data_5UTD
#
_model_server_result.job_id            e-efPTbJi7JxAjeabCu3rw 
_model_server_result.datetime_utc      '2024-11-27 18:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5utd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5UTD 
#
_exptl.entry_id    5UTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.76 
_cell.angle_gamma         90 
_cell.entry_id            5UTD 
_cell.length_a            34.84 
_cell.length_b            29.26 
_cell.length_c            64.06 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 D N NO2 . A NO2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc3 B FE HEM . A HEM 201 1_555 D O1 NO2 . A NO2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     5UTD 
_atom_sites.fract_transf_matrix[1][1]    0.028703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0081 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034176 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 155 HEM HEM . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 4 NO2 A 1 203 1 NO2 NO2 . 
E 4 NO2 A 1 204 1 NO2 NO2 . 
F 5 HOH A 1 301 62 HOH HOH . 
F 5 HOH A 2 302 43 HOH HOH . 
F 5 HOH A 3 303 63 HOH HOH . 
F 5 HOH A 4 304 73 HOH HOH . 
F 5 HOH A 5 305 76 HOH HOH . 
F 5 HOH A 6 306 98 HOH HOH . 
F 5 HOH A 7 307 70 HOH HOH . 
F 5 HOH A 8 308 42 HOH HOH . 
F 5 HOH A 9 309 49 HOH HOH . 
F 5 HOH A 10 310 101 HOH HOH . 
F 5 HOH A 11 311 31 HOH HOH . 
F 5 HOH A 12 312 36 HOH HOH . 
F 5 HOH A 13 313 99 HOH HOH . 
F 5 HOH A 14 314 79 HOH HOH . 
F 5 HOH A 15 315 50 HOH HOH . 
F 5 HOH A 16 316 71 HOH HOH . 
F 5 HOH A 17 317 75 HOH HOH . 
F 5 HOH A 18 318 13 HOH HOH . 
F 5 HOH A 19 319 48 HOH HOH . 
F 5 HOH A 20 320 8 HOH HOH . 
F 5 HOH A 21 321 6 HOH HOH . 
F 5 HOH A 22 322 97 HOH HOH . 
F 5 HOH A 23 323 16 HOH HOH . 
F 5 HOH A 24 324 82 HOH HOH . 
F 5 HOH A 25 325 30 HOH HOH . 
F 5 HOH A 26 326 94 HOH HOH . 
F 5 HOH A 27 327 19 HOH HOH . 
F 5 HOH A 28 328 32 HOH HOH . 
F 5 HOH A 29 329 53 HOH HOH . 
F 5 HOH A 30 330 40 HOH HOH . 
F 5 HOH A 31 331 72 HOH HOH . 
F 5 HOH A 32 332 14 HOH HOH . 
F 5 HOH A 33 333 9 HOH HOH . 
F 5 HOH A 34 334 38 HOH HOH . 
F 5 HOH A 35 335 28 HOH HOH . 
F 5 HOH A 36 336 15 HOH HOH . 
F 5 HOH A 37 337 4 HOH HOH . 
F 5 HOH A 38 338 27 HOH HOH . 
F 5 HOH A 39 339 34 HOH HOH . 
F 5 HOH A 40 340 20 HOH HOH . 
F 5 HOH A 41 341 54 HOH HOH . 
F 5 HOH A 42 342 23 HOH HOH . 
F 5 HOH A 43 343 25 HOH HOH . 
F 5 HOH A 44 344 39 HOH HOH . 
F 5 HOH A 45 345 93 HOH HOH . 
F 5 HOH A 46 346 45 HOH HOH . 
F 5 HOH A 47 347 47 HOH HOH . 
F 5 HOH A 48 348 41 HOH HOH . 
F 5 HOH A 49 349 12 HOH HOH . 
F 5 HOH A 50 350 58 HOH HOH . 
F 5 HOH A 51 351 87 HOH HOH . 
F 5 HOH A 52 352 3 HOH HOH . 
F 5 HOH A 53 353 11 HOH HOH . 
F 5 HOH A 54 354 26 HOH HOH . 
F 5 HOH A 55 355 44 HOH HOH . 
F 5 HOH A 56 356 37 HOH HOH . 
F 5 HOH A 57 357 91 HOH HOH . 
F 5 HOH A 58 358 21 HOH HOH . 
F 5 HOH A 59 359 89 HOH HOH . 
F 5 HOH A 60 360 105 HOH HOH . 
F 5 HOH A 61 361 84 HOH HOH . 
F 5 HOH A 62 362 17 HOH HOH . 
F 5 HOH A 63 363 60 HOH HOH . 
F 5 HOH A 64 364 106 HOH HOH . 
F 5 HOH A 65 365 18 HOH HOH . 
F 5 HOH A 66 366 90 HOH HOH . 
F 5 HOH A 67 367 29 HOH HOH . 
F 5 HOH A 68 368 92 HOH HOH . 
F 5 HOH A 69 369 10 HOH HOH . 
F 5 HOH A 70 370 51 HOH HOH . 
F 5 HOH A 71 371 77 HOH HOH . 
F 5 HOH A 72 372 67 HOH HOH . 
F 5 HOH A 73 373 78 HOH HOH . 
F 5 HOH A 74 374 80 HOH HOH . 
F 5 HOH A 75 375 35 HOH HOH . 
F 5 HOH A 76 376 110 HOH HOH . 
F 5 HOH A 77 377 22 HOH HOH . 
F 5 HOH A 78 378 46 HOH HOH . 
F 5 HOH A 79 379 83 HOH HOH . 
F 5 HOH A 80 380 52 HOH HOH . 
F 5 HOH A 81 381 57 HOH HOH . 
F 5 HOH A 82 382 55 HOH HOH . 
F 5 HOH A 83 383 1 HOH HOH . 
F 5 HOH A 84 384 64 HOH HOH . 
F 5 HOH A 85 385 61 HOH HOH . 
F 5 HOH A 86 386 24 HOH HOH . 
F 5 HOH A 87 387 111 HOH HOH . 
F 5 HOH A 88 388 103 HOH HOH . 
F 5 HOH A 89 389 107 HOH HOH . 
F 5 HOH A 90 390 96 HOH HOH . 
F 5 HOH A 91 391 100 HOH HOH . 
F 5 HOH A 92 392 102 HOH HOH . 
F 5 HOH A 93 393 109 HOH HOH . 
F 5 HOH A 94 394 104 HOH HOH . 
F 5 HOH A 95 395 108 HOH HOH . 
F 5 HOH A 96 396 95 HOH HOH . 
F 5 HOH A 97 397 65 HOH HOH . 
F 5 HOH A 98 398 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 0.813 16.944 -16.863 1 10.63 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . B 2 4.299 13.761 -15.638 1 11.64 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . B 2 0.903 10.723 -14.044 1 12.42 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . B 2 -2.597 13.814 -15.373 1 11.53 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . B 2 2.047 16.339 -16.611 1 11.12 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . B 2 3.311 16.979 -16.862 1 11.3 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . B 2 4.306 16.105 -16.545 1 11.73 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . B 2 3.66 14.916 -16.057 1 12.01 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . B 2 5.819 16.389 -16.638 1 11.59 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . B 2 3.461 18.384 -17.397 1 12.87 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . B 2 3.924 19.23 -16.212 1 13.47 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . B 2 2.955 19.239 -15.031 1 12.93 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . B 2 1.81 19.723 -15.184 1 12.95 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . B 2 3.383 18.896 -13.906 1 15.27 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . B 2 3.664 12.637 -15.11 1 14.18 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . B 2 4.381 11.491 -14.638 1 15.63 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . B 2 3.44 10.638 -14.156 1 16.77 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . B 2 2.134 11.283 -14.378 1 14.96 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . B 2 5.902 11.26 -14.62 1 17.42 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . B 2 3.631 9.288 -13.58 1 20.66 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . B 2 4.554 8.404 -13.98 1 24.42 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . B 2 -0.35 11.237 -14.301 1 12.32 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . B 2 -1.58 10.564 -14.179 1 12.71 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . B 2 -2.591 11.471 -14.585 1 12.63 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . B 2 -1.947 12.706 -14.939 1 11.59 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . B 2 -1.741 9.142 -13.705 1 13.17 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . B 2 -4.081 11.306 -14.71 1 12.75 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . B 2 -4.759 10.174 -14.541 1 13.4 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . B 2 -1.918 14.965 -15.877 1 11.47 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . B 2 -2.635 16.111 -16.457 1 11.02 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . B 2 -1.663 16.972 -16.863 1 10.61 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . B 2 -0.397 16.311 -16.54 1 10.46 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . B 2 -4.122 16.421 -16.543 1 12.17 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . B 2 -1.76 18.284 -17.57 1 9.84 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . B 2 -1.829 18 -19.1 1 11.58 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . B 2 -2.278 19.23 -19.894 1 12.32 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . B 2 -3.462 19.658 -19.909 1 13.31 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . B 2 -1.458 19.837 -20.641 1 13.45 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . B 2 2.286 15.079 -16.125 1 10.96 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . B 2 2.345 12.482 -14.899 1 12.95 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . B 2 -0.599 12.519 -14.779 1 11.74 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . B 2 -0.545 15.086 -15.98 1 10.52 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . B 2 0.855 13.822 -15.439 1 12.32 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#