data_5UTJ # _model_server_result.job_id EWmGxO389vpZsW2PZvI8WA _model_server_result.datetime_utc '2024-11-24 20:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5utj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5UTJ # _exptl.entry_id 5UTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.15 _cell.angle_gamma 90 _cell.entry_id 5UTJ _cell.length_a 89.142 _cell.length_b 64.759 _cell.length_c 70.451 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -7.74259 0 140.689111 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 309 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 311 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 314 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A ND1 HIS 340 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 98 n n S C1 DMS sing 99 n n S C2 DMS sing 100 n n C1 H11 DMS sing 101 n n C1 H12 DMS sing 102 n n C1 H13 DMS sing 103 n n C2 H21 DMS sing 104 n n C2 H22 DMS sing 105 n n C2 H23 DMS sing 106 n n # _atom_sites.entry_id 5UTJ _atom_sites.fract_transf_matrix[1][1] 0.011218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 PEG A 1 402 2 PEG PEG . D 3 PEG A 1 403 3 PEG PEG . E 4 DMS A 1 404 1 DMS DMS . F 5 AZA A 1 405 1 AZA XXX . G 6 HOH A 1 501 194 HOH HOH . G 6 HOH A 2 502 183 HOH HOH . G 6 HOH A 3 503 32 HOH HOH . G 6 HOH A 4 504 193 HOH HOH . G 6 HOH A 5 505 167 HOH HOH . G 6 HOH A 6 506 174 HOH HOH . G 6 HOH A 7 507 73 HOH HOH . G 6 HOH A 8 508 122 HOH HOH . G 6 HOH A 9 509 10 HOH HOH . G 6 HOH A 10 510 143 HOH HOH . G 6 HOH A 11 511 123 HOH HOH . G 6 HOH A 12 512 163 HOH HOH . G 6 HOH A 13 513 25 HOH HOH . G 6 HOH A 14 514 101 HOH HOH . G 6 HOH A 15 515 50 HOH HOH . G 6 HOH A 16 516 49 HOH HOH . G 6 HOH A 17 517 135 HOH HOH . G 6 HOH A 18 518 133 HOH HOH . G 6 HOH A 19 519 102 HOH HOH . G 6 HOH A 20 520 126 HOH HOH . G 6 HOH A 21 521 41 HOH HOH . G 6 HOH A 22 522 191 HOH HOH . G 6 HOH A 23 523 43 HOH HOH . G 6 HOH A 24 524 169 HOH HOH . G 6 HOH A 25 525 33 HOH HOH . G 6 HOH A 26 526 173 HOH HOH . G 6 HOH A 27 527 61 HOH HOH . G 6 HOH A 28 528 12 HOH HOH . G 6 HOH A 29 529 158 HOH HOH . G 6 HOH A 30 530 39 HOH HOH . G 6 HOH A 31 531 40 HOH HOH . G 6 HOH A 32 532 59 HOH HOH . G 6 HOH A 33 533 84 HOH HOH . G 6 HOH A 34 534 81 HOH HOH . G 6 HOH A 35 535 89 HOH HOH . G 6 HOH A 36 536 164 HOH HOH . G 6 HOH A 37 537 4 HOH HOH . G 6 HOH A 38 538 152 HOH HOH . G 6 HOH A 39 539 19 HOH HOH . G 6 HOH A 40 540 71 HOH HOH . G 6 HOH A 41 541 128 HOH HOH . G 6 HOH A 42 542 66 HOH HOH . G 6 HOH A 43 543 14 HOH HOH . G 6 HOH A 44 544 192 HOH HOH . G 6 HOH A 45 545 80 HOH HOH . G 6 HOH A 46 546 106 HOH HOH . G 6 HOH A 47 547 8 HOH HOH . G 6 HOH A 48 548 67 HOH HOH . G 6 HOH A 49 549 125 HOH HOH . G 6 HOH A 50 550 146 HOH HOH . G 6 HOH A 51 551 29 HOH HOH . G 6 HOH A 52 552 110 HOH HOH . G 6 HOH A 53 553 79 HOH HOH . G 6 HOH A 54 554 9 HOH HOH . G 6 HOH A 55 555 87 HOH HOH . G 6 HOH A 56 556 130 HOH HOH . G 6 HOH A 57 557 144 HOH HOH . G 6 HOH A 58 558 142 HOH HOH . G 6 HOH A 59 559 74 HOH HOH . G 6 HOH A 60 560 91 HOH HOH . G 6 HOH A 61 561 17 HOH HOH . G 6 HOH A 62 562 184 HOH HOH . G 6 HOH A 63 563 24 HOH HOH . G 6 HOH A 64 564 124 HOH HOH . G 6 HOH A 65 565 121 HOH HOH . G 6 HOH A 66 566 65 HOH HOH . G 6 HOH A 67 567 30 HOH HOH . G 6 HOH A 68 568 6 HOH HOH . G 6 HOH A 69 569 99 HOH HOH . G 6 HOH A 70 570 13 HOH HOH . G 6 HOH A 71 571 182 HOH HOH . G 6 HOH A 72 572 23 HOH HOH . G 6 HOH A 73 573 36 HOH HOH . G 6 HOH A 74 574 34 HOH HOH . G 6 HOH A 75 575 55 HOH HOH . G 6 HOH A 76 576 54 HOH HOH . G 6 HOH A 77 577 145 HOH HOH . G 6 HOH A 78 578 76 HOH HOH . G 6 HOH A 79 579 51 HOH HOH . G 6 HOH A 80 580 42 HOH HOH . G 6 HOH A 81 581 195 HOH HOH . G 6 HOH A 82 582 52 HOH HOH . G 6 HOH A 83 583 28 HOH HOH . G 6 HOH A 84 584 16 HOH HOH . G 6 HOH A 85 585 178 HOH HOH . G 6 HOH A 86 586 45 HOH HOH . G 6 HOH A 87 587 83 HOH HOH . G 6 HOH A 88 588 3 HOH HOH . G 6 HOH A 89 589 18 HOH HOH . G 6 HOH A 90 590 62 HOH HOH . G 6 HOH A 91 591 11 HOH HOH . G 6 HOH A 92 592 2 HOH HOH . G 6 HOH A 93 593 132 HOH HOH . G 6 HOH A 94 594 177 HOH HOH . G 6 HOH A 95 595 134 HOH HOH . G 6 HOH A 96 596 21 HOH HOH . G 6 HOH A 97 597 148 HOH HOH . G 6 HOH A 98 598 72 HOH HOH . G 6 HOH A 99 599 69 HOH HOH . G 6 HOH A 100 600 75 HOH HOH . G 6 HOH A 101 601 48 HOH HOH . G 6 HOH A 102 602 47 HOH HOH . G 6 HOH A 103 603 31 HOH HOH . G 6 HOH A 104 604 7 HOH HOH . G 6 HOH A 105 605 170 HOH HOH . G 6 HOH A 106 606 147 HOH HOH . G 6 HOH A 107 607 165 HOH HOH . G 6 HOH A 108 608 57 HOH HOH . G 6 HOH A 109 609 168 HOH HOH . G 6 HOH A 110 610 138 HOH HOH . G 6 HOH A 111 611 127 HOH HOH . G 6 HOH A 112 612 154 HOH HOH . G 6 HOH A 113 613 56 HOH HOH . G 6 HOH A 114 614 22 HOH HOH . G 6 HOH A 115 615 197 HOH HOH . G 6 HOH A 116 616 159 HOH HOH . G 6 HOH A 117 617 115 HOH HOH . G 6 HOH A 118 618 189 HOH HOH . G 6 HOH A 119 619 82 HOH HOH . G 6 HOH A 120 620 153 HOH HOH . G 6 HOH A 121 621 27 HOH HOH . G 6 HOH A 122 622 46 HOH HOH . G 6 HOH A 123 623 77 HOH HOH . G 6 HOH A 124 624 58 HOH HOH . G 6 HOH A 125 625 88 HOH HOH . G 6 HOH A 126 626 95 HOH HOH . G 6 HOH A 127 627 35 HOH HOH . G 6 HOH A 128 628 131 HOH HOH . G 6 HOH A 129 629 129 HOH HOH . G 6 HOH A 130 630 161 HOH HOH . G 6 HOH A 131 631 114 HOH HOH . G 6 HOH A 132 632 26 HOH HOH . G 6 HOH A 133 633 108 HOH HOH . G 6 HOH A 134 634 188 HOH HOH . G 6 HOH A 135 635 172 HOH HOH . G 6 HOH A 136 636 162 HOH HOH . G 6 HOH A 137 637 86 HOH HOH . G 6 HOH A 138 638 20 HOH HOH . G 6 HOH A 139 639 44 HOH HOH . G 6 HOH A 140 640 37 HOH HOH . G 6 HOH A 141 641 136 HOH HOH . G 6 HOH A 142 642 179 HOH HOH . G 6 HOH A 143 643 105 HOH HOH . G 6 HOH A 144 644 166 HOH HOH . G 6 HOH A 145 645 60 HOH HOH . G 6 HOH A 146 646 85 HOH HOH . G 6 HOH A 147 647 137 HOH HOH . G 6 HOH A 148 648 1 HOH HOH . G 6 HOH A 149 649 92 HOH HOH . G 6 HOH A 150 650 140 HOH HOH . G 6 HOH A 151 651 171 HOH HOH . G 6 HOH A 152 652 116 HOH HOH . G 6 HOH A 153 653 196 HOH HOH . G 6 HOH A 154 654 63 HOH HOH . G 6 HOH A 155 655 175 HOH HOH . G 6 HOH A 156 656 78 HOH HOH . G 6 HOH A 157 657 5 HOH HOH . G 6 HOH A 158 658 141 HOH HOH . G 6 HOH A 159 659 139 HOH HOH . G 6 HOH A 160 660 117 HOH HOH . G 6 HOH A 161 661 120 HOH HOH . G 6 HOH A 162 662 160 HOH HOH . G 6 HOH A 163 663 93 HOH HOH . G 6 HOH A 164 664 118 HOH HOH . G 6 HOH A 165 665 100 HOH HOH . G 6 HOH A 166 666 98 HOH HOH . G 6 HOH A 167 667 90 HOH HOH . G 6 HOH A 168 668 180 HOH HOH . G 6 HOH A 169 669 38 HOH HOH . G 6 HOH A 170 670 185 HOH HOH . G 6 HOH A 171 671 94 HOH HOH . G 6 HOH A 172 672 68 HOH HOH . G 6 HOH A 173 673 96 HOH HOH . G 6 HOH A 174 674 53 HOH HOH . G 6 HOH A 175 675 187 HOH HOH . G 6 HOH A 176 676 190 HOH HOH . G 6 HOH A 177 677 109 HOH HOH . G 6 HOH A 178 678 186 HOH HOH . G 6 HOH A 179 679 70 HOH HOH . G 6 HOH A 180 680 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -4.252 -0.749 111.211 0.71 22.6 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 4 -3.886 -1.501 109.973 0.71 21.41 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 4 -4.332 1.01 110.783 0.71 21.23 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 4 -5.991 -1.109 111.575 0.71 21.38 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #