data_5UTA # _model_server_result.job_id yCXI6oBBkAQDNtoJddukgA _model_server_result.datetime_utc '2024-11-13 04:44:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5UTA # _exptl.entry_id 5UTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UTA _cell.length_a 90.388 _cell.length_b 90.388 _cell.length_c 45.244 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D O2 NO2 . A NO2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5UTA _atom_sites.fract_transf_matrix[1][1] 0.011063 _atom_sites.fract_transf_matrix[1][2] 0.006387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 NO2 A 1 203 5657 NO2 NO2 . E 4 NO2 A 1 204 5657 NO2 NO2 . F 4 NO2 A 1 205 5657 NO2 NO2 . G 4 NO2 A 1 206 5657 NO2 NO2 . H 4 NO2 A 1 207 5657 NO2 NO2 . I 4 NO2 A 1 208 5657 NO2 NO2 . J 4 NO2 A 1 209 5657 NO2 NO2 . K 4 NO2 A 1 210 5657 NO2 NO2 . L 3 SO4 A 1 211 6920 SO4 SO4 . M 4 NO2 A 1 212 5657 NO2 NO2 . N 5 GOL A 1 213 3968 GOL GOL . O 5 GOL A 1 214 3968 GOL GOL . P 4 NO2 A 1 215 5657 NO2 NO2 . Q 6 HOH A 1 301 115 HOH HOH . Q 6 HOH A 2 302 59 HOH HOH . Q 6 HOH A 3 303 61 HOH HOH . Q 6 HOH A 4 304 105 HOH HOH . Q 6 HOH A 5 305 75 HOH HOH . Q 6 HOH A 6 306 64 HOH HOH . Q 6 HOH A 7 307 99 HOH HOH . Q 6 HOH A 8 308 68 HOH HOH . Q 6 HOH A 9 309 102 HOH HOH . Q 6 HOH A 10 310 49 HOH HOH . Q 6 HOH A 11 311 109 HOH HOH . Q 6 HOH A 12 312 31 HOH HOH . Q 6 HOH A 13 313 104 HOH HOH . Q 6 HOH A 14 314 38 HOH HOH . Q 6 HOH A 15 315 90 HOH HOH . Q 6 HOH A 16 316 17 HOH HOH . Q 6 HOH A 17 317 25 HOH HOH . Q 6 HOH A 18 318 53 HOH HOH . Q 6 HOH A 19 319 36 HOH HOH . Q 6 HOH A 20 320 93 HOH HOH . Q 6 HOH A 21 321 54 HOH HOH . Q 6 HOH A 22 322 47 HOH HOH . Q 6 HOH A 23 323 46 HOH HOH . Q 6 HOH A 24 324 100 HOH HOH . Q 6 HOH A 25 325 116 HOH HOH . Q 6 HOH A 26 326 4 HOH HOH . Q 6 HOH A 27 327 20 HOH HOH . Q 6 HOH A 28 328 23 HOH HOH . Q 6 HOH A 29 329 94 HOH HOH . Q 6 HOH A 30 330 11 HOH HOH . Q 6 HOH A 31 331 58 HOH HOH . Q 6 HOH A 32 332 19 HOH HOH . Q 6 HOH A 33 333 51 HOH HOH . Q 6 HOH A 34 334 40 HOH HOH . Q 6 HOH A 35 335 107 HOH HOH . Q 6 HOH A 36 336 3 HOH HOH . Q 6 HOH A 37 337 65 HOH HOH . Q 6 HOH A 38 338 2 HOH HOH . Q 6 HOH A 39 339 52 HOH HOH . Q 6 HOH A 40 340 26 HOH HOH . Q 6 HOH A 41 341 50 HOH HOH . Q 6 HOH A 42 342 111 HOH HOH . Q 6 HOH A 43 343 27 HOH HOH . Q 6 HOH A 44 344 13 HOH HOH . Q 6 HOH A 45 345 21 HOH HOH . Q 6 HOH A 46 346 5 HOH HOH . Q 6 HOH A 47 347 14 HOH HOH . Q 6 HOH A 48 348 7 HOH HOH . Q 6 HOH A 49 349 37 HOH HOH . Q 6 HOH A 50 350 66 HOH HOH . Q 6 HOH A 51 351 55 HOH HOH . Q 6 HOH A 52 352 70 HOH HOH . Q 6 HOH A 53 353 63 HOH HOH . Q 6 HOH A 54 354 16 HOH HOH . Q 6 HOH A 55 355 57 HOH HOH . Q 6 HOH A 56 356 113 HOH HOH . Q 6 HOH A 57 357 24 HOH HOH . Q 6 HOH A 58 358 1 HOH HOH . Q 6 HOH A 59 359 9 HOH HOH . Q 6 HOH A 60 360 39 HOH HOH . Q 6 HOH A 61 361 96 HOH HOH . Q 6 HOH A 62 362 74 HOH HOH . Q 6 HOH A 63 363 18 HOH HOH . Q 6 HOH A 64 364 15 HOH HOH . Q 6 HOH A 65 365 89 HOH HOH . Q 6 HOH A 66 366 114 HOH HOH . Q 6 HOH A 67 367 79 HOH HOH . Q 6 HOH A 68 368 71 HOH HOH . Q 6 HOH A 69 369 67 HOH HOH . Q 6 HOH A 70 370 98 HOH HOH . Q 6 HOH A 71 371 73 HOH HOH . Q 6 HOH A 72 372 28 HOH HOH . Q 6 HOH A 73 373 97 HOH HOH . Q 6 HOH A 74 374 60 HOH HOH . Q 6 HOH A 75 375 95 HOH HOH . Q 6 HOH A 76 376 34 HOH HOH . Q 6 HOH A 77 377 22 HOH HOH . Q 6 HOH A 78 378 29 HOH HOH . Q 6 HOH A 79 379 33 HOH HOH . Q 6 HOH A 80 380 86 HOH HOH . Q 6 HOH A 81 381 119 HOH HOH . Q 6 HOH A 82 382 87 HOH HOH . Q 6 HOH A 83 383 43 HOH HOH . Q 6 HOH A 84 384 110 HOH HOH . Q 6 HOH A 85 385 72 HOH HOH . Q 6 HOH A 86 386 82 HOH HOH . Q 6 HOH A 87 387 84 HOH HOH . Q 6 HOH A 88 388 76 HOH HOH . Q 6 HOH A 89 389 101 HOH HOH . Q 6 HOH A 90 390 108 HOH HOH . Q 6 HOH A 91 391 56 HOH HOH . Q 6 HOH A 92 392 106 HOH HOH . Q 6 HOH A 93 393 41 HOH HOH . Q 6 HOH A 94 394 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 82.895 80.473 8.095 1 15.58 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 82.09 83.376 4.287 1 15.62 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 77.602 84.246 5.851 1 15.89 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 78.437 81.346 9.638 1 15.51 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 83.062 81.195 6.919 1 16.46 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 84.226 81.225 6.115 1 17.15 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 83.988 82.077 5.078 1 16.29 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 82.691 82.528 5.198 1 14.88 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 84.931 82.373 3.939 1 14.87 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 85.547 80.464 6.283 1 18.04 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 85.597 79.244 5.318 1 19.92 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 84.328 78.372 5.429 1 21.06 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 84.032 77.751 6.521 1 24.68 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 83.573 78.365 4.415 1 21.66 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 80.802 83.877 4.399 1 14.75 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 80.186 84.768 3.437 1 16.77 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 78.898 85.031 3.895 1 15.99 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 78.773 84.279 5.108 1 15.61 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 80.832 85.312 2.203 1 16.31 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 77.84 85.942 3.425 1 17.89 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 78.2 87.115 2.914 1 19.38 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 77.457 83.565 7.045 1 15.66 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 76.367 83.714 7.923 1 17.94 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 76.589 82.905 8.998 1 18.1 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 77.823 82.253 8.773 1 16.28 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 75.15 84.603 7.724 1 17.46 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 75.779 82.717 10.262 1 18.8 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 74.666 83.297 10.681 1 21.16 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 79.719 80.897 9.485 1 14.31 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 80.334 80 10.472 1 16.29 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 81.574 79.79 10.072 1 16.62 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 81.702 80.523 8.812 1 14.14 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 79.679 79.464 11.712 1 19.43 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 82.663 78.97 10.755 1 20.14 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 83.282 80.014 11.753 1 25.17 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 84.341 79.405 12.64 1 35.36 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 84.175 79.375 13.87 1 45.47 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 85.326 78.904 12.146 1 32.59 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 82.062 82.015 6.346 1 15.52 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 79.908 83.598 5.345 1 14.74 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 78.365 82.701 7.595 1 15.73 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 80.562 81.176 8.469 1 16.06 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 80.248 82.34 6.945 1 17.37 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #