data_5UVC # _model_server_result.job_id i24ZG6PzkVB5vz1PLeSUZg _model_server_result.datetime_utc '2024-10-19 16:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 5UVC # _exptl.entry_id 5UVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-benzyl-3-({[5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl]methyl}amino)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UVC _cell.length_a 113.157 _cell.length_b 113.157 _cell.length_c 95.427 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H20 N6 O' _chem_comp.formula_weight 384.434 _chem_comp.id 8PV _chem_comp.mon_nstd_flag . _chem_comp.name N-benzyl-3-({[5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl]methyl}amino)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 8PV doub 1 n y C8 C9 8PV sing 2 n y C7 C6 8PV sing 3 n y C9 C10 8PV doub 4 n y C17 N16 8PV sing 5 n n C17 C18 8PV sing 6 n n C6 C5 8PV doub 7 n y C10 C5 8PV sing 8 n y N16 C15 8PV sing 9 n n C5 C4 8PV sing 10 n n C18 N19 8PV sing 11 n y C18 N22 8PV doub 12 n y C15 C30 8PV doub 13 n y C15 C14 8PV sing 14 n y N19 C20 8PV sing 15 n y C30 C11 8PV sing 16 n y C14 C13 8PV doub 17 n y N3 C4 8PV sing 18 n n N3 C2 8PV sing 19 n n C25 C26 8PV doub 20 n y C25 C24 8PV sing 21 n y C11 C2 8PV sing 22 n n C11 C12 8PV doub 23 n y C13 C12 8PV sing 24 n y N22 N21 8PV sing 25 n y C20 C24 8PV sing 26 n n C20 N21 8PV doub 27 n y C2 O1 8PV doub 28 n n C26 N27 8PV sing 29 n y C24 C29 8PV doub 30 n y N27 C28 8PV doub 31 n y C29 C28 8PV sing 32 n y N3 H1 8PV sing 33 n n C4 H2 8PV sing 34 n n C4 H3 8PV sing 35 n n C6 H4 8PV sing 36 n n C7 H5 8PV sing 37 n n C8 H6 8PV sing 38 n n C10 H7 8PV sing 39 n n C13 H8 8PV sing 40 n n C17 H9 8PV sing 41 n n C17 H10 8PV sing 42 n n C26 H11 8PV sing 43 n n C28 H12 8PV sing 44 n n C9 H13 8PV sing 45 n n C12 H14 8PV sing 46 n n C14 H15 8PV sing 47 n n N16 H16 8PV sing 48 n n N19 H17 8PV sing 49 n n C25 H18 8PV sing 50 n n C29 H19 8PV sing 51 n n C30 H20 8PV sing 52 n n # _atom_sites.entry_id 5UVC _atom_sites.fract_transf_matrix[1][1] 0.008837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8PV A 1 600 600 8PV LIG . C 3 SO4 A 1 601 601 SO4 SO4 . D 3 SO4 A 1 602 602 SO4 SO4 . E 4 HOH A 1 701 25 HOH HOH . E 4 HOH A 2 702 51 HOH HOH . E 4 HOH A 3 703 49 HOH HOH . E 4 HOH A 4 704 39 HOH HOH . E 4 HOH A 5 705 28 HOH HOH . E 4 HOH A 6 706 62 HOH HOH . E 4 HOH A 7 707 2 HOH HOH . E 4 HOH A 8 708 57 HOH HOH . E 4 HOH A 9 709 31 HOH HOH . E 4 HOH A 10 710 23 HOH HOH . E 4 HOH A 11 711 68 HOH HOH . E 4 HOH A 12 712 71 HOH HOH . E 4 HOH A 13 713 14 HOH HOH . E 4 HOH A 14 714 33 HOH HOH . E 4 HOH A 15 715 7 HOH HOH . E 4 HOH A 16 716 3 HOH HOH . E 4 HOH A 17 717 17 HOH HOH . E 4 HOH A 18 718 13 HOH HOH . E 4 HOH A 19 719 35 HOH HOH . E 4 HOH A 20 720 22 HOH HOH . E 4 HOH A 21 721 54 HOH HOH . E 4 HOH A 22 722 30 HOH HOH . E 4 HOH A 23 723 19 HOH HOH . E 4 HOH A 24 724 74 HOH HOH . E 4 HOH A 25 725 26 HOH HOH . E 4 HOH A 26 726 10 HOH HOH . E 4 HOH A 27 727 55 HOH HOH . E 4 HOH A 28 728 48 HOH HOH . E 4 HOH A 29 729 50 HOH HOH . E 4 HOH A 30 730 65 HOH HOH . E 4 HOH A 31 731 70 HOH HOH . E 4 HOH A 32 732 56 HOH HOH . E 4 HOH A 33 733 64 HOH HOH . E 4 HOH A 34 734 1 HOH HOH . E 4 HOH A 35 735 58 HOH HOH . E 4 HOH A 36 736 52 HOH HOH . E 4 HOH A 37 737 38 HOH HOH . E 4 HOH A 38 738 37 HOH HOH . E 4 HOH A 39 739 12 HOH HOH . E 4 HOH A 40 740 69 HOH HOH . E 4 HOH A 41 741 40 HOH HOH . E 4 HOH A 42 742 47 HOH HOH . E 4 HOH A 43 743 60 HOH HOH . E 4 HOH A 44 744 27 HOH HOH . E 4 HOH A 45 745 73 HOH HOH . E 4 HOH A 46 746 9 HOH HOH . E 4 HOH A 47 747 72 HOH HOH . E 4 HOH A 48 748 44 HOH HOH . E 4 HOH A 49 749 61 HOH HOH . E 4 HOH A 50 750 41 HOH HOH . E 4 HOH A 51 751 43 HOH HOH . E 4 HOH A 52 752 21 HOH HOH . E 4 HOH A 53 753 8 HOH HOH . E 4 HOH A 54 754 4 HOH HOH . E 4 HOH A 55 755 46 HOH HOH . E 4 HOH A 56 756 66 HOH HOH . E 4 HOH A 57 757 20 HOH HOH . E 4 HOH A 58 758 6 HOH HOH . E 4 HOH A 59 759 53 HOH HOH . E 4 HOH A 60 760 32 HOH HOH . E 4 HOH A 61 761 36 HOH HOH . E 4 HOH A 62 762 29 HOH HOH . E 4 HOH A 63 763 24 HOH HOH . E 4 HOH A 64 764 16 HOH HOH . E 4 HOH A 65 765 18 HOH HOH . E 4 HOH A 66 766 34 HOH HOH . E 4 HOH A 67 767 59 HOH HOH . E 4 HOH A 68 768 15 HOH HOH . E 4 HOH A 69 769 63 HOH HOH . E 4 HOH A 70 770 45 HOH HOH . E 4 HOH A 71 771 11 HOH HOH . E 4 HOH A 72 772 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 8PV . . . B 2 8.271 44.015 0.963 1 88.51 ? N3 8PV 600 A 1 HETATM 2 C C4 8PV . . . B 2 7.185 44.993 1.189 1 97.35 ? C4 8PV 600 A 1 HETATM 3 C C5 8PV . . . B 2 6.266 45.069 -0.02 1 105.27 ? C5 8PV 600 A 1 HETATM 4 C C6 8PV . . . B 2 6.151 46.267 -0.738 1 108.28 ? C6 8PV 600 A 1 HETATM 5 C C7 8PV . . . B 2 5.307 46.344 -1.849 1 108.1 ? C7 8PV 600 A 1 HETATM 6 C C8 8PV . . . B 2 4.573 45.227 -2.249 1 105.18 ? C8 8PV 600 A 1 HETATM 7 C C10 8PV . . . B 2 5.523 43.95 -0.425 1 105.08 ? C10 8PV 600 A 1 HETATM 8 C C13 8PV . . . B 2 12.802 42.175 1.327 1 70.73 ? C13 8PV 600 A 1 HETATM 9 C C15 8PV . . . B 2 11.067 40.813 0.321 1 69.06 ? C15 8PV 600 A 1 HETATM 10 C C17 8PV . . . B 2 11.492 38.57 -0.818 1 65.02 ? C17 8PV 600 A 1 HETATM 11 C C20 8PV . . . B 2 12.628 36.043 1.519 1 54.51 ? C20 8PV 600 A 1 HETATM 12 C C24 8PV . . . B 2 13.514 34.949 1.979 1 51.03 ? C24 8PV 600 A 1 HETATM 13 C C26 8PV . . . B 2 15.372 33.463 1.663 1 49.22 ? C26 8PV 600 A 1 HETATM 14 C C28 8PV . . . B 2 14.086 33.271 3.608 1 46.41 ? C28 8PV 600 A 1 HETATM 15 O O1 8PV . . . B 2 9.714 44.901 2.441 1 80.58 ? O1 8PV 600 A 1 HETATM 16 C C2 8PV . . . B 2 9.472 44.033 1.614 1 81.84 ? C2 8PV 600 A 1 HETATM 17 C C9 8PV . . . B 2 4.681 44.03 -1.539 1 104.32 ? C9 8PV 600 A 1 HETATM 18 C C11 8PV . . . B 2 10.499 42.984 1.297 1 76.01 ? C11 8PV 600 A 1 HETATM 19 C C12 8PV . . . B 2 11.861 43.157 1.638 1 74.68 ? C12 8PV 600 A 1 HETATM 20 C C14 8PV . . . B 2 12.416 41.01 0.672 1 67.94 ? C14 8PV 600 A 1 HETATM 21 N N16 8PV . . . B 2 10.614 39.656 -0.343 1 67.16 ? N16 8PV 600 A 1 HETATM 22 C C18 8PV . . . B 2 11.746 37.595 0.302 1 60.5 ? C18 8PV 600 A 1 HETATM 23 N N19 8PV . . . B 2 12.718 36.727 0.367 1 57.58 ? N19 8PV 600 A 1 HETATM 24 N N21 8PV . . . B 2 11.589 36.476 2.186 1 56.98 ? N21 8PV 600 A 1 HETATM 25 N N22 8PV . . . B 2 11.008 37.482 1.418 1 59.54 ? N22 8PV 600 A 1 HETATM 26 C C25 8PV . . . B 2 14.593 34.505 1.189 1 50.1 ? C25 8PV 600 A 1 HETATM 27 N N27 8PV . . . B 2 15.099 32.892 2.837 1 47.71 ? N27 8PV 600 A 1 HETATM 28 C C29 8PV . . . B 2 13.258 34.305 3.21 1 48.02 ? C29 8PV 600 A 1 HETATM 29 C C30 8PV . . . B 2 10.12 41.797 0.636 1 72.3 ? C30 8PV 600 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #