data_5UWB # _model_server_result.job_id t7TvT2JDw3TOThNl4sJVLw _model_server_result.datetime_utc '2025-03-04 08:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5UWB # _exptl.entry_id 5UWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 691.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 5UWB _cell.length_a 79.868 _cell.length_b 40.883 _cell.length_c 82.399 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 76 B ILE 76 1_555 A N MSE 77 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 77 B MSE 77 1_555 A N THR 78 B THR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C GLN 89 B GLN 89 1_555 A N MSE 90 B MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 90 B MSE 90 1_555 A N GLN 91 B GLN 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C LEU 101 B LEU 101 1_555 A N MSE 102 B MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 102 B MSE 102 1_555 A N GLN 103 B GLN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C GLY 133 B GLY 133 1_555 A N MSE 134 B MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 134 B MSE 134 1_555 A N LYS 135 B LYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C ALA 180 B ALA 180 1_555 A N MSE 181 B MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 181 B MSE 181 1_555 A N GLN 182 B GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C ILE 76 A ILE 76 1_555 B N MSE 77 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C MSE 77 A MSE 77 1_555 B N THR 78 A THR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C GLN 89 A GLN 89 1_555 B N MSE 90 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 90 A MSE 90 1_555 B N GLN 91 A GLN 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 B C LEU 101 A LEU 101 1_555 B N MSE 102 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 102 A MSE 102 1_555 B N GLN 103 A GLN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C GLY 133 A GLY 133 1_555 B N MSE 134 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 134 A MSE 134 1_555 B N LYS 135 A LYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C ALA 180 A ALA 180 1_555 B N MSE 181 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 181 A MSE 181 1_555 B N GLN 182 A GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 224 n n C2 C3 PEF sing 225 n n C2 O2 PEF sing 226 n n C2 H21 PEF sing 227 n n C1 O3P PEF sing 228 n n C1 H11 PEF sing 229 n n C1 H12 PEF sing 230 n n N C5 PEF sing 231 n n N HN1 PEF sing 232 n n N HN2 PEF sing 233 n n C3 O3 PEF sing 234 n n C3 H31 PEF sing 235 n n C3 H32 PEF sing 236 n n C4 C5 PEF sing 237 n n C4 O4P PEF sing 238 n n C4 H41 PEF sing 239 n n C4 H42 PEF sing 240 n n C5 H51 PEF sing 241 n n C5 H52 PEF sing 242 n n C10 C11 PEF sing 243 n n C10 O4 PEF doub 244 n n C10 O2 PEF sing 245 n n C11 C12 PEF sing 246 n n C11 H112 PEF sing 247 n n C11 H111 PEF sing 248 n n C12 C13 PEF sing 249 n n C12 H122 PEF sing 250 n n C12 H121 PEF sing 251 n n C13 C14 PEF sing 252 n n C13 H132 PEF sing 253 n n C13 H131 PEF sing 254 n n C14 C15 PEF sing 255 n n C14 H142 PEF sing 256 n n C14 H141 PEF sing 257 n n C15 C16 PEF sing 258 n n C15 H152 PEF sing 259 n n C15 H151 PEF sing 260 n n C16 C17 PEF sing 261 n n C16 H162 PEF sing 262 n n C16 H161 PEF sing 263 n n C17 C18 PEF sing 264 n n C17 H172 PEF sing 265 n n C17 H171 PEF sing 266 n n C18 C19 PEF sing 267 n n C18 H182 PEF sing 268 n n C18 H181 PEF sing 269 n n C19 C20 PEF sing 270 n n C19 H192 PEF sing 271 n n C19 H191 PEF sing 272 n n C20 C21 PEF sing 273 n n C20 H202 PEF sing 274 n n C20 H201 PEF sing 275 n n C21 C22 PEF sing 276 n n C21 H212 PEF sing 277 n n C21 H211 PEF sing 278 n n C22 C23 PEF sing 279 n n C22 H222 PEF sing 280 n n C22 H221 PEF sing 281 n n C23 C24 PEF sing 282 n n C23 H232 PEF sing 283 n n C23 H231 PEF sing 284 n n C24 C25 PEF sing 285 n n C24 H242 PEF sing 286 n n C24 H241 PEF sing 287 n n C25 H252 PEF sing 288 n n C25 H251 PEF sing 289 n n C25 H253 PEF sing 290 n n C30 C31 PEF sing 291 n n C30 O5 PEF doub 292 n n C30 O3 PEF sing 293 n n C31 C32 PEF sing 294 n n C31 H312 PEF sing 295 n n C31 H311 PEF sing 296 n n C32 C33 PEF sing 297 n n C32 H322 PEF sing 298 n n C32 H321 PEF sing 299 n n C33 C34 PEF sing 300 n n C33 H332 PEF sing 301 n n C33 H331 PEF sing 302 n n C34 C35 PEF sing 303 n n C34 H342 PEF sing 304 n n C34 H341 PEF sing 305 n n C35 C36 PEF sing 306 n n C35 H352 PEF sing 307 n n C35 H351 PEF sing 308 n n C36 C37 PEF sing 309 n n C36 H362 PEF sing 310 n n C36 H361 PEF sing 311 n n C37 C38 PEF sing 312 n n C37 H372 PEF sing 313 n n C37 H371 PEF sing 314 n n C38 C39 PEF sing 315 n n C38 H382 PEF sing 316 n n C38 H381 PEF sing 317 n n C39 C40 PEF sing 318 n n C39 H392 PEF sing 319 n n C39 H391 PEF sing 320 n n C40 C41 PEF sing 321 n n C40 H402 PEF sing 322 n n C40 H401 PEF sing 323 n n C41 C42 PEF sing 324 n n C41 H412 PEF sing 325 n n C41 H411 PEF sing 326 n n C42 C43 PEF sing 327 n n C42 H422 PEF sing 328 n n C42 H421 PEF sing 329 n n C43 C44 PEF sing 330 n n C43 H432 PEF sing 331 n n C43 H431 PEF sing 332 n n C44 C45 PEF sing 333 n n C44 H442 PEF sing 334 n n C44 H441 PEF sing 335 n n C45 H452 PEF sing 336 n n C45 H451 PEF sing 337 n n C45 H453 PEF sing 338 n n O1P P PEF doub 339 n n O2P P PEF sing 340 n n O2P HOP2 PEF sing 341 n n O3P P PEF sing 342 n n O4P P PEF sing 343 n n # _atom_sites.entry_id 5UWB _atom_sites.fract_transf_matrix[1][1] 0.012521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003706 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEF B 1 301 1 PEF PEF . D 2 PEF B 1 302 2 PEF PEF . E 2 PEF A 1 301 3 PEF PEF . F 2 PEF A 1 302 4 PEF PEF . G 3 HOH B 1 401 4 HOH HOH . G 3 HOH B 2 402 3 HOH HOH . H 3 HOH A 1 401 1 HOH HOH . H 3 HOH A 2 402 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . . . F 2 12.523 -2.022 40.16 1 74.1 ? C2 PEF 302 A 1 HETATM 2 C C1 PEF . . . F 2 11.753 -0.851 40.76 1 86.81 ? C1 PEF 302 A 1 HETATM 3 C C3 PEF . . . F 2 11.812 -3.319 40.53 1 77.27 ? C3 PEF 302 A 1 HETATM 4 C C10 PEF . . . F 2 13.408 -0.781 38.267 1 80.05 ? C10 PEF 302 A 1 HETATM 5 C C11 PEF . . . F 2 14.728 -0.991 37.562 1 65.62 ? C11 PEF 302 A 1 HETATM 6 C C12 PEF . . . F 2 14.642 -2.138 36.562 1 59.25 ? C12 PEF 302 A 1 HETATM 7 C C13 PEF . . . F 2 16.028 -2.444 36.005 1 56.61 ? C13 PEF 302 A 1 HETATM 8 C C14 PEF . . . F 2 16.115 -3.861 35.454 1 50.03 ? C14 PEF 302 A 1 HETATM 9 C C15 PEF . . . F 2 17.571 -4.297 35.353 1 47.62 ? C15 PEF 302 A 1 HETATM 10 C C16 PEF . . . F 2 17.699 -5.607 34.588 1 45.47 ? C16 PEF 302 A 1 HETATM 11 C C17 PEF . . . F 2 19.15 -6.063 34.553 1 41.82 ? C17 PEF 302 A 1 HETATM 12 C C18 PEF . . . F 2 19.268 -7.445 33.931 1 38.88 ? C18 PEF 302 A 1 HETATM 13 C C19 PEF . . . F 2 19.654 -7.36 32.459 1 29.07 ? C19 PEF 302 A 1 HETATM 14 C C20 PEF . . . F 2 19.535 -8.721 31.782 1 35.07 ? C20 PEF 302 A 1 HETATM 15 C C21 PEF . . . F 2 20.639 -9.67 32.233 1 35.23 ? C21 PEF 302 A 1 HETATM 16 C C22 PEF . . . F 2 20.246 -11.123 31.991 1 38.35 ? C22 PEF 302 A 1 HETATM 17 C C23 PEF . . . F 2 20.447 -11.545 30.542 1 51.41 ? C23 PEF 302 A 1 HETATM 18 C C24 PEF . . . F 2 21.916 -11.799 30.237 1 40.82 ? C24 PEF 302 A 1 HETATM 19 C C25 PEF . . . F 2 22.368 -13.154 30.723 1 46.48 ? C25 PEF 302 A 1 HETATM 20 C C30 PEF . . . F 2 12.074 -5.768 40.078 1 66.32 ? C30 PEF 302 A 1 HETATM 21 C C31 PEF . . . F 2 12.776 -6.806 39.239 1 46.09 ? C31 PEF 302 A 1 HETATM 22 C C32 PEF . . . F 2 13.145 -6.195 37.892 1 39.82 ? C32 PEF 302 A 1 HETATM 23 C C33 PEF . . . F 2 14.174 -7.048 37.166 1 42.87 ? C33 PEF 302 A 1 HETATM 24 C C34 PEF . . . F 2 13.602 -8.414 36.816 1 39.6 ? C34 PEF 302 A 1 HETATM 25 C C35 PEF . . . F 2 14.512 -9.147 35.841 1 47.2 ? C35 PEF 302 A 1 HETATM 26 C C36 PEF . . . F 2 14.249 -8.685 34.412 1 53.41 ? C36 PEF 302 A 1 HETATM 27 C C37 PEF . . . F 2 15.288 -9.229 33.443 1 40.41 ? C37 PEF 302 A 1 HETATM 28 C C38 PEF . . . F 2 15.098 -10.725 33.262 1 36.34 ? C38 PEF 302 A 1 HETATM 29 C C39 PEF . . . F 2 16.112 -11.297 32.283 1 45.51 ? C39 PEF 302 A 1 HETATM 30 C C40 PEF . . . F 2 15.667 -11.142 30.833 1 47.5 ? C40 PEF 302 A 1 HETATM 31 C C41 PEF . . . F 2 16.116 -12.323 29.975 1 46.84 ? C41 PEF 302 A 1 HETATM 32 C C42 PEF . . . F 2 15.437 -13.622 30.407 1 44.48 ? C42 PEF 302 A 1 HETATM 33 C C43 PEF . . . F 2 15.458 -14.666 29.297 1 41.6 ? C43 PEF 302 A 1 HETATM 34 C C44 PEF . . . F 2 14.885 -15.991 29.789 1 39.55 ? C44 PEF 302 A 1 HETATM 35 C C45 PEF . . . F 2 13.375 -15.946 29.884 1 45.93 ? C45 PEF 302 A 1 HETATM 36 O O4 PEF . . . F 2 12.993 0.356 38.43 1 80.77 ? O4 PEF 302 A 1 HETATM 37 O O5 PEF . . . F 2 11.066 -6.044 40.708 1 71.6 ? O5 PEF 302 A 1 HETATM 38 O O2 PEF . . . F 2 12.614 -1.916 38.734 1 76.6 ? O2 PEF 302 A 1 HETATM 39 O O3 PEF . . . F 2 12.621 -4.422 40.138 1 77.8 ? O3 PEF 302 A 1 HETATM 40 O O1P PEF . . . F 2 11.759 2.215 40.432 1 79.22 ? O1P PEF 302 A 1 HETATM 41 O O2P PEF . . . F 2 11.596 1.609 42.977 1 78.24 ? O2P PEF 302 A 1 HETATM 42 O O3P PEF . . . F 2 12.709 0.045 41.32 1 102.75 ? O3P PEF 302 A 1 HETATM 43 O O4P PEF . . . F 2 13.819 2.18 41.893 1 57.88 ? O4P PEF 302 A 1 HETATM 44 P P PEF . . . F 2 12.348 1.573 41.667 1 100.44 ? P PEF 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #