data_5UV6 # _model_server_result.job_id STnuB7YWOQBOaVkYifDMNw _model_server_result.datetime_utc '2024-12-26 12:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2005}' # _entry.id 5UV6 # _exptl.entry_id 5UV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UV6 _cell.length_a 93.564 _cell.length_b 93.564 _cell.length_c 262.158 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1001 NAG 2 n C NAG 2 C 2 NAG A 1002 NAG 2 n C BMA 3 C 3 BMA A 1003 BMA 2 n D NAG 1 D 1 NAG B 2001 NAG 2 n D NAG 2 D 2 NAG B 2002 NAG 2 n D BMA 3 D 3 BMA B 2003 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 57 1_555 A SG CYS 80 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 122 A CYS 157 1_555 A SG CYS 167 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 209 A CYS 244 1_555 A SG CYS 261 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 22 B CYS 57 1_555 B SG CYS 80 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 122 B CYS 157 1_555 B SG CYS 167 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 209 B CYS 244 1_555 B SG CYS 261 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 35 A ASN 70 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 A ND2 ASN 258 A ASN 293 1_555 E C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale3 A ND2 ASN 271 A ASN 306 1_555 F C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B ND2 ASN 35 B ASN 70 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 B ND2 ASN 258 B ASN 293 1_555 H C1 NAG . B NAG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale6 B ND2 ASN 271 B ASN 306 1_555 G C1 NAG . B NAG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5UV6 _atom_sites.fract_transf_matrix[1][1] 0.010688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1004 1004 NAG NAG . F 3 NAG A 1 1005 1005 NAG NAG . G 3 NAG B 1 2004 2004 NAG NAG . H 3 NAG B 1 2005 2005 NAG NAG . I 4 HOH A 1 1101 13 HOH HOH . I 4 HOH A 2 1102 2 HOH HOH . I 4 HOH A 3 1103 60 HOH HOH . I 4 HOH A 4 1104 54 HOH HOH . I 4 HOH A 5 1105 37 HOH HOH . I 4 HOH A 6 1106 24 HOH HOH . I 4 HOH A 7 1107 41 HOH HOH . I 4 HOH A 8 1108 26 HOH HOH . I 4 HOH A 9 1109 63 HOH HOH . I 4 HOH A 10 1110 74 HOH HOH . I 4 HOH A 11 1111 1 HOH HOH . I 4 HOH A 12 1112 4 HOH HOH . I 4 HOH A 13 1113 49 HOH HOH . I 4 HOH A 14 1114 88 HOH HOH . I 4 HOH A 15 1115 35 HOH HOH . I 4 HOH A 16 1116 18 HOH HOH . I 4 HOH A 17 1117 9 HOH HOH . J 4 HOH B 1 2101 6 HOH HOH . J 4 HOH B 2 2102 14 HOH HOH . J 4 HOH B 3 2103 34 HOH HOH . J 4 HOH B 4 2104 50 HOH HOH . J 4 HOH B 5 2105 15 HOH HOH . J 4 HOH B 6 2106 11 HOH HOH . J 4 HOH B 7 2107 80 HOH HOH . J 4 HOH B 8 2108 81 HOH HOH . J 4 HOH B 9 2109 3 HOH HOH . J 4 HOH B 10 2110 90 HOH HOH . J 4 HOH B 11 2111 52 HOH HOH . J 4 HOH B 12 2112 31 HOH HOH . J 4 HOH B 13 2113 10 HOH HOH . J 4 HOH B 14 2114 27 HOH HOH . J 4 HOH B 15 2115 21 HOH HOH . J 4 HOH B 16 2116 16 HOH HOH . J 4 HOH B 17 2117 75 HOH HOH . J 4 HOH B 18 2118 83 HOH HOH . J 4 HOH B 19 2119 7 HOH HOH . J 4 HOH B 20 2120 25 HOH HOH . J 4 HOH B 21 2121 87 HOH HOH . J 4 HOH B 22 2122 5 HOH HOH . J 4 HOH B 23 2123 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 3 -42.432 43.469 229.841 1 82.17 ? C1 NAG 2005 B 1 HETATM 2 C C2 NAG . . . H 3 -40.983 43.352 229.389 1 93.35 ? C2 NAG 2005 B 1 HETATM 3 C C3 NAG . . . H 3 -40.817 41.999 228.788 1 85.41 ? C3 NAG 2005 B 1 HETATM 4 C C4 NAG . . . H 3 -41.054 40.924 229.821 1 88.69 ? C4 NAG 2005 B 1 HETATM 5 C C5 NAG . . . H 3 -42.422 41.072 230.513 1 95.92 ? C5 NAG 2005 B 1 HETATM 6 C C6 NAG . . . H 3 -42.495 40.195 231.734 1 98.72 ? C6 NAG 2005 B 1 HETATM 7 C C7 NAG . . . H 3 -39.999 45.719 228.931 1 116.93 ? C7 NAG 2005 B 1 HETATM 8 C C8 NAG . . . H 3 -39.603 46.819 227.938 1 125.21 ? C8 NAG 2005 B 1 HETATM 9 N N2 NAG . . . H 3 -40.588 44.46 228.443 1 108.21 ? N2 NAG 2005 B 1 HETATM 10 O O3 NAG . . . H 3 -39.485 41.848 228.21 1 78 ? O3 NAG 2005 B 1 HETATM 11 O O4 NAG . . . H 3 -40.967 39.632 229.203 1 71.57 ? O4 NAG 2005 B 1 HETATM 12 O O5 NAG . . . H 3 -42.709 42.459 230.926 1 93.03 ? O5 NAG 2005 B 1 HETATM 13 O O6 NAG . . . H 3 -41.275 40.208 232.429 1 80.41 ? O6 NAG 2005 B 1 HETATM 14 O O7 NAG . . . H 3 -39.827 45.909 230.092 1 84.03 ? O7 NAG 2005 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #