data_5UT9 # _model_server_result.job_id IZuhEWmDU-3YEWqO36fWFA _model_server_result.datetime_utc '2024-11-24 00:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ut9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":213}' # _entry.id 5UT9 # _exptl.entry_id 5UT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UT9 _cell.length_a 90.229 _cell.length_b 90.229 _cell.length_c 45.22 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D O2 NO2 . A NO2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5UT9 _atom_sites.fract_transf_matrix[1][1] 0.011083 _atom_sites.fract_transf_matrix[1][2] 0.006399 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 NO2 A 1 203 5657 NO2 NO2 . E 4 NO2 A 1 204 5657 NO2 NO2 . F 4 NO2 A 1 205 5657 NO2 NO2 . G 4 NO2 A 1 206 5657 NO2 NO2 . H 4 NO2 A 1 207 5657 NO2 NO2 . I 3 SO4 A 1 208 6920 SO4 SO4 . J 4 NO2 A 1 209 5657 NO2 NO2 . K 4 NO2 A 1 210 5657 NO2 NO2 . L 3 SO4 A 1 211 6920 SO4 SO4 . M 4 NO2 A 1 212 5657 NO2 NO2 . N 5 GOL A 1 213 3968 GOL GOL . O 6 HOH A 1 301 132 HOH HOH . O 6 HOH A 2 302 103 HOH HOH . O 6 HOH A 3 303 154 HOH HOH . O 6 HOH A 4 304 121 HOH HOH . O 6 HOH A 5 305 34 HOH HOH . O 6 HOH A 6 306 130 HOH HOH . O 6 HOH A 7 307 143 HOH HOH . O 6 HOH A 8 308 68 HOH HOH . O 6 HOH A 9 309 107 HOH HOH . O 6 HOH A 10 310 127 HOH HOH . O 6 HOH A 11 311 124 HOH HOH . O 6 HOH A 12 312 79 HOH HOH . O 6 HOH A 13 313 122 HOH HOH . O 6 HOH A 14 314 138 HOH HOH . O 6 HOH A 15 315 31 HOH HOH . O 6 HOH A 16 316 73 HOH HOH . O 6 HOH A 17 317 123 HOH HOH . O 6 HOH A 18 318 78 HOH HOH . O 6 HOH A 19 319 150 HOH HOH . O 6 HOH A 20 320 53 HOH HOH . O 6 HOH A 21 321 63 HOH HOH . O 6 HOH A 22 322 55 HOH HOH . O 6 HOH A 23 323 75 HOH HOH . O 6 HOH A 24 324 77 HOH HOH . O 6 HOH A 25 325 92 HOH HOH . O 6 HOH A 26 326 52 HOH HOH . O 6 HOH A 27 327 22 HOH HOH . O 6 HOH A 28 328 42 HOH HOH . O 6 HOH A 29 329 131 HOH HOH . O 6 HOH A 30 330 21 HOH HOH . O 6 HOH A 31 331 108 HOH HOH . O 6 HOH A 32 332 104 HOH HOH . O 6 HOH A 33 333 8 HOH HOH . O 6 HOH A 34 334 37 HOH HOH . O 6 HOH A 35 335 14 HOH HOH . O 6 HOH A 36 336 156 HOH HOH . O 6 HOH A 37 337 35 HOH HOH . O 6 HOH A 38 338 155 HOH HOH . O 6 HOH A 39 339 162 HOH HOH . O 6 HOH A 40 340 24 HOH HOH . O 6 HOH A 41 341 47 HOH HOH . O 6 HOH A 42 342 87 HOH HOH . O 6 HOH A 43 343 41 HOH HOH . O 6 HOH A 44 344 110 HOH HOH . O 6 HOH A 45 345 23 HOH HOH . O 6 HOH A 46 346 50 HOH HOH . O 6 HOH A 47 347 1 HOH HOH . O 6 HOH A 48 348 61 HOH HOH . O 6 HOH A 49 349 4 HOH HOH . O 6 HOH A 50 350 84 HOH HOH . O 6 HOH A 51 351 91 HOH HOH . O 6 HOH A 52 352 99 HOH HOH . O 6 HOH A 53 353 158 HOH HOH . O 6 HOH A 54 354 51 HOH HOH . O 6 HOH A 55 355 17 HOH HOH . O 6 HOH A 56 356 95 HOH HOH . O 6 HOH A 57 357 49 HOH HOH . O 6 HOH A 58 358 90 HOH HOH . O 6 HOH A 59 359 40 HOH HOH . O 6 HOH A 60 360 146 HOH HOH . O 6 HOH A 61 361 45 HOH HOH . O 6 HOH A 62 362 27 HOH HOH . O 6 HOH A 63 363 54 HOH HOH . O 6 HOH A 64 364 5 HOH HOH . O 6 HOH A 65 365 159 HOH HOH . O 6 HOH A 66 366 2 HOH HOH . O 6 HOH A 67 367 56 HOH HOH . O 6 HOH A 68 368 109 HOH HOH . O 6 HOH A 69 369 18 HOH HOH . O 6 HOH A 70 370 25 HOH HOH . O 6 HOH A 71 371 20 HOH HOH . O 6 HOH A 72 372 134 HOH HOH . O 6 HOH A 73 373 11 HOH HOH . O 6 HOH A 74 374 149 HOH HOH . O 6 HOH A 75 375 15 HOH HOH . O 6 HOH A 76 376 10 HOH HOH . O 6 HOH A 77 377 148 HOH HOH . O 6 HOH A 78 378 86 HOH HOH . O 6 HOH A 79 379 70 HOH HOH . O 6 HOH A 80 380 142 HOH HOH . O 6 HOH A 81 381 120 HOH HOH . O 6 HOH A 82 382 39 HOH HOH . O 6 HOH A 83 383 106 HOH HOH . O 6 HOH A 84 384 144 HOH HOH . O 6 HOH A 85 385 13 HOH HOH . O 6 HOH A 86 386 161 HOH HOH . O 6 HOH A 87 387 72 HOH HOH . O 6 HOH A 88 388 48 HOH HOH . O 6 HOH A 89 389 26 HOH HOH . O 6 HOH A 90 390 126 HOH HOH . O 6 HOH A 91 391 65 HOH HOH . O 6 HOH A 92 392 9 HOH HOH . O 6 HOH A 93 393 100 HOH HOH . O 6 HOH A 94 394 38 HOH HOH . O 6 HOH A 95 395 32 HOH HOH . O 6 HOH A 96 396 64 HOH HOH . O 6 HOH A 97 397 129 HOH HOH . O 6 HOH A 98 398 7 HOH HOH . O 6 HOH A 99 399 88 HOH HOH . O 6 HOH A 100 400 16 HOH HOH . O 6 HOH A 101 401 105 HOH HOH . O 6 HOH A 102 402 43 HOH HOH . O 6 HOH A 103 403 74 HOH HOH . O 6 HOH A 104 404 46 HOH HOH . O 6 HOH A 105 405 140 HOH HOH . O 6 HOH A 106 406 94 HOH HOH . O 6 HOH A 107 407 6 HOH HOH . O 6 HOH A 108 408 44 HOH HOH . O 6 HOH A 109 409 67 HOH HOH . O 6 HOH A 110 410 19 HOH HOH . O 6 HOH A 111 411 12 HOH HOH . O 6 HOH A 112 412 3 HOH HOH . O 6 HOH A 113 413 29 HOH HOH . O 6 HOH A 114 414 133 HOH HOH . O 6 HOH A 115 415 59 HOH HOH . O 6 HOH A 116 416 153 HOH HOH . O 6 HOH A 117 417 30 HOH HOH . O 6 HOH A 118 418 81 HOH HOH . O 6 HOH A 119 419 28 HOH HOH . O 6 HOH A 120 420 163 HOH HOH . O 6 HOH A 121 421 98 HOH HOH . O 6 HOH A 122 422 136 HOH HOH . O 6 HOH A 123 423 57 HOH HOH . O 6 HOH A 124 424 69 HOH HOH . O 6 HOH A 125 425 151 HOH HOH . O 6 HOH A 126 426 66 HOH HOH . O 6 HOH A 127 427 71 HOH HOH . O 6 HOH A 128 428 80 HOH HOH . O 6 HOH A 129 429 113 HOH HOH . O 6 HOH A 130 430 141 HOH HOH . O 6 HOH A 131 431 145 HOH HOH . O 6 HOH A 132 432 83 HOH HOH . O 6 HOH A 133 433 152 HOH HOH . O 6 HOH A 134 434 125 HOH HOH . O 6 HOH A 135 435 85 HOH HOH . O 6 HOH A 136 436 137 HOH HOH . O 6 HOH A 137 437 135 HOH HOH . O 6 HOH A 138 438 62 HOH HOH . O 6 HOH A 139 439 60 HOH HOH . O 6 HOH A 140 440 160 HOH HOH . O 6 HOH A 141 441 118 HOH HOH . O 6 HOH A 142 442 157 HOH HOH . O 6 HOH A 143 443 97 HOH HOH . O 6 HOH A 144 444 36 HOH HOH . O 6 HOH A 145 445 76 HOH HOH . O 6 HOH A 146 446 58 HOH HOH . O 6 HOH A 147 447 119 HOH HOH . O 6 HOH A 148 448 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 5 57.036 -4.507 -8.709 1 43.89 ? C1 GOL 213 A 1 HETATM 2 O O1 GOL . . . N 5 58.396 -4.874 -8.574 1 42.04 ? O1 GOL 213 A 1 HETATM 3 C C2 GOL . . . N 5 56.828 -3.414 -7.666 1 40.54 ? C2 GOL 213 A 1 HETATM 4 O O2 GOL . . . N 5 57.693 -3.746 -6.518 1 45.46 ? O2 GOL 213 A 1 HETATM 5 C C3 GOL . . . N 5 55.427 -3.136 -7.107 1 30.03 ? C3 GOL 213 A 1 HETATM 6 O O3 GOL . . . N 5 54.134 -3.369 -7.628 1 22.12 ? O3 GOL 213 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #