data_5UTB # _model_server_result.job_id aB8zJs6C3ycnlrnHgX-2AQ _model_server_result.datetime_utc '2024-11-13 04:49:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5utb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5UTB # _exptl.entry_id 5UTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.47 _cell.angle_gamma 90 _cell.entry_id 5UTB _cell.length_a 34.437 _cell.length_b 30.778 _cell.length_c 64.043 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 G O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5UTB _atom_sites.fract_transf_matrix[1][1] 0.029039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 6920 SO4 SO4 . E 3 SO4 A 1 204 6920 SO4 SO4 . F 4 GOL A 1 205 3968 GOL GOL . G 5 HOH A 1 301 98 HOH HOH . G 5 HOH A 2 302 71 HOH HOH . G 5 HOH A 3 303 29 HOH HOH . G 5 HOH A 4 304 99 HOH HOH . G 5 HOH A 5 305 102 HOH HOH . G 5 HOH A 6 306 83 HOH HOH . G 5 HOH A 7 307 4 HOH HOH . G 5 HOH A 8 308 79 HOH HOH . G 5 HOH A 9 309 17 HOH HOH . G 5 HOH A 10 310 7 HOH HOH . G 5 HOH A 11 311 20 HOH HOH . G 5 HOH A 12 312 21 HOH HOH . G 5 HOH A 13 313 51 HOH HOH . G 5 HOH A 14 314 16 HOH HOH . G 5 HOH A 15 315 61 HOH HOH . G 5 HOH A 16 316 45 HOH HOH . G 5 HOH A 17 317 78 HOH HOH . G 5 HOH A 18 318 54 HOH HOH . G 5 HOH A 19 319 72 HOH HOH . G 5 HOH A 20 320 82 HOH HOH . G 5 HOH A 21 321 14 HOH HOH . G 5 HOH A 22 322 104 HOH HOH . G 5 HOH A 23 323 40 HOH HOH . G 5 HOH A 24 324 70 HOH HOH . G 5 HOH A 25 325 3 HOH HOH . G 5 HOH A 26 326 25 HOH HOH . G 5 HOH A 27 327 76 HOH HOH . G 5 HOH A 28 328 42 HOH HOH . G 5 HOH A 29 329 5 HOH HOH . G 5 HOH A 30 330 12 HOH HOH . G 5 HOH A 31 331 30 HOH HOH . G 5 HOH A 32 332 57 HOH HOH . G 5 HOH A 33 333 9 HOH HOH . G 5 HOH A 34 334 8 HOH HOH . G 5 HOH A 35 335 100 HOH HOH . G 5 HOH A 36 336 75 HOH HOH . G 5 HOH A 37 337 11 HOH HOH . G 5 HOH A 38 338 2 HOH HOH . G 5 HOH A 39 339 97 HOH HOH . G 5 HOH A 40 340 44 HOH HOH . G 5 HOH A 41 341 87 HOH HOH . G 5 HOH A 42 342 15 HOH HOH . G 5 HOH A 43 343 36 HOH HOH . G 5 HOH A 44 344 31 HOH HOH . G 5 HOH A 45 345 91 HOH HOH . G 5 HOH A 46 346 85 HOH HOH . G 5 HOH A 47 347 1 HOH HOH . G 5 HOH A 48 348 52 HOH HOH . G 5 HOH A 49 349 18 HOH HOH . G 5 HOH A 50 350 41 HOH HOH . G 5 HOH A 51 351 66 HOH HOH . G 5 HOH A 52 352 65 HOH HOH . G 5 HOH A 53 353 33 HOH HOH . G 5 HOH A 54 354 37 HOH HOH . G 5 HOH A 55 355 13 HOH HOH . G 5 HOH A 56 356 27 HOH HOH . G 5 HOH A 57 357 62 HOH HOH . G 5 HOH A 58 358 68 HOH HOH . G 5 HOH A 59 359 58 HOH HOH . G 5 HOH A 60 360 84 HOH HOH . G 5 HOH A 61 361 23 HOH HOH . G 5 HOH A 62 362 26 HOH HOH . G 5 HOH A 63 363 94 HOH HOH . G 5 HOH A 64 364 74 HOH HOH . G 5 HOH A 65 365 92 HOH HOH . G 5 HOH A 66 366 10 HOH HOH . G 5 HOH A 67 367 39 HOH HOH . G 5 HOH A 68 368 43 HOH HOH . G 5 HOH A 69 369 38 HOH HOH . G 5 HOH A 70 370 81 HOH HOH . G 5 HOH A 71 371 86 HOH HOH . G 5 HOH A 72 372 80 HOH HOH . G 5 HOH A 73 373 49 HOH HOH . G 5 HOH A 74 374 50 HOH HOH . G 5 HOH A 75 375 24 HOH HOH . G 5 HOH A 76 376 32 HOH HOH . G 5 HOH A 77 377 34 HOH HOH . G 5 HOH A 78 378 35 HOH HOH . G 5 HOH A 79 379 22 HOH HOH . G 5 HOH A 80 380 111 HOH HOH . G 5 HOH A 81 381 89 HOH HOH . G 5 HOH A 82 382 60 HOH HOH . G 5 HOH A 83 383 73 HOH HOH . G 5 HOH A 84 384 56 HOH HOH . G 5 HOH A 85 385 48 HOH HOH . G 5 HOH A 86 386 46 HOH HOH . G 5 HOH A 87 387 28 HOH HOH . G 5 HOH A 88 388 107 HOH HOH . G 5 HOH A 89 389 93 HOH HOH . G 5 HOH A 90 390 109 HOH HOH . G 5 HOH A 91 391 47 HOH HOH . G 5 HOH A 92 392 69 HOH HOH . G 5 HOH A 93 393 77 HOH HOH . G 5 HOH A 94 394 67 HOH HOH . G 5 HOH A 95 395 106 HOH HOH . G 5 HOH A 96 396 110 HOH HOH . G 5 HOH A 97 397 88 HOH HOH . G 5 HOH A 98 398 90 HOH HOH . G 5 HOH A 99 399 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -0.769 -4.167 -16.825 1 14.47 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -4.228 -0.953 -15.74 1 15.51 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -0.92 2.054 -13.856 1 15.89 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 2.588 -0.918 -15.465 1 14.17 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -1.978 -3.569 -16.653 1 14.72 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -3.248 -4.152 -16.937 1 15.59 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -4.215 -3.234 -16.64 1 15.95 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -3.564 -2.093 -16.142 1 14.34 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -5.729 -3.32 -16.744 1 15.68 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -3.486 -5.558 -17.443 1 16.89 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -3.931 -6.509 -16.341 1 17.52 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -2.98 -6.586 -15.164 1 17.89 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -1.829 -7.014 -15.373 1 17.65 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -3.343 -6.163 -14.013 1 20.07 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -3.609 0.135 -15.12 1 15.79 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.348 1.26 -14.6 1 18.4 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -3.455 2.125 -14.049 1 18.87 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -2.135 1.483 -14.254 1 17.73 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -5.828 1.389 -14.695 1 18.32 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -3.609 3.496 -13.445 1 22.98 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -4.586 4.345 -13.739 1 25.87 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 0.359 1.554 -14.204 1 15.36 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 1.547 2.26 -14.126 1 16.81 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 2.58 1.435 -14.571 1 16.23 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 1.964 0.184 -14.921 1 14.5 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 1.683 3.654 -13.562 1 18.02 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 4.05 1.711 -14.701 1 16.19 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 4.595 2.866 -14.388 1 16.94 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 1.901 -2.036 -15.979 1 15.24 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 2.618 -3.203 -16.51 1 16.81 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 1.709 -4.07 -16.902 1 16.82 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 0.408 -3.495 -16.544 1 15.5 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 4.126 -3.376 -16.634 1 15.81 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 2.011 -5.42 -17.555 1 17.56 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 2.055 -5.122 -19.052 1 19.47 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 2.5 -6.268 -19.943 1 21.42 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 3.69 -6.656 -20.018 1 23.41 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 1.683 -6.795 -20.679 1 21.78 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -2.19 -2.297 -16.138 1 15.06 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -2.323 0.303 -14.892 1 15.61 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 0.619 0.331 -14.776 1 15.12 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 0.547 -2.258 -15.993 1 14.9 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -0.815 -1.038 -15.452 1 16.45 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 43 #