data_5UVZ # _model_server_result.job_id RYPuOX1s9YqzG6mj-eX-mg _model_server_result.datetime_utc '2024-10-19 03:50:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5UVZ # _exptl.entry_id 5UVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.317 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-5-(2-phenoxyphenyl)pyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UVZ _cell.length_a 57.267 _cell.length_b 73.642 _cell.length_c 33.719 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H15 N O2' _chem_comp.formula_weight 277.317 _chem_comp.id 8NP _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-5-(2-phenoxyphenyl)pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C16 8NP sing 1 n n O20 C17 8NP doub 2 n n C16 C17 8NP sing 3 n n C16 C13 8NP doub 4 n n C17 N19 8NP sing 5 n n C13 C15 8NP sing 6 n n N19 C14 8NP sing 7 n n C6 C2 8NP doub 8 n y C6 C10 8NP sing 9 n y C15 C14 8NP doub 10 n n C15 C10 8NP sing 11 n n C2 C5 8NP sing 12 n y C10 C12 8NP doub 13 n y C5 C9 8NP doub 14 n y C12 C9 8NP sing 15 n y C12 O21 8NP sing 16 n n O21 C11 8NP sing 17 n n C11 C7 8NP doub 18 n y C11 C8 8NP sing 19 n y C7 C3 8NP sing 20 n y C8 C4 8NP doub 21 n y C3 C1 8NP doub 22 n y C4 C1 8NP sing 23 n y C4 H1 8NP sing 24 n n C5 H2 8NP sing 25 n n C6 H3 8NP sing 26 n n C7 H4 8NP sing 27 n n C8 H5 8NP sing 28 n n C13 H6 8NP sing 29 n n C1 H7 8NP sing 30 n n C2 H8 8NP sing 31 n n C3 H9 8NP sing 32 n n C9 H10 8NP sing 33 n n C14 H11 8NP sing 34 n n C18 H13 8NP sing 35 n n C18 H14 8NP sing 36 n n C18 H15 8NP sing 37 n n N19 H12 8NP sing 38 n n # _atom_sites.entry_id 5UVZ _atom_sites.fract_transf_matrix[1][1] 0.017462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8NP A 1 501 1 8NP LIG . C 3 HOH A 1 601 67 HOH HOH . C 3 HOH A 2 602 1 HOH HOH . C 3 HOH A 3 603 38 HOH HOH . C 3 HOH A 4 604 39 HOH HOH . C 3 HOH A 5 605 40 HOH HOH . C 3 HOH A 6 606 120 HOH HOH . C 3 HOH A 7 607 3 HOH HOH . C 3 HOH A 8 608 28 HOH HOH . C 3 HOH A 9 609 4 HOH HOH . C 3 HOH A 10 610 35 HOH HOH . C 3 HOH A 11 611 44 HOH HOH . C 3 HOH A 12 612 122 HOH HOH . C 3 HOH A 13 613 88 HOH HOH . C 3 HOH A 14 614 68 HOH HOH . C 3 HOH A 15 615 47 HOH HOH . C 3 HOH A 16 616 112 HOH HOH . C 3 HOH A 17 617 6 HOH HOH . C 3 HOH A 18 618 13 HOH HOH . C 3 HOH A 19 619 127 HOH HOH . C 3 HOH A 20 620 22 HOH HOH . C 3 HOH A 21 621 55 HOH HOH . C 3 HOH A 22 622 109 HOH HOH . C 3 HOH A 23 623 115 HOH HOH . C 3 HOH A 24 624 14 HOH HOH . C 3 HOH A 25 625 12 HOH HOH . C 3 HOH A 26 626 52 HOH HOH . C 3 HOH A 27 627 132 HOH HOH . C 3 HOH A 28 628 53 HOH HOH . C 3 HOH A 29 629 113 HOH HOH . C 3 HOH A 30 630 7 HOH HOH . C 3 HOH A 31 631 83 HOH HOH . C 3 HOH A 32 632 62 HOH HOH . C 3 HOH A 33 633 60 HOH HOH . C 3 HOH A 34 634 80 HOH HOH . C 3 HOH A 35 635 24 HOH HOH . C 3 HOH A 36 636 10 HOH HOH . C 3 HOH A 37 637 29 HOH HOH . C 3 HOH A 38 638 17 HOH HOH . C 3 HOH A 39 639 42 HOH HOH . C 3 HOH A 40 640 9 HOH HOH . C 3 HOH A 41 641 102 HOH HOH . C 3 HOH A 42 642 21 HOH HOH . C 3 HOH A 43 643 118 HOH HOH . C 3 HOH A 44 644 23 HOH HOH . C 3 HOH A 45 645 59 HOH HOH . C 3 HOH A 46 646 79 HOH HOH . C 3 HOH A 47 647 123 HOH HOH . C 3 HOH A 48 648 105 HOH HOH . C 3 HOH A 49 649 108 HOH HOH . C 3 HOH A 50 650 103 HOH HOH . C 3 HOH A 51 651 125 HOH HOH . C 3 HOH A 52 652 45 HOH HOH . C 3 HOH A 53 653 56 HOH HOH . C 3 HOH A 54 654 46 HOH HOH . C 3 HOH A 55 655 8 HOH HOH . C 3 HOH A 56 656 27 HOH HOH . C 3 HOH A 57 657 11 HOH HOH . C 3 HOH A 58 658 20 HOH HOH . C 3 HOH A 59 659 84 HOH HOH . C 3 HOH A 60 660 144 HOH HOH . C 3 HOH A 61 661 63 HOH HOH . C 3 HOH A 62 662 43 HOH HOH . C 3 HOH A 63 663 136 HOH HOH . C 3 HOH A 64 664 31 HOH HOH . C 3 HOH A 65 665 34 HOH HOH . C 3 HOH A 66 666 111 HOH HOH . C 3 HOH A 67 667 5 HOH HOH . C 3 HOH A 68 668 74 HOH HOH . C 3 HOH A 69 669 116 HOH HOH . C 3 HOH A 70 670 71 HOH HOH . C 3 HOH A 71 671 131 HOH HOH . C 3 HOH A 72 672 26 HOH HOH . C 3 HOH A 73 673 37 HOH HOH . C 3 HOH A 74 674 30 HOH HOH . C 3 HOH A 75 675 15 HOH HOH . C 3 HOH A 76 676 16 HOH HOH . C 3 HOH A 77 677 2 HOH HOH . C 3 HOH A 78 678 95 HOH HOH . C 3 HOH A 79 679 48 HOH HOH . C 3 HOH A 80 680 33 HOH HOH . C 3 HOH A 81 681 41 HOH HOH . C 3 HOH A 82 682 121 HOH HOH . C 3 HOH A 83 683 54 HOH HOH . C 3 HOH A 84 684 89 HOH HOH . C 3 HOH A 85 685 18 HOH HOH . C 3 HOH A 86 686 49 HOH HOH . C 3 HOH A 87 687 94 HOH HOH . C 3 HOH A 88 688 143 HOH HOH . C 3 HOH A 89 689 19 HOH HOH . C 3 HOH A 90 690 69 HOH HOH . C 3 HOH A 91 691 110 HOH HOH . C 3 HOH A 92 692 117 HOH HOH . C 3 HOH A 93 693 36 HOH HOH . C 3 HOH A 94 694 133 HOH HOH . C 3 HOH A 95 695 82 HOH HOH . C 3 HOH A 96 696 85 HOH HOH . C 3 HOH A 97 697 126 HOH HOH . C 3 HOH A 98 698 90 HOH HOH . C 3 HOH A 99 699 32 HOH HOH . C 3 HOH A 100 700 99 HOH HOH . C 3 HOH A 101 701 142 HOH HOH . C 3 HOH A 102 702 78 HOH HOH . C 3 HOH A 103 703 104 HOH HOH . C 3 HOH A 104 704 93 HOH HOH . C 3 HOH A 105 705 76 HOH HOH . C 3 HOH A 106 706 66 HOH HOH . C 3 HOH A 107 707 86 HOH HOH . C 3 HOH A 108 708 114 HOH HOH . C 3 HOH A 109 709 25 HOH HOH . C 3 HOH A 110 710 92 HOH HOH . C 3 HOH A 111 711 51 HOH HOH . C 3 HOH A 112 712 73 HOH HOH . C 3 HOH A 113 713 119 HOH HOH . C 3 HOH A 114 714 91 HOH HOH . C 3 HOH A 115 715 57 HOH HOH . C 3 HOH A 116 716 70 HOH HOH . C 3 HOH A 117 717 100 HOH HOH . C 3 HOH A 118 718 77 HOH HOH . C 3 HOH A 119 719 139 HOH HOH . C 3 HOH A 120 720 81 HOH HOH . C 3 HOH A 121 721 107 HOH HOH . C 3 HOH A 122 722 72 HOH HOH . C 3 HOH A 123 723 141 HOH HOH . C 3 HOH A 124 724 134 HOH HOH . C 3 HOH A 125 725 129 HOH HOH . C 3 HOH A 126 726 135 HOH HOH . C 3 HOH A 127 727 137 HOH HOH . C 3 HOH A 128 728 50 HOH HOH . C 3 HOH A 129 729 130 HOH HOH . C 3 HOH A 130 730 64 HOH HOH . C 3 HOH A 131 731 58 HOH HOH . C 3 HOH A 132 732 128 HOH HOH . C 3 HOH A 133 733 65 HOH HOH . C 3 HOH A 134 734 138 HOH HOH . C 3 HOH A 135 735 75 HOH HOH . C 3 HOH A 136 736 61 HOH HOH . C 3 HOH A 137 737 106 HOH HOH . C 3 HOH A 138 738 140 HOH HOH . C 3 HOH A 139 739 96 HOH HOH . C 3 HOH A 140 740 97 HOH HOH . C 3 HOH A 141 741 124 HOH HOH . C 3 HOH A 142 742 101 HOH HOH . C 3 HOH A 143 743 87 HOH HOH . C 3 HOH A 144 744 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 8NP . . . B 2 12.697 -11.364 6.886 1 47.89 ? C4 8NP 501 A 1 HETATM 2 C C5 8NP . . . B 2 17.919 -10.701 2.87 1 51.88 ? C5 8NP 501 A 1 HETATM 3 C C6 8NP . . . B 2 16.33 -10.285 1.132 1 49.1 ? C6 8NP 501 A 1 HETATM 4 C C7 8NP . . . B 2 14.22 -9.919 5.093 1 45.24 ? C7 8NP 501 A 1 HETATM 5 C C8 8NP . . . B 2 13.33 -12.008 5.842 1 47.79 ? C8 8NP 501 A 1 HETATM 6 C C10 8NP . . . B 2 15.324 -10.893 1.864 1 45.49 ? C10 8NP 501 A 1 HETATM 7 C C13 8NP . . . B 2 13.433 -9.999 0.362 1 36.31 ? C13 8NP 501 A 1 HETATM 8 C C15 8NP . . . B 2 14.003 -11.007 1.219 1 41.05 ? C15 8NP 501 A 1 HETATM 9 C C17 8NP . . . B 2 11.5 -11.394 -0.09 1 33.76 ? C17 8NP 501 A 1 HETATM 10 C C1 8NP . . . B 2 12.827 -9.999 7.036 1 47.46 ? C1 8NP 501 A 1 HETATM 11 C C2 8NP . . . B 2 17.616 -10.187 1.625 1 50.87 ? C2 8NP 501 A 1 HETATM 12 C C3 8NP . . . B 2 13.59 -9.279 6.14 1 46.75 ? C3 8NP 501 A 1 HETATM 13 C C9 8NP . . . B 2 16.927 -11.288 3.63 1 49.91 ? C9 8NP 501 A 1 HETATM 14 C C11 8NP . . . B 2 14.094 -11.286 4.947 1 47.44 ? C11 8NP 501 A 1 HETATM 15 C C12 8NP . . . B 2 15.641 -11.375 3.128 1 47.66 ? C12 8NP 501 A 1 HETATM 16 C C14 8NP . . . B 2 13.313 -12.143 1.358 1 40.17 ? C14 8NP 501 A 1 HETATM 17 C C16 8NP . . . B 2 12.263 -10.134 -0.277 1 34.57 ? C16 8NP 501 A 1 HETATM 18 C C18 8NP . . . B 2 11.692 -9.091 -1.156 1 33.06 ? C18 8NP 501 A 1 HETATM 19 N N19 8NP . . . B 2 12.104 -12.313 0.743 1 40.07 ? N19 8NP 501 A 1 HETATM 20 O O20 8NP . . . B 2 10.426 -11.594 -0.641 1 30.45 ? O20 8NP 501 A 1 HETATM 21 O O21 8NP . . . B 2 14.695 -12.012 3.918 1 48.11 ? O21 8NP 501 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #