data_5UUY # _model_server_result.job_id 7DIRI4PkzQvIDiGPXCiFmg _model_server_result.datetime_utc '2024-12-18 02:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5UUY # _exptl.entry_id 5UUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.629 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UUY _cell.length_a 64.66 _cell.length_b 85.98 _cell.length_c 93.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -85.98 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -85.98 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 B MN MN . A MN 301 1_555 E O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc11 B MN MN . A MN 301 1_555 E O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 C CA CA . A CA 302 1_555 E O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc13 C CA CA . A CA 302 1_555 E O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C14 H15 Br Cl N O6' _chem_comp.formula_weight 408.629 _chem_comp.id XMM _chem_comp.mon_nstd_flag n _chem_comp.name '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL;(5-BROMO-4-CHLORO-3-INDOLYL)-Alpha-D-MANNOSE;5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannoside;5-bromo-4-chloro-1H-indol-3-yl D-mannoside;5-bromo-4-chloro-1H-indol-3-yl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 XMM sing 363 n n O2 HO2 XMM sing 364 n n C2 C3 XMM sing 365 n n C2 C1 XMM sing 366 n n C2 H2 XMM sing 367 n n C3 O3 XMM sing 368 n n C3 C4 XMM sing 369 n n C3 H3 XMM sing 370 n n O3 HO3 XMM sing 371 n n C4 O4 XMM sing 372 n n C4 C5 XMM sing 373 n n C4 H4 XMM sing 374 n n O4 HO4 XMM sing 375 n n C5 O5 XMM sing 376 n n C5 C6 XMM sing 377 n n C5 H5 XMM sing 378 n n O5 C1 XMM sing 379 n n C6 O6 XMM sing 380 n n C6 H61 XMM sing 381 n n C6 H62 XMM sing 382 n n O6 HO6 XMM sing 383 n n C1 O1 XMM sing 384 n n C1 H1 XMM sing 385 n n O1 C7 XMM sing 386 n n C7 C8 XMM sing 387 n y C7 C11 XMM doub 388 n y C8 C9 XMM doub 389 n y C8 C10 XMM sing 390 n y C9 N1 XMM sing 391 n y C9 C12 XMM sing 392 n y N1 C11 XMM sing 393 n y N1 HN1 XMM sing 394 n n C11 H11 XMM sing 395 n n C10 CL XMM sing 396 n n C10 C13 XMM doub 397 n y C13 BR XMM sing 398 n n C13 C14 XMM sing 399 n y C14 C12 XMM doub 400 n y C14 H14 XMM sing 401 n n C12 H12 XMM sing 402 n n # _atom_sites.entry_id 5UUY _atom_sites.fract_transf_matrix[1][1] 0.015466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 3 CA A 1 302 1 CA CA . D 4 XMM A 1 303 1 XMM XMM . E 5 HOH A 1 401 8 HOH HOH . E 5 HOH A 2 402 135 HOH HOH . E 5 HOH A 3 403 41 HOH HOH . E 5 HOH A 4 404 33 HOH HOH . E 5 HOH A 5 405 86 HOH HOH . E 5 HOH A 6 406 36 HOH HOH . E 5 HOH A 7 407 14 HOH HOH . E 5 HOH A 8 408 87 HOH HOH . E 5 HOH A 9 409 10 HOH HOH . E 5 HOH A 10 410 47 HOH HOH . E 5 HOH A 11 411 25 HOH HOH . E 5 HOH A 12 412 24 HOH HOH . E 5 HOH A 13 413 50 HOH HOH . E 5 HOH A 14 414 111 HOH HOH . E 5 HOH A 15 415 37 HOH HOH . E 5 HOH A 16 416 117 HOH HOH . E 5 HOH A 17 417 140 HOH HOH . E 5 HOH A 18 418 72 HOH HOH . E 5 HOH A 19 419 45 HOH HOH . E 5 HOH A 20 420 57 HOH HOH . E 5 HOH A 21 421 58 HOH HOH . E 5 HOH A 22 422 84 HOH HOH . E 5 HOH A 23 423 67 HOH HOH . E 5 HOH A 24 424 88 HOH HOH . E 5 HOH A 25 425 32 HOH HOH . E 5 HOH A 26 426 49 HOH HOH . E 5 HOH A 27 427 91 HOH HOH . E 5 HOH A 28 428 43 HOH HOH . E 5 HOH A 29 429 1 HOH HOH . E 5 HOH A 30 430 123 HOH HOH . E 5 HOH A 31 431 143 HOH HOH . E 5 HOH A 32 432 16 HOH HOH . E 5 HOH A 33 433 4 HOH HOH . E 5 HOH A 34 434 63 HOH HOH . E 5 HOH A 35 435 136 HOH HOH . E 5 HOH A 36 436 30 HOH HOH . E 5 HOH A 37 437 21 HOH HOH . E 5 HOH A 38 438 112 HOH HOH . E 5 HOH A 39 439 59 HOH HOH . E 5 HOH A 40 440 56 HOH HOH . E 5 HOH A 41 441 113 HOH HOH . E 5 HOH A 42 442 94 HOH HOH . E 5 HOH A 43 443 61 HOH HOH . E 5 HOH A 44 444 3 HOH HOH . E 5 HOH A 45 445 11 HOH HOH . E 5 HOH A 46 446 54 HOH HOH . E 5 HOH A 47 447 73 HOH HOH . E 5 HOH A 48 448 22 HOH HOH . E 5 HOH A 49 449 13 HOH HOH . E 5 HOH A 50 450 74 HOH HOH . E 5 HOH A 51 451 70 HOH HOH . E 5 HOH A 52 452 99 HOH HOH . E 5 HOH A 53 453 65 HOH HOH . E 5 HOH A 54 454 7 HOH HOH . E 5 HOH A 55 455 62 HOH HOH . E 5 HOH A 56 456 55 HOH HOH . E 5 HOH A 57 457 42 HOH HOH . E 5 HOH A 58 458 118 HOH HOH . E 5 HOH A 59 459 15 HOH HOH . E 5 HOH A 60 460 6 HOH HOH . E 5 HOH A 61 461 12 HOH HOH . E 5 HOH A 62 462 80 HOH HOH . E 5 HOH A 63 463 115 HOH HOH . E 5 HOH A 64 464 52 HOH HOH . E 5 HOH A 65 465 128 HOH HOH . E 5 HOH A 66 466 77 HOH HOH . E 5 HOH A 67 467 19 HOH HOH . E 5 HOH A 68 468 5 HOH HOH . E 5 HOH A 69 469 90 HOH HOH . E 5 HOH A 70 470 64 HOH HOH . E 5 HOH A 71 471 35 HOH HOH . E 5 HOH A 72 472 27 HOH HOH . E 5 HOH A 73 473 105 HOH HOH . E 5 HOH A 74 474 34 HOH HOH . E 5 HOH A 75 475 2 HOH HOH . E 5 HOH A 76 476 23 HOH HOH . E 5 HOH A 77 477 71 HOH HOH . E 5 HOH A 78 478 51 HOH HOH . E 5 HOH A 79 479 125 HOH HOH . E 5 HOH A 80 480 39 HOH HOH . E 5 HOH A 81 481 60 HOH HOH . E 5 HOH A 82 482 98 HOH HOH . E 5 HOH A 83 483 29 HOH HOH . E 5 HOH A 84 484 38 HOH HOH . E 5 HOH A 85 485 31 HOH HOH . E 5 HOH A 86 486 104 HOH HOH . E 5 HOH A 87 487 85 HOH HOH . E 5 HOH A 88 488 81 HOH HOH . E 5 HOH A 89 489 44 HOH HOH . E 5 HOH A 90 490 108 HOH HOH . E 5 HOH A 91 491 46 HOH HOH . E 5 HOH A 92 492 28 HOH HOH . E 5 HOH A 93 493 103 HOH HOH . E 5 HOH A 94 494 18 HOH HOH . E 5 HOH A 95 495 102 HOH HOH . E 5 HOH A 96 496 76 HOH HOH . E 5 HOH A 97 497 133 HOH HOH . E 5 HOH A 98 498 20 HOH HOH . E 5 HOH A 99 499 26 HOH HOH . E 5 HOH A 100 500 53 HOH HOH . E 5 HOH A 101 501 69 HOH HOH . E 5 HOH A 102 502 9 HOH HOH . E 5 HOH A 103 503 40 HOH HOH . E 5 HOH A 104 504 92 HOH HOH . E 5 HOH A 105 505 107 HOH HOH . E 5 HOH A 106 506 17 HOH HOH . E 5 HOH A 107 507 93 HOH HOH . E 5 HOH A 108 508 78 HOH HOH . E 5 HOH A 109 509 66 HOH HOH . E 5 HOH A 110 510 119 HOH HOH . E 5 HOH A 111 511 106 HOH HOH . E 5 HOH A 112 512 75 HOH HOH . E 5 HOH A 113 513 122 HOH HOH . E 5 HOH A 114 514 110 HOH HOH . E 5 HOH A 115 515 129 HOH HOH . E 5 HOH A 116 516 83 HOH HOH . E 5 HOH A 117 517 121 HOH HOH . E 5 HOH A 118 518 132 HOH HOH . E 5 HOH A 119 519 139 HOH HOH . E 5 HOH A 120 520 124 HOH HOH . E 5 HOH A 121 521 79 HOH HOH . E 5 HOH A 122 522 100 HOH HOH . E 5 HOH A 123 523 141 HOH HOH . E 5 HOH A 124 524 101 HOH HOH . E 5 HOH A 125 525 114 HOH HOH . E 5 HOH A 126 526 97 HOH HOH . E 5 HOH A 127 527 109 HOH HOH . E 5 HOH A 128 528 130 HOH HOH . E 5 HOH A 129 529 138 HOH HOH . E 5 HOH A 130 530 48 HOH HOH . E 5 HOH A 131 531 95 HOH HOH . E 5 HOH A 132 532 96 HOH HOH . E 5 HOH A 133 533 126 HOH HOH . E 5 HOH A 134 534 116 HOH HOH . E 5 HOH A 135 535 89 HOH HOH . E 5 HOH A 136 536 134 HOH HOH . E 5 HOH A 137 537 127 HOH HOH . E 5 HOH A 138 538 82 HOH HOH . E 5 HOH A 139 539 131 HOH HOH . E 5 HOH A 140 540 68 HOH HOH . E 5 HOH A 141 541 144 HOH HOH . E 5 HOH A 142 542 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 XMM . . . D 4 25.989 -20.687 23.231 1 31.02 ? O2 XMM 303 A 1 HETATM 2 C C2 XMM . . . D 4 25.568 -19.282 23.283 1 27.57 ? C2 XMM 303 A 1 HETATM 3 C C3 XMM . . . D 4 24.447 -19.135 22.338 1 27.23 ? C3 XMM 303 A 1 HETATM 4 O O3 XMM . . . D 4 24.875 -19.615 20.984 1 29.64 ? O3 XMM 303 A 1 HETATM 5 C C4 XMM . . . D 4 23.222 -19.815 22.762 1 29.3 ? C4 XMM 303 A 1 HETATM 6 O O4 XMM . . . D 4 22.105 -19.229 22.011 1 26.86 ? O4 XMM 303 A 1 HETATM 7 C C5 XMM . . . D 4 22.887 -19.601 24.195 1 29.38 ? C5 XMM 303 A 1 HETATM 8 O O5 XMM . . . D 4 24.045 -19.81 25.094 1 23.97 ? O5 XMM 303 A 1 HETATM 9 C C6 XMM . . . D 4 21.753 -20.555 24.626 1 26.96 ? C6 XMM 303 A 1 HETATM 10 O O6 XMM . . . D 4 22.225 -21.854 24.717 1 26.65 ? O6 XMM 303 A 1 HETATM 11 C C1 XMM . . . D 4 25.183 -18.88 24.747 1 28.44 ? C1 XMM 303 A 1 HETATM 12 O O1 XMM . . . D 4 24.719 -17.619 24.877 1 28.84 ? O1 XMM 303 A 1 HETATM 13 C C7 XMM . . . D 4 24.195 -17.256 26.184 1 31.7 ? C7 XMM 303 A 1 HETATM 14 C C8 XMM . . . D 4 25.092 -16.636 27.014 1 32.42 ? C8 XMM 303 A 1 HETATM 15 C C9 XMM . . . D 4 24.48 -16.307 28.199 1 32.26 ? C9 XMM 303 A 1 HETATM 16 N N1 XMM . . . D 4 23.162 -16.722 28.106 1 30.81 ? N1 XMM 303 A 1 HETATM 17 C C11 XMM . . . D 4 22.973 -17.298 26.861 1 31.86 ? C11 XMM 303 A 1 HETATM 18 C C10 XMM . . . D 4 26.446 -16.352 26.774 1 32.34 ? C10 XMM 303 A 1 HETATM 19 CL CL XMM . . . D 4 27.76 -16.531 25.506 1 38.98 ? CL XMM 303 A 1 HETATM 20 C C13 XMM . . . D 4 27.209 -15.73 27.758 1 41.27 ? C13 XMM 303 A 1 HETATM 21 BR BR XMM . . . D 4 29.104 -15.134 27.858 1 56.88 ? BR XMM 303 A 1 HETATM 22 C C14 XMM . . . D 4 26.592 -15.399 28.969 1 32.98 ? C14 XMM 303 A 1 HETATM 23 C C12 XMM . . . D 4 25.231 -15.676 29.203 1 35.18 ? C12 XMM 303 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 23 #