data_5UTC # _model_server_result.job_id xk-h8bLlV0wGGzU4T9J_iA _model_server_result.datetime_utc '2024-11-13 04:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5utc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5UTC # _exptl.entry_id 5UTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.58 _cell.angle_gamma 90 _cell.entry_id 5UTC _cell.length_a 34.454 _cell.length_b 30.565 _cell.length_c 63.811 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.234 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5UTC _atom_sites.fract_transf_matrix[1][1] 0.029024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008094 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 GOL A 1 203 3968 GOL GOL . E 4 GOL A 1 204 3968 GOL GOL . F 3 SO4 A 1 205 6920 SO4 SO4 . G 3 SO4 A 1 206 6920 SO4 SO4 . H 5 HOH A 1 301 21 HOH HOH . H 5 HOH A 2 302 51 HOH HOH . H 5 HOH A 3 303 103 HOH HOH . H 5 HOH A 4 304 106 HOH HOH . H 5 HOH A 5 305 63 HOH HOH . H 5 HOH A 6 306 41 HOH HOH . H 5 HOH A 7 307 56 HOH HOH . H 5 HOH A 8 308 107 HOH HOH . H 5 HOH A 9 309 88 HOH HOH . H 5 HOH A 10 310 30 HOH HOH . H 5 HOH A 11 311 45 HOH HOH . H 5 HOH A 12 312 43 HOH HOH . H 5 HOH A 13 313 35 HOH HOH . H 5 HOH A 14 314 36 HOH HOH . H 5 HOH A 15 315 54 HOH HOH . H 5 HOH A 16 316 47 HOH HOH . H 5 HOH A 17 317 5 HOH HOH . H 5 HOH A 18 318 68 HOH HOH . H 5 HOH A 19 319 66 HOH HOH . H 5 HOH A 20 320 7 HOH HOH . H 5 HOH A 21 321 12 HOH HOH . H 5 HOH A 22 322 55 HOH HOH . H 5 HOH A 23 323 59 HOH HOH . H 5 HOH A 24 324 8 HOH HOH . H 5 HOH A 25 325 52 HOH HOH . H 5 HOH A 26 326 34 HOH HOH . H 5 HOH A 27 327 25 HOH HOH . H 5 HOH A 28 328 31 HOH HOH . H 5 HOH A 29 329 101 HOH HOH . H 5 HOH A 30 330 1 HOH HOH . H 5 HOH A 31 331 6 HOH HOH . H 5 HOH A 32 332 16 HOH HOH . H 5 HOH A 33 333 11 HOH HOH . H 5 HOH A 34 334 37 HOH HOH . H 5 HOH A 35 335 53 HOH HOH . H 5 HOH A 36 336 27 HOH HOH . H 5 HOH A 37 337 76 HOH HOH . H 5 HOH A 38 338 10 HOH HOH . H 5 HOH A 39 339 19 HOH HOH . H 5 HOH A 40 340 14 HOH HOH . H 5 HOH A 41 341 3 HOH HOH . H 5 HOH A 42 342 73 HOH HOH . H 5 HOH A 43 343 24 HOH HOH . H 5 HOH A 44 344 69 HOH HOH . H 5 HOH A 45 345 23 HOH HOH . H 5 HOH A 46 346 32 HOH HOH . H 5 HOH A 47 347 95 HOH HOH . H 5 HOH A 48 348 99 HOH HOH . H 5 HOH A 49 349 58 HOH HOH . H 5 HOH A 50 350 38 HOH HOH . H 5 HOH A 51 351 17 HOH HOH . H 5 HOH A 52 352 13 HOH HOH . H 5 HOH A 53 353 105 HOH HOH . H 5 HOH A 54 354 22 HOH HOH . H 5 HOH A 55 355 74 HOH HOH . H 5 HOH A 56 356 40 HOH HOH . H 5 HOH A 57 357 72 HOH HOH . H 5 HOH A 58 358 4 HOH HOH . H 5 HOH A 59 359 2 HOH HOH . H 5 HOH A 60 360 46 HOH HOH . H 5 HOH A 61 361 18 HOH HOH . H 5 HOH A 62 362 104 HOH HOH . H 5 HOH A 63 363 42 HOH HOH . H 5 HOH A 64 364 20 HOH HOH . H 5 HOH A 65 365 9 HOH HOH . H 5 HOH A 66 366 64 HOH HOH . H 5 HOH A 67 367 48 HOH HOH . H 5 HOH A 68 368 79 HOH HOH . H 5 HOH A 69 369 44 HOH HOH . H 5 HOH A 70 370 39 HOH HOH . H 5 HOH A 71 371 28 HOH HOH . H 5 HOH A 72 372 89 HOH HOH . H 5 HOH A 73 373 29 HOH HOH . H 5 HOH A 74 374 75 HOH HOH . H 5 HOH A 75 375 61 HOH HOH . H 5 HOH A 76 376 87 HOH HOH . H 5 HOH A 77 377 81 HOH HOH . H 5 HOH A 78 378 91 HOH HOH . H 5 HOH A 79 379 15 HOH HOH . H 5 HOH A 80 380 96 HOH HOH . H 5 HOH A 81 381 83 HOH HOH . H 5 HOH A 82 382 93 HOH HOH . H 5 HOH A 83 383 84 HOH HOH . H 5 HOH A 84 384 92 HOH HOH . H 5 HOH A 85 385 100 HOH HOH . H 5 HOH A 86 386 98 HOH HOH . H 5 HOH A 87 387 82 HOH HOH . H 5 HOH A 88 388 67 HOH HOH . H 5 HOH A 89 389 94 HOH HOH . H 5 HOH A 90 390 90 HOH HOH . H 5 HOH A 91 391 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 0.926 5.345 -16.782 1 20.15 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 4.374 2.151 -15.62 1 17.86 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 0.92 -0.853 -13.937 1 20.55 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -2.494 2.239 -15.478 1 17.61 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 2.136 4.732 -16.563 1 19.29 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 3.4 5.288 -16.847 1 19.66 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 4.363 4.399 -16.532 1 19.31 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 3.697 3.255 -16.045 1 18.96 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 5.854 4.554 -16.67 1 20.48 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 3.678 6.646 -17.381 1 23.62 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 4.135 7.558 -16.221 1 25.57 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 3.179 7.66 -15.029 1 28 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 2.052 8.209 -15.173 1 26.63 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 3.518 7.263 -13.888 1 29.34 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 3.701 1.042 -15.079 1 19.01 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 4.396 -0.119 -14.636 1 22 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 3.477 -0.979 -14.151 1 23.42 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 2.168 -0.31 -14.312 1 22.95 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 5.879 -0.365 -14.675 1 22.79 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 3.616 -2.391 -13.653 1 26.23 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 4.578 -3.254 -13.957 1 27.96 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -0.331 -0.308 -14.236 1 19.92 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -1.546 -0.986 -14.187 1 20.61 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -2.533 -0.11 -14.645 1 18.78 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -1.871 1.12 -14.942 1 17.5 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -1.7 -2.42 -13.69 1 24.58 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -3.995 -0.272 -14.817 1 19.02 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -4.644 -1.411 -14.564 1 20.55 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -1.78 3.298 -15.972 1 17.69 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -2.466 4.449 -16.517 1 18.39 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -1.525 5.309 -16.833 1 22.5 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -0.261 4.677 -16.52 1 19.75 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -3.961 4.643 -16.628 1 18.58 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -1.767 6.641 -17.491 1 24.5 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -1.688 6.36 -18.987 1 29.12 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -2.503 7.349 -19.744 1 38.74 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -3.763 7.316 -19.678 1 46.58 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -1.909 8.188 -20.461 1 40.01 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 2.341 3.491 -15.99 1 18.67 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 2.396 0.902 -14.836 1 19.88 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -0.553 0.951 -14.746 1 17.8 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -0.443 3.491 -15.881 1 19.02 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 0.91 2.266 -15.342 1 18.27 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #