data_5UV8 # _model_server_result.job_id L4OWoXsmFDltSY4-JU2kSA _model_server_result.datetime_utc '2024-12-27 02:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 5UV8 # _exptl.entry_id 5UV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UV8 _cell.length_a 132.039 _cell.length_b 132.039 _cell.length_c 210.631 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,N,O 1 1 C,D,G,I,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 5 3 2 BMA NAG C1 O1 . O3 HO3 . sing 8 ? 5 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG A 401 NAG 3 n E NAG 2 C 2 NAG A 402 NAG 3 n E BMA 3 C 3 BMA A 403 BMA 4 n F NAG 1 D 1 NAG A 406 NAG 4 n F NAG 2 D 2 NAG A 407 NAG 4 n F BMA 3 D 3 BMA A 408 BMA 4 n F FUC 4 D 4 FUC A 405 FUC 5 n G NAG 1 E 1 NAG G 405 NAG 5 n G NAG 2 E 2 NAG G 406 NAG 5 n G BMA 3 E 3 BMA G 407 BMA 5 n G FUC 4 E 4 FUC G 404 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 52 1_555 A SG CYS 49 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 57 A CYS 76 1_555 A SG CYS 176 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf3 A SG CYS 93 A CYS 112 1_555 A SG CYS 103 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf4 A SG CYS 132 A CYS 151 1_555 A SG CYS 146 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 A SG CYS 198 A CYS 217 1_555 A SG CYS 274 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 5 B CYS 16 1_555 B SG CYS 73 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf7 C SG CYS 33 G CYS 52 1_555 C SG CYS 49 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 C SG CYS 57 G CYS 76 1_555 C SG CYS 176 G CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 93 G CYS 112 1_555 C SG CYS 103 G CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf10 C SG CYS 132 G CYS 151 1_555 C SG CYS 146 G CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf11 C SG CYS 198 G CYS 217 1_555 C SG CYS 274 G CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf12 D SG CYS 5 I CYS 16 1_555 D SG CYS 73 I CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? covale ? covale1 A ND2 ASN 61 A ASN 80 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 90 A ASN 109 1_555 H C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 A ND2 ASN 199 A ASN 218 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 61 G ASN 80 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale5 C ND2 ASN 90 G ASN 109 1_555 L C1 NAG . G NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 C ND2 ASN 199 G ASN 218 1_555 M C1 NAG . G NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale8 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale9 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 F O6 NAG . D NAG 1 1_555 F C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale12 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 G O6 NAG . E NAG 1 1_555 G C1 FUC . E FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 G O3 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 5UV8 _atom_sites.fract_transf_matrix[1][1] 0.007574 _atom_sites.fract_transf_matrix[1][2] 0.004373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 NAG A 1 404 404 NAG NAG . I 7 GOL G 1 401 401 GOL GOL . J 7 GOL G 1 402 402 GOL GOL . K 7 GOL G 1 403 403 GOL GOL . L 6 NAG G 1 408 408 NAG NAG . M 6 NAG G 1 409 409 NAG NAG . N 8 HOH A 1 501 502 HOH HOH . N 8 HOH A 2 502 501 HOH HOH . N 8 HOH A 3 503 507 HOH HOH . N 8 HOH A 4 504 504 HOH HOH . N 8 HOH A 5 505 503 HOH HOH . N 8 HOH A 6 506 508 HOH HOH . N 8 HOH A 7 507 514 HOH HOH . N 8 HOH A 8 508 517 HOH HOH . N 8 HOH A 9 509 513 HOH HOH . N 8 HOH A 10 510 516 HOH HOH . N 8 HOH A 11 511 512 HOH HOH . N 8 HOH A 12 512 521 HOH HOH . N 8 HOH A 13 513 515 HOH HOH . N 8 HOH A 14 514 510 HOH HOH . N 8 HOH A 15 515 522 HOH HOH . N 8 HOH A 16 516 520 HOH HOH . N 8 HOH A 17 517 506 HOH HOH . N 8 HOH A 18 518 519 HOH HOH . N 8 HOH A 19 519 505 HOH HOH . N 8 HOH A 20 520 518 HOH HOH . N 8 HOH A 21 521 524 HOH HOH . N 8 HOH A 22 522 509 HOH HOH . N 8 HOH A 23 523 526 HOH HOH . N 8 HOH A 24 524 525 HOH HOH . N 8 HOH A 25 525 532 HOH HOH . N 8 HOH A 26 526 528 HOH HOH . N 8 HOH A 27 527 527 HOH HOH . N 8 HOH A 28 528 534 HOH HOH . N 8 HOH A 29 529 530 HOH HOH . N 8 HOH A 30 530 533 HOH HOH . N 8 HOH A 31 531 531 HOH HOH . N 8 HOH A 32 532 535 HOH HOH . N 8 HOH A 33 533 536 HOH HOH . O 8 HOH B 1 201 511 HOH HOH . O 8 HOH B 2 202 201 HOH HOH . O 8 HOH B 3 203 202 HOH HOH . O 8 HOH B 4 204 203 HOH HOH . O 8 HOH B 5 205 206 HOH HOH . O 8 HOH B 6 206 204 HOH HOH . O 8 HOH B 7 207 205 HOH HOH . O 8 HOH B 8 208 207 HOH HOH . O 8 HOH B 9 209 208 HOH HOH . P 8 HOH G 1 501 501 HOH HOH . P 8 HOH G 2 502 513 HOH HOH . P 8 HOH G 3 503 505 HOH HOH . P 8 HOH G 4 504 508 HOH HOH . P 8 HOH G 5 505 509 HOH HOH . P 8 HOH G 6 506 515 HOH HOH . P 8 HOH G 7 507 511 HOH HOH . P 8 HOH G 8 508 506 HOH HOH . P 8 HOH G 9 509 516 HOH HOH . P 8 HOH G 10 510 517 HOH HOH . P 8 HOH G 11 511 526 HOH HOH . P 8 HOH G 12 512 510 HOH HOH . P 8 HOH G 13 513 504 HOH HOH . P 8 HOH G 14 514 503 HOH HOH . P 8 HOH G 15 515 512 HOH HOH . P 8 HOH G 16 516 514 HOH HOH . P 8 HOH G 17 517 524 HOH HOH . P 8 HOH G 18 518 507 HOH HOH . P 8 HOH G 19 519 521 HOH HOH . P 8 HOH G 20 520 523 HOH HOH . P 8 HOH G 21 521 520 HOH HOH . P 8 HOH G 22 522 529 HOH HOH . P 8 HOH G 23 523 530 HOH HOH . P 8 HOH G 24 524 518 HOH HOH . P 8 HOH G 25 525 529 HOH HOH . P 8 HOH G 26 526 202 HOH HOH . P 8 HOH G 27 527 522 HOH HOH . P 8 HOH G 28 528 527 HOH HOH . P 8 HOH G 29 529 502 HOH HOH . P 8 HOH G 30 530 537 HOH HOH . P 8 HOH G 31 531 536 HOH HOH . P 8 HOH G 32 532 534 HOH HOH . P 8 HOH G 33 533 539 HOH HOH . P 8 HOH G 34 534 519 HOH HOH . P 8 HOH G 35 535 532 HOH HOH . P 8 HOH G 36 536 523 HOH HOH . P 8 HOH G 37 537 528 HOH HOH . P 8 HOH G 38 538 533 HOH HOH . P 8 HOH G 39 539 531 HOH HOH . P 8 HOH G 40 540 535 HOH HOH . P 8 HOH G 41 541 538 HOH HOH . P 8 HOH G 42 542 525 HOH HOH . P 8 HOH G 43 543 542 HOH HOH . P 8 HOH G 44 544 540 HOH HOH . P 8 HOH G 45 545 541 HOH HOH . Q 8 HOH I 1 201 201 HOH HOH . Q 8 HOH I 2 202 203 HOH HOH . Q 8 HOH I 3 203 204 HOH HOH . Q 8 HOH I 4 204 206 HOH HOH . Q 8 HOH I 5 205 211 HOH HOH . Q 8 HOH I 6 206 207 HOH HOH . Q 8 HOH I 7 207 209 HOH HOH . Q 8 HOH I 8 208 205 HOH HOH . Q 8 HOH I 9 209 212 HOH HOH . Q 8 HOH I 10 210 210 HOH HOH . Q 8 HOH I 11 211 214 HOH HOH . Q 8 HOH I 12 212 208 HOH HOH . Q 8 HOH I 13 213 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 7 -38.156 268.397 13.819 1 39.89 ? C1 GOL 401 G 1 HETATM 2 O O1 GOL . . . I 7 -37.006 267.544 13.782 1 41.13 ? O1 GOL 401 G 1 HETATM 3 C C2 GOL . . . I 7 -39.094 268.214 15.024 1 39.77 ? C2 GOL 401 G 1 HETATM 4 O O2 GOL . . . I 7 -39.698 266.912 14.984 1 41.44 ? O2 GOL 401 G 1 HETATM 5 C C3 GOL . . . I 7 -38.42 268.322 16.385 1 38.5 ? C3 GOL 401 G 1 HETATM 6 O O3 GOL . . . I 7 -38.004 269.642 16.739 1 37.05 ? O3 GOL 401 G 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #