data_5UVM # _model_server_result.job_id GYIpiCQliFdu8JuMUZ2Ckw _model_server_result.datetime_utc '2024-10-20 22:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":207}' # _entry.id 5UVM # _exptl.entry_id 5UVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UVM _cell.length_a 78.804 _cell.length_b 78.804 _cell.length_c 114.885 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,KA 1 1,3 B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,LA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_564 x,-y+1,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 78.804 -57.4425 3 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 78.804 78.804 28.72125 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id BA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 141 A ASP 108 1_555 A N MSE 142 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 142 A MSE 109 1_555 A N GLY 143 A GLY 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C ASP 141 B ASP 108 1_555 B N MSE 142 B MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MSE 142 B MSE 109 1_555 B N GLY 143 B GLY 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 37 A CYS 4 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A SG CYS 40 A CYS 7 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A ND1 HIS 79 A HIS 46 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A ND1 HIS 131 A HIS 98 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 B SG CYS 37 B CYS 4 1_555 V ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 B SG CYS 40 B CYS 7 1_555 V ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 B ND1 HIS 79 B HIS 46 1_555 V ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 B ND1 HIS 131 B HIS 98 1_555 V ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 5UVM _atom_sites.fract_transf_matrix[1][1] 0.01269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 201 ZN ZN . D 3 UNX A 1 202 401 UNX UNX . E 3 UNX A 1 203 402 UNX UNX . F 3 UNX A 1 204 407 UNX UNX . G 3 UNX A 1 205 416 UNX UNX . H 3 UNX A 1 206 418 UNX UNX . I 3 UNX A 1 207 419 UNX UNX . J 3 UNX A 1 208 423 UNX UNX . K 3 UNX A 1 209 426 UNX UNX . L 3 UNX A 1 210 408 UNX UNX . M 3 UNX A 1 211 410 UNX UNX . N 3 UNX A 1 212 415 UNX UNX . O 3 UNX A 1 213 1 UNX UNX . P 3 UNX A 1 214 2 UNX UNX . Q 3 UNX A 1 215 3 UNX UNX . R 3 UNX A 1 216 7 UNX UNX . S 3 UNX A 1 217 8 UNX UNX . T 3 UNX A 1 218 9 UNX UNX . U 3 UNX A 1 219 10 UNX UNX . V 2 ZN B 1 201 201 ZN ZN . W 3 UNX B 1 202 411 UNX UNX . X 3 UNX B 1 203 412 UNX UNX . Y 3 UNX B 1 204 422 UNX UNX . Z 3 UNX B 1 205 424 UNX UNX . AA 3 UNX B 1 206 425 UNX UNX . BA 4 ADN B 1 207 1 ADN ADN . CA 3 UNX B 1 208 4 UNX UNX . DA 3 UNX B 1 209 5 UNX UNX . EA 3 UNX B 1 210 6 UNX UNX . FA 3 UNX B 1 211 11 UNX UNX . GA 3 UNX B 1 212 12 UNX UNX . HA 3 UNX B 1 213 13 UNX UNX . IA 3 UNX B 1 214 14 UNX UNX . JA 3 UNX B 1 215 15 UNX UNX . KA 5 HOH A 1 301 434 HOH HOH . KA 5 HOH A 2 302 436 HOH HOH . KA 5 HOH A 3 303 433 HOH HOH . KA 5 HOH A 4 304 439 HOH HOH . KA 5 HOH A 5 305 437 HOH HOH . KA 5 HOH A 6 306 440 HOH HOH . KA 5 HOH A 7 307 3 HOH HOH . KA 5 HOH A 8 308 430 HOH HOH . KA 5 HOH A 9 309 428 HOH HOH . KA 5 HOH A 10 310 9 HOH HOH . KA 5 HOH A 11 311 8 HOH HOH . KA 5 HOH A 12 312 427 HOH HOH . KA 5 HOH A 13 313 2 HOH HOH . LA 5 HOH B 1 301 435 HOH HOH . LA 5 HOH B 2 302 10 HOH HOH . LA 5 HOH B 3 303 434 HOH HOH . LA 5 HOH B 4 304 437 HOH HOH . LA 5 HOH B 5 305 441 HOH HOH . LA 5 HOH B 6 306 445 HOH HOH . LA 5 HOH B 7 307 1 HOH HOH . LA 5 HOH B 8 308 439 HOH HOH . LA 5 HOH B 9 309 7 HOH HOH . LA 5 HOH B 10 310 448 HOH HOH . LA 5 HOH B 11 311 5 HOH HOH . LA 5 HOH B 12 312 4 HOH HOH . LA 5 HOH B 13 313 436 HOH HOH . LA 5 HOH B 14 314 6 HOH HOH . LA 5 HOH B 15 315 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . BA 4 4.294 50.124 -24.108 1 49.84 ? O5' ADN 207 B 1 HETATM 2 C C5' ADN . . . BA 4 3.767 51.091 -23.2 1 38.56 ? C5' ADN 207 B 1 HETATM 3 C C4' ADN . . . BA 4 3.513 50.4 -21.888 1 36.89 ? C4' ADN 207 B 1 HETATM 4 O O4' ADN . . . BA 4 3.976 51.226 -20.792 1 32.37 ? O4' ADN 207 B 1 HETATM 5 C C3' ADN . . . BA 4 2.04 50.075 -21.624 1 33.83 ? C3' ADN 207 B 1 HETATM 6 O O3' ADN . . . BA 4 1.873 48.699 -21.299 1 31.68 ? O3' ADN 207 B 1 HETATM 7 C C2' ADN . . . BA 4 1.693 50.967 -20.427 1 34.11 ? C2' ADN 207 B 1 HETATM 8 O O2' ADN . . . BA 4 0.694 50.313 -19.651 1 32.2 ? O2' ADN 207 B 1 HETATM 9 C C1' ADN . . . BA 4 3.057 51.044 -19.738 1 32.04 ? C1' ADN 207 B 1 HETATM 10 N N9 ADN . . . BA 4 3.229 52.145 -18.808 1 31.85 ? N9 ADN 207 B 1 HETATM 11 C C8 ADN . . . BA 4 2.952 53.463 -19.053 1 33.98 ? C8 ADN 207 B 1 HETATM 12 N N7 ADN . . . BA 4 3.284 54.271 -18.079 1 35.35 ? N7 ADN 207 B 1 HETATM 13 C C5 ADN . . . BA 4 3.826 53.426 -17.123 1 33.73 ? C5 ADN 207 B 1 HETATM 14 C C6 ADN . . . BA 4 4.407 53.669 -15.859 1 34.64 ? C6 ADN 207 B 1 HETATM 15 N N6 ADN . . . BA 4 4.501 54.884 -15.304 1 32.87 ? N6 ADN 207 B 1 HETATM 16 N N1 ADN . . . BA 4 4.876 52.602 -15.168 1 35.1 ? N1 ADN 207 B 1 HETATM 17 C C2 ADN . . . BA 4 4.747 51.382 -15.708 1 35.28 ? C2 ADN 207 B 1 HETATM 18 N N3 ADN . . . BA 4 4.214 51.039 -16.89 1 33.47 ? N3 ADN 207 B 1 HETATM 19 C C4 ADN . . . BA 4 3.786 52.11 -17.555 1 30.1 ? C4 ADN 207 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #