GOL GOL . D 3 GOL A 1 903 2 GOL GOL . E 3 GOL A 1 904 3 GOL GOL . F 3 GOL A 1 905 4 GOL GOL . G 3 GOL A 1 906 5 GOL GOL . H 4 DMS A 1 907 1 DMS DMS . I 5 ACT A 1 908 1 ACT ACT . J 6 HOH A 1 1001 231 HOH HOH . J 6 HOH A 2 1002 27 HOH HOH . J 6 HOH A 3 1003 233 HOH HOH . J 6 HOH A 4 1004 227 HOH HOH . J 6 HOH A 5 1005 45 HOH HOH . J 6 HOH A 6 1006 146 HOH HOH . J 6 HOH A 7 1007 273 HOH HOH . J 6 HOH A 8 1008 201 HOH HOH . J 6 HOH A 9 1009 188 HOH HOH . J 6 HOH A 10 1010 279 HOH HOH . J 6 HOH A 11 1011 175 HOH HOH . J 6 HOH A 12 1012 236 HOH HOH . J 6 HOH A 13 1013 135 HOH HOH . J 6 HOH A 14 1014 53 HOH HOH . J 6 HOH A 15 1015 130 HOH HOH . J 6 HOH A 16 1016 28 HOH HOH . J 6 HOH A 17 1017 229 HOH HOH . J 6 HOH A 18 1018 103 HOH HOH . J 6 HOH A 19 1019 70 HOH HOH . J 6 HOH A 20 1020 122 HOH HOH . J 6 HOH A 21 1021 84 HOH HOH . J 6 HOH A 22 1022 241 HOH HOH . J 6 HOH A 23 1023 86 HOH HOH . J 6 HOH A 24 1024 98 HOH HOH . J 6 HOH A 25 1025 267 HOH HOH . J 6 HOH A 26 1026 117 HOH HOH . J 6 HOH A 27 1027 195 HOH HOH . J 6 HOH A 28 1028 100 HOH HOH . J 6 HOH A 29 1029 126 HOH HOH . J 6 HOH A 30 1030 275 HOH HOH . J 6 HOH A 31 1031 18 HOH HOH . J 6 HOH A 32 1032 21 HOH HOH . J 6 HOH A 33 1033 138 HOH HOH . J 6 HOH A 34 1034 6 HOH HOH . J 6 HOH A 35 1035 157 HOH HOH . J 6 HOH A 36 1036 89 HOH HOH . J 6 HOH A 37 1037 225 HOH HOH . J 6 HOH A 38 1038 153 HOH HOH . J 6 HOH A 39 1039 65 HOH HOH . J 6 HOH A 40 1040 142 HOH HOH . J 6 HOH A 41 1041 90 HOH HOH . J 6 HOH A 42 1042 88 HOH HOH . J 6 HOH A 43 1043 67 HOH HOH . J 6 HOH A 44 1044 187 HOH HOH . J 6 HOH A 45 1045 68 HOH HOH . J 6 HOH A 46 1046 25 HOH HOH . J 6 HOH A 47 1047 220 HOH HOH . J 6 HOH A 48 1048 179 HOH HOH . J 6 HOH A 49 1049 3 HOH HOH . J 6 HOH A 50 1050 217 HOH HOH . J 6 HOH A 51 1051 137 HOH HOH . J 6 HOH A 52 1052 256 HOH HOH . J 6 HOH A 53 1053 148 HOH HOH . J 6 HOH A 54 1054 149 HOH HOH . J 6 HOH A 55 1055 59 HOH HOH . J 6 HOH A 56 1056 57 HOH HOH . J 6 HOH A 57 1057 161 HOH HOH . J 6 HOH A 58 1058 194 HOH HOH . J 6 HOH A 59 1059 93 HOH HOH . J 6 HOH A 60 1060 33 HOH HOH . J 6 HOH A 61 1061 72 HOH HOH . J 6 HOH A 62 1062 204 HOH HOH . J 6 HOH A 63 1063 35 HOH HOH . J 6 HOH A 64 1064 46 HOH HOH . J 6 HOH A 65 1065 247 HOH HOH . J 6 HOH A 66 1066 22 HOH HOH . J 6 HOH A 67 1067 10 HOH HOH . J 6 HOH A 68 1068 23 HOH HOH . J 6 HOH A 69 1069 81 HOH HOH . J 6 HOH A 70 1070 99 HOH HOH . J 6 HOH A 71 1071 200 HOH HOH . J 6 HOH A 72 1072 32 HOH HOH . J 6 HOH A 73 1073 75 HOH HOH . J 6 HOH A 74 1074 92 HOH HOH . J 6 HOH A 75 1075 63 HOH HOH . J 6 HOH A 76 1076 41 HOH HOH . J 6 HOH A 77 1077 19 HOH HOH . J 6 HOH A 78 1078 248 HOH HOH . J 6 HOH A 79 1079 26 HOH HOH . J 6 HOH A 80 1080 190 HOH HOH . J 6 HOH A 81 1081 237 HOH HOH . J 6 HOH A 82 1082 91 HOH HOH . J 6 HOH A 83 1083 56 HOH HOH . J 6 HOH A 84 1084 102 HOH HOH . J 6 HOH A 85 1085 2 HOH HOH . J 6 HOH A 86 1086 85 HOH HOH . J 6 HOH A 87 1087 133 HOH HOH . J 6 HOH A 88 1088 87 HOH HOH . J 6 HOH A 89 1089 55 HOH HOH . J 6 HOH A 90 1090 80 HOH HOH . J 6 HOH A 91 1091 8 HOH HOH . J 6 HOH A 92 1092 128 HOH HOH . J 6 HOH A 93 1093 164 HOH HOH . J 6 HOH A 94 1094 150 HOH HOH . J 6 HOH A 95 1095 44 HOH HOH . J 6 HOH A 96 1096 94 HOH HOH . J 6 HOH A 97 1097 39 HOH HOH . J 6 HOH A 98 1098 5 HOH HOH . J 6 HOH A 99 1099 15 HOH HOH . J 6 HOH A 100 1100 66 HOH HOH . J 6 HOH A 101 1101 30 HOH HOH . J 6 HOH A 102 1102 11 HOH HOH . J 6 HOH A 103 1103 250 HOH HOH . J 6 HOH A 104 1104 62 HOH HOH . J 6 HOH A 105 1105 193 HOH HOH . J 6 HOH A 106 1106 69 HOH HOH . J 6 HOH A 107 1107 111 HOH HOH . J 6 HOH A 108 1108 36 HOH HOH . J 6 HOH A 109 1109 109 HOH HOH . J 6 HOH A 110 1110 34 HOH HOH . J 6 HOH A 111 1111 238 HOH HOH . J 6 HOH A 112 1112 79 HOH HOH . J 6 HOH A 113 1113 239 HOH HOH . J 6 HOH A 114 1114 197 HOH HOH . J 6 HOH A 115 1115 95 HOH HOH . J 6 HOH A 116 1116 129 HOH HOH . J 6 HOH A 117 1117 106 HOH HOH . J 6 HOH A 118 1118 159 HOH HOH . J 6 HOH A 119 1119 16 HOH HOH . J 6 HOH A 120 1120 143 HOH HOH . J 6 HOH A 121 1121 61 HOH HOH . J 6 HOH A 122 1122 58 HOH HOH . J 6 HOH A 123 1123 82 HOH HOH . J 6 HOH A 124 1124 202 HOH HOH . J 6 HOH A 125 1125 132 HOH HOH . J 6 HOH A 126 1126 60 HOH HOH . J 6 HOH A 127 1127 240 HOH HOH . J 6 HOH A 128 1128 144 HOH HOH . J 6 HOH A 129 1129 141 HOH HOH . J 6 HOH A 130 1130 152 HOH HOH . J 6 HOH A 131 1131 24 HOH HOH . J 6 HOH A 132 1132 31 HOH HOH . J 6 HOH A 133 1133 192 HOH HOH . J 6 HOH A 134 1134 12 HOH HOH . J 6 HOH A 135 1135 162 HOH HOH . J 6 HOH A 136 1136 7 HOH HOH . J 6 HOH A 137 1137 131 HOH HOH . J 6 HOH A 138 1138 199 HOH HOH . J 6 HOH A 139 1139 1 HOH HOH . J 6 HOH A 140 1140 40 HOH HOH . J 6 HOH A 141 1141 271 HOH HOH . J 6 HOH A 142 1142 20 HOH HOH . J 6 HOH A 143 1143 97 HOH HOH . J 6 HOH A 144 1144 77 HOH HOH . J 6 HOH A 145 1145 214 HOH HOH . J 6 HOH A 146 1146 14 HOH HOH . J 6 HOH A 147 1147 245 HOH HOH . J 6 HOH A 148 1148 47 HOH HOH . J 6 HOH A 149 1149 232 HOH HOH . J 6 HOH A 150 1150 29 HOH HOH . J 6 HOH A 151 1151 168 HOH HOH . J 6 HOH A 152 1152 121 HOH HOH . J 6 HOH A 153 1153 73 HOH HOH . J 6 HOH A 154 1154 37 HOH HOH . J 6 HOH A 155 1155 9 HOH HOH . J 6 HOH A 156 1156 4 HOH HOH . J 6 HOH A 157 1157 156 HOH HOH . J 6 HOH A 158 1158 254 HOH HOH . J 6 HOH A 159 1159 54 HOH HOH . J 6 HOH A 160 1160 173 HOH HOH . J 6 HOH A 161 1161 52 HOH HOH . J 6 HOH A 162 1162 189 HOH HOH . J 6 HOH A 163 1163 203 HOH HOH . J 6 HOH A 164 1164 134 HOH HOH . J 6 HOH A 165 1165 184 HOH HOH . J 6 HOH A 166 1166 182 HOH HOH . J 6 HOH A 167 1167 74 HOH HOH . J 6 HOH A 168 1168 224 HOH HOH . J 6 HOH A 169 1169 48 HOH HOH . J 6 HOH A 170 1170 249 HOH HOH . J 6 HOH A 171 1171 64 HOH HOH . J 6 HOH A 172 1172 218 HOH HOH . J 6 HOH A 173 1173 274 HOH HOH . J 6 HOH A 174 1174 257 HOH HOH . J 6 HOH A 175 1175 76 HOH HOH . J 6 HOH A 176 1176 101 HOH HOH . J 6 HOH A 177 1177 113 HOH HOH . J 6 HOH A 178 1178 276 HOH HOH . J 6 HOH A 179 1179 17 HOH HOH . J 6 HOH A 180 1180 124 HOH HOH . J 6 HOH A 181 1181 139 HOH HOH . J 6 HOH A 182 1182 266 HOH HOH . J 6 HOH A 183 1183 277 HOH HOH . J 6 HOH A 184 1184 185 HOH HOH . J 6 HOH A 185 1185 38 HOH HOH . J 6 HOH A 186 1186 49 HOH HOH . J 6 HOH A 187 1187 125 HOH HOH . J 6 HOH A 188 1188 78 HOH HOH . J 6 HOH A 189 1189 114 HOH HOH . J 6 HOH A 190 1190 83 HOH HOH . J 6 HOH A 191 1191 222 HOH HOH . J 6 HOH A 192 1192 212 HOH HOH . J 6 HOH A 193 1193 96 HOH HOH . J 6 HOH A 194 1194 104 HOH HOH . J 6 HOH A 195 1195 244 HOH HOH . J 6 HOH A 196 1196 13 HOH HOH . J 6 HOH A 197 1197 166 HOH HOH . J 6 HOH A 198 1198 167 HOH HOH . J 6 HOH A 199 1199 272 HOH HOH . J 6 HOH A 200 1200 230 HOH HOH . J 6 HOH A 201 1201 253 HOH HOH . J 6 HOH A 202 1202 155 HOH HOH . J 6 HOH A 203 1203 42 HOH HOH . J 6 HOH A 204 1204 177 HOH HOH . J 6 HOH A 205 1205 178 HOH HOH . J 6 HOH A 206 1206 191 HOH HOH . J 6 HOH A 207 1207 258 HOH HOH . J 6 HOH A 208 1208 136 HOH HOH . J 6 HOH A 209 1209 263 HOH HOH . J 6 HOH A 210 1210 221 HOH HOH . J 6 HOH A 211 1211 158 HOH HOH . J 6 HOH A 212 1212 235 HOH HOH . J 6 HOH A 213 1213 205 HOH HOH . J 6 HOH A 214 1214 196 HOH HOH . J 6 HOH A 215 1215 262 HOH HOH . J 6 HOH A 216 1216 260 HOH HOH . J 6 HOH A 217 1217 251 HOH HOH . J 6 HOH A 218 1218 280 HOH HOH . J 6 HOH A 219 1219 110 HOH HOH . J 6 HOH A 220 1220 171 HOH HOH . J 6 HOH A 221 1221 151 HOH HOH . J 6 HOH A 222 1222 119 HOH HOH . J 6 HOH A 223 1223 172 HOH HOH . J 6 HOH A 224 1224 183 HOH HOH . J 6 HOH A 225 1225 268 HOH HOH . J 6 HOH A 226 1226 120 HOH HOH . J 6 HOH A 227 1227 108 HOH HOH . J 6 HOH A 228 1228 206 HOH HOH . J 6 HOH A 229 1229 255 HOH HOH . J 6 HOH A 230 1230 259 HOH HOH . J 6 HOH A 231 1231 145 HOH HOH . J 6 HOH A 232 1232 270 HOH HOH . J 6 HOH A 233 1233 186 HOH HOH . J 6 HOH A 234 1234 211 HOH HOH . J 6 HOH A 235 1235 281 HOH HOH . J 6 HOH A 236 1236 107 HOH HOH . J 6 HOH A 237 1237 269 HOH HOH . J 6 HOH A 238 1238 242 HOH HOH . J 6 HOH A 239 1239 243 HOH HOH . J 6 HOH A 240 1240 123 HOH HOH . J 6 HOH A 241 1241 265 HOH HOH . J 6 HOH A 242 1242 215 HOH HOH . J 6 HOH A 243 1243 252 HOH HOH . J 6 HOH A 244 1244 43 HOH HOH . J 6 HOH A 245 1245 198 HOH HOH . J 6 HOH A 246 1246 223 HOH HOH . J 6 HOH A 247 1247 226 HOH HOH . J 6 HOH A 248 1248 213 HOH HOH . J 6 HOH A 249 1249 112 HOH HOH . J 6 HOH A 250 1250 210 HOH HOH . J 6 HOH A 251 1251 228 HOH HOH . J 6 HOH A 252 1252 181 HOH HOH . J 6 HOH A 253 1253 278 HOH HOH . J 6 HOH A 254 1254 176 HOH HOH . J 6 HOH A 255 1255 216 HOH HOH . J 6 HOH A 256 1256 219 HOH HOH . J 6 HOH A 257 1257 118 HOH HOH . J 6 HOH A 258 1258 246 HOH HOH . J 6 HOH A 259 1259 174 HOH HOH . J 6 HOH A 260 1260 208 HOH HOH . J 6 HOH A 261 1261 71 HOH HOH . J 6 HOH A 262 1262 165 HOH HOH . J 6 HOH A 263 1263 105 HOH HOH . J 6 HOH A 264 1264 140 HOH HOH . J 6 HOH A 265 1265 115 HOH HOH . J 6 HOH A 266 1266 163 HOH HOH . J 6 HOH A 267 1267 209 HOH HOH . J 6 HOH A 268 1268 170 HOH HOH . J 6 HOH A 269 1269 234 HOH HOH . J 6 HOH A 270 1270 264 HOH HOH . J 6 HOH A 271 1271 207 HOH HOH . J 6 HOH A 272 1272 261 HOH HOH . J 6 HOH A 273 1273 147 HOH HOH . J 6 HOH A 274 1274 160 HOH HOH . J 6 HOH A 275 1275 51 HOH HOH . J 6 HOH A 276 1276 180 HOH HOH . J 6 HOH A 277 1277 116 HOH HOH . J 6 HOH A 278 1278 50 HOH HOH . J 6 HOH A 279 1279 154 HOH HOH . J 6 HOH A 280 1280 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -21.962 1.249 75.786 1 30.83 ? C1 GOL 902 A 1 HETATM 2 O O1 GOL . . . C 3 -21.336 2.471 76.065 1 40.68 ? O1 GOL 902 A 1 HETATM 3 C C2 GOL . . . C 3 -23.092 1.104 76.783 1 23.59 ? C2 GOL 902 A 1 HETATM 4 O O2 GOL . . . C 3 -22.808 1.965 77.839 1 28.27 ? O2 GOL 902 A 1 HETATM 5 C C3 GOL . . . C 3 -24.296 1.713 76.081 1 30.86 ? C3 GOL 902 A 1 HETATM 6 O O3 GOL . . . C 3 -25.438 1.41 76.837 1 41.6 ? O3 GOL 902 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 466 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #