data_5UUY # _model_server_result.job_id iaF79VSLHaWHFg7qFTpHxQ _model_server_result.datetime_utc '2024-11-27 20:08:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5UUY # _exptl.entry_id 5UUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UUY _cell.length_a 64.66 _cell.length_b 85.98 _cell.length_c 93.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -85.98 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -85.98 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 B MN MN . A MN 301 1_555 E O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc11 B MN MN . A MN 301 1_555 E O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 C CA CA . A CA 302 1_555 E O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc13 C CA CA . A CA 302 1_555 E O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UUY _atom_sites.fract_transf_matrix[1][1] 0.015466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 3 CA A 1 302 1 CA CA . D 4 XMM A 1 303 1 XMM XMM . E 5 HOH A 1 401 8 HOH HOH . E 5 HOH A 2 402 135 HOH HOH . E 5 HOH A 3 403 41 HOH HOH . E 5 HOH A 4 404 33 HOH HOH . E 5 HOH A 5 405 86 HOH HOH . E 5 HOH A 6 406 36 HOH HOH . E 5 HOH A 7 407 14 HOH HOH . E 5 HOH A 8 408 87 HOH HOH . E 5 HOH A 9 409 10 HOH HOH . E 5 HOH A 10 410 47 HOH HOH . E 5 HOH A 11 411 25 HOH HOH . E 5 HOH A 12 412 24 HOH HOH . E 5 HOH A 13 413 50 HOH HOH . E 5 HOH A 14 414 111 HOH HOH . E 5 HOH A 15 415 37 HOH HOH . E 5 HOH A 16 416 117 HOH HOH . E 5 HOH A 17 417 140 HOH HOH . E 5 HOH A 18 418 72 HOH HOH . E 5 HOH A 19 419 45 HOH HOH . E 5 HOH A 20 420 57 HOH HOH . E 5 HOH A 21 421 58 HOH HOH . E 5 HOH A 22 422 84 HOH HOH . E 5 HOH A 23 423 67 HOH HOH . E 5 HOH A 24 424 88 HOH HOH . E 5 HOH A 25 425 32 HOH HOH . E 5 HOH A 26 426 49 HOH HOH . E 5 HOH A 27 427 91 HOH HOH . E 5 HOH A 28 428 43 HOH HOH . E 5 HOH A 29 429 1 HOH HOH . E 5 HOH A 30 430 123 HOH HOH . E 5 HOH A 31 431 143 HOH HOH . E 5 HOH A 32 432 16 HOH HOH . E 5 HOH A 33 433 4 HOH HOH . E 5 HOH A 34 434 63 HOH HOH . E 5 HOH A 35 435 136 HOH HOH . E 5 HOH A 36 436 30 HOH HOH . E 5 HOH A 37 437 21 HOH HOH . E 5 HOH A 38 438 112 HOH HOH . E 5 HOH A 39 439 59 HOH HOH . E 5 HOH A 40 440 56 HOH HOH . E 5 HOH A 41 441 113 HOH HOH . E 5 HOH A 42 442 94 HOH HOH . E 5 HOH A 43 443 61 HOH HOH . E 5 HOH A 44 444 3 HOH HOH . E 5 HOH A 45 445 11 HOH HOH . E 5 HOH A 46 446 54 HOH HOH . E 5 HOH A 47 447 73 HOH HOH . E 5 HOH A 48 448 22 HOH HOH . E 5 HOH A 49 449 13 HOH HOH . E 5 HOH A 50 450 74 HOH HOH . E 5 HOH A 51 451 70 HOH HOH . E 5 HOH A 52 452 99 HOH HOH . E 5 HOH A 53 453 65 HOH HOH . E 5 HOH A 54 454 7 HOH HOH . E 5 HOH A 55 455 62 HOH HOH . E 5 HOH A 56 456 55 HOH HOH . E 5 HOH A 57 457 42 HOH HOH . E 5 HOH A 58 458 118 HOH HOH . E 5 HOH A 59 459 15 HOH HOH . E 5 HOH A 60 460 6 HOH HOH . E 5 HOH A 61 461 12 HOH HOH . E 5 HOH A 62 462 80 HOH HOH . E 5 HOH A 63 463 115 HOH HOH . E 5 HOH A 64 464 52 HOH HOH . E 5 HOH A 65 465 128 HOH HOH . E 5 HOH A 66 466 77 HOH HOH . E 5 HOH A 67 467 19 HOH HOH . E 5 HOH A 68 468 5 HOH HOH . E 5 HOH A 69 469 90 HOH HOH . E 5 HOH A 70 470 64 HOH HOH . E 5 HOH A 71 471 35 HOH HOH . E 5 HOH A 72 472 27 HOH HOH . E 5 HOH A 73 473 105 HOH HOH . E 5 HOH A 74 474 34 HOH HOH . E 5 HOH A 75 475 2 HOH HOH . E 5 HOH A 76 476 23 HOH HOH . E 5 HOH A 77 477 71 HOH HOH . E 5 HOH A 78 478 51 HOH HOH . E 5 HOH A 79 479 125 HOH HOH . E 5 HOH A 80 480 39 HOH HOH . E 5 HOH A 81 481 60 HOH HOH . E 5 HOH A 82 482 98 HOH HOH . E 5 HOH A 83 483 29 HOH HOH . E 5 HOH A 84 484 38 HOH HOH . E 5 HOH A 85 485 31 HOH HOH . E 5 HOH A 86 486 104 HOH HOH . E 5 HOH A 87 487 85 HOH HOH . E 5 HOH A 88 488 81 HOH HOH . E 5 HOH A 89 489 44 HOH HOH . E 5 HOH A 90 490 108 HOH HOH . E 5 HOH A 91 491 46 HOH HOH . E 5 HOH A 92 492 28 HOH HOH . E 5 HOH A 93 493 103 HOH HOH . E 5 HOH A 94 494 18 HOH HOH . E 5 HOH A 95 495 102 HOH HOH . E 5 HOH A 96 496 76 HOH HOH . E 5 HOH A 97 497 133 HOH HOH . E 5 HOH A 98 498 20 HOH HOH . E 5 HOH A 99 499 26 HOH HOH . E 5 HOH A 100 500 53 HOH HOH . E 5 HOH A 101 501 69 HOH HOH . E 5 HOH A 102 502 9 HOH HOH . E 5 HOH A 103 503 40 HOH HOH . E 5 HOH A 104 504 92 HOH HOH . E 5 HOH A 105 505 107 HOH HOH . E 5 HOH A 106 506 17 HOH HOH . E 5 HOH A 107 507 93 HOH HOH . E 5 HOH A 108 508 78 HOH HOH . E 5 HOH A 109 509 66 HOH HOH . E 5 HOH A 110 510 119 HOH HOH . E 5 HOH A 111 511 106 HOH HOH . E 5 HOH A 112 512 75 HOH HOH . E 5 HOH A 113 513 122 HOH HOH . E 5 HOH A 114 514 110 HOH HOH . E 5 HOH A 115 515 129 HOH HOH . E 5 HOH A 116 516 83 HOH HOH . E 5 HOH A 117 517 121 HOH HOH . E 5 HOH A 118 518 132 HOH HOH . E 5 HOH A 119 519 139 HOH HOH . E 5 HOH A 120 520 124 HOH HOH . E 5 HOH A 121 521 79 HOH HOH . E 5 HOH A 122 522 100 HOH HOH . E 5 HOH A 123 523 141 HOH HOH . E 5 HOH A 124 524 101 HOH HOH . E 5 HOH A 125 525 114 HOH HOH . E 5 HOH A 126 526 97 HOH HOH . E 5 HOH A 127 527 109 HOH HOH . E 5 HOH A 128 528 130 HOH HOH . E 5 HOH A 129 529 138 HOH HOH . E 5 HOH A 130 530 48 HOH HOH . E 5 HOH A 131 531 95 HOH HOH . E 5 HOH A 132 532 96 HOH HOH . E 5 HOH A 133 533 126 HOH HOH . E 5 HOH A 134 534 116 HOH HOH . E 5 HOH A 135 535 89 HOH HOH . E 5 HOH A 136 536 134 HOH HOH . E 5 HOH A 137 537 127 HOH HOH . E 5 HOH A 138 538 82 HOH HOH . E 5 HOH A 139 539 131 HOH HOH . E 5 HOH A 140 540 68 HOH HOH . E 5 HOH A 141 541 144 HOH HOH . E 5 HOH A 142 542 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.304 _atom_site.Cartn_y -17.588 _atom_site.Cartn_z 15.943 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #