data_5UUV # _model_server_result.job_id jsp-bU_3nVqjttKLxwyT_A _model_server_result.datetime_utc '2024-11-29 04:57:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uuv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 5UUV # _exptl.entry_id 5UUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UUV _cell.length_a 85.281 _cell.length_b 89.164 _cell.length_c 164.297 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 200 A GLY 303 1_555 G K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc2 A O GLY 202 A GLY 305 1_555 G K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc3 A O CYS 205 A CYS 308 1_555 G K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc4 A O GLU 367 A GLU 470 1_555 H K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc5 A O SER 368 A SER 471 1_555 H K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc6 A O HIS 369 A HIS 472 1_555 H K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.354 ? metalc ? metalc7 G K K . A K 503 1_555 D O GLU 367 D GLU 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc8 G K K . A K 503 1_555 D O SER 368 D SER 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc9 H K K . A K 504 1_555 C O GLY 200 C GLY 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc10 H K K . A K 504 1_555 C O GLY 202 C GLY 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc11 H K K . A K 504 1_555 C O CYS 205 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc12 B O GLY 200 B GLY 303 1_555 K K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc13 B O GLY 202 B GLY 305 1_555 K K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc14 B O CYS 205 B CYS 308 1_555 K K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc15 B O GLU 367 B GLU 470 1_555 M K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc16 B O SER 368 B SER 471 1_555 M K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc17 B O HIS 369 B HIS 472 1_555 M K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.49 ? metalc ? metalc18 K K K . B K 503 1_555 C O GLU 367 C GLU 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc19 K K K . B K 503 1_555 C O SER 368 C SER 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc20 M K K . B K 505 1_555 D O GLY 200 D GLY 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc21 M K K . B K 505 1_555 D O GLY 202 D GLY 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc22 M K K . B K 505 1_555 D O CYS 205 D CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 184 n n C1 C2 GOL sing 185 n n C1 H11 GOL sing 186 n n C1 H12 GOL sing 187 n n O1 HO1 GOL sing 188 n n C2 O2 GOL sing 189 n n C2 C3 GOL sing 190 n n C2 H2 GOL sing 191 n n O2 HO2 GOL sing 192 n n C3 O3 GOL sing 193 n n C3 H31 GOL sing 194 n n C3 H32 GOL sing 195 n n O3 HO3 GOL sing 196 n n # _atom_sites.entry_id 5UUV _atom_sites.fract_transf_matrix[1][1] 0.011726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 501 500 IMP IMP . F 3 8L1 A 1 502 501 8L1 P18 . G 4 K A 1 503 502 K K . H 4 K A 1 504 502 K K . I 2 IMP B 1 501 500 IMP IMP . J 3 8L1 B 1 502 501 8L1 P18 . K 4 K B 1 503 502 K K . L 5 GOL B 1 504 503 GOL GOL . M 4 K B 1 505 502 K K . N 2 IMP C 1 501 500 IMP IMP . O 3 8L1 C 1 502 501 8L1 P18 . P 5 GOL C 1 503 503 GOL GOL . Q 2 IMP D 1 500 500 IMP IMP . R 3 8L1 D 1 501 501 8L1 P18 . S 6 HOH A 1 601 7 HOH HOH . S 6 HOH A 2 602 6 HOH HOH . S 6 HOH A 3 603 25 HOH HOH . S 6 HOH A 4 604 14 HOH HOH . S 6 HOH A 5 605 3 HOH HOH . S 6 HOH A 6 606 24 HOH HOH . S 6 HOH A 7 607 40 HOH HOH . T 6 HOH B 1 601 19 HOH HOH . T 6 HOH B 2 602 32 HOH HOH . T 6 HOH B 3 603 29 HOH HOH . T 6 HOH B 4 604 38 HOH HOH . T 6 HOH B 5 605 30 HOH HOH . T 6 HOH B 6 606 8 HOH HOH . T 6 HOH B 7 607 27 HOH HOH . T 6 HOH B 8 608 15 HOH HOH . T 6 HOH B 9 609 10 HOH HOH . T 6 HOH B 10 610 11 HOH HOH . T 6 HOH B 11 611 34 HOH HOH . T 6 HOH B 12 612 23 HOH HOH . U 6 HOH C 1 601 12 HOH HOH . U 6 HOH C 2 602 16 HOH HOH . U 6 HOH C 3 603 22 HOH HOH . U 6 HOH C 4 604 18 HOH HOH . U 6 HOH C 5 605 13 HOH HOH . U 6 HOH C 6 606 33 HOH HOH . U 6 HOH C 7 607 37 HOH HOH . U 6 HOH C 8 608 9 HOH HOH . U 6 HOH C 9 609 2 HOH HOH . U 6 HOH C 10 610 39 HOH HOH . U 6 HOH C 11 611 20 HOH HOH . U 6 HOH C 12 612 28 HOH HOH . V 6 HOH D 1 601 31 HOH HOH . V 6 HOH D 2 602 17 HOH HOH . V 6 HOH D 3 603 4 HOH HOH . V 6 HOH D 4 604 5 HOH HOH . V 6 HOH D 5 605 1 HOH HOH . V 6 HOH D 6 606 21 HOH HOH . V 6 HOH D 7 607 35 HOH HOH . V 6 HOH D 8 608 26 HOH HOH . V 6 HOH D 9 609 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 56.071 -9.19 83.646 1 68.78 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . L 5 57.333 -9.724 83.313 1 66.6 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . L 5 56.192 -8.35 84.912 1 71.19 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . L 5 55.627 -7.078 84.69 1 65.88 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . L 5 55.469 -9.045 86.061 1 75.01 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . L 5 55.21 -8.114 87.089 1 74.98 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 486 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #