data_5UWC # _model_server_result.job_id eVPYTAMlN-XgjY3UgcZqwQ _model_server_result.datetime_utc '2024-10-10 23:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 5UWC # _exptl.entry_id 5UWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UWC _cell.length_a 106.461 _cell.length_b 106.461 _cell.length_c 96.116 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG C 401 NAG 3 n C NAG 2 A 2 NAG C 402 NAG 3 n C FUL 3 A 3 FUL C 400 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 G CYS 52 1_555 A SG CYS 49 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? disulf ? disulf2 A SG CYS 57 G CYS 76 1_555 A SG CYS 176 G CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? disulf ? disulf3 A SG CYS 93 G CYS 112 1_555 A SG CYS 103 G CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? disulf ? disulf4 A SG CYS 132 G CYS 151 1_555 A SG CYS 146 G CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 sing covale ? covale2 C O6 NAG . A NAG 1 1_555 C C1 FUL . A FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5UWC _atom_sites.fract_transf_matrix[1][1] 0.009393 _atom_sites.fract_transf_matrix[1][2] 0.005423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG G 1 401 500 NAG NAG . E 5 CIT G 1 402 1 CIT CIT . F 6 IMD G 1 406 1 IMD IMD . G 7 EDT G 1 407 1 EDT EDT . H 5 CIT I 1 201 2 CIT CIT . I 8 HOH G 1 501 27 HOH HOH . I 8 HOH G 2 502 17 HOH HOH . I 8 HOH G 3 503 47 HOH HOH . I 8 HOH G 4 504 16 HOH HOH . I 8 HOH G 5 505 4 HOH HOH . I 8 HOH G 6 506 19 HOH HOH . I 8 HOH G 7 507 3 HOH HOH . I 8 HOH G 8 508 52 HOH HOH . I 8 HOH G 9 509 40 HOH HOH . I 8 HOH G 10 510 2 HOH HOH . I 8 HOH G 11 511 41 HOH HOH . I 8 HOH G 12 512 60 HOH HOH . I 8 HOH G 13 513 23 HOH HOH . I 8 HOH G 14 514 56 HOH HOH . I 8 HOH G 15 515 20 HOH HOH . I 8 HOH G 16 516 14 HOH HOH . I 8 HOH G 17 517 37 HOH HOH . I 8 HOH G 18 518 8 HOH HOH . I 8 HOH G 19 519 50 HOH HOH . I 8 HOH G 20 520 5 HOH HOH . I 8 HOH G 21 521 35 HOH HOH . I 8 HOH G 22 522 51 HOH HOH . I 8 HOH G 23 523 36 HOH HOH . I 8 HOH G 24 524 7 HOH HOH . I 8 HOH G 25 525 6 HOH HOH . I 8 HOH G 26 526 10 HOH HOH . I 8 HOH G 27 527 58 HOH HOH . I 8 HOH G 28 528 2 HOH HOH . I 8 HOH G 29 529 11 HOH HOH . I 8 HOH G 30 530 42 HOH HOH . I 8 HOH G 31 531 38 HOH HOH . I 8 HOH G 32 532 24 HOH HOH . I 8 HOH G 33 533 18 HOH HOH . I 8 HOH G 34 534 12 HOH HOH . I 8 HOH G 35 535 45 HOH HOH . I 8 HOH G 36 536 15 HOH HOH . I 8 HOH G 37 537 48 HOH HOH . I 8 HOH G 38 538 53 HOH HOH . I 8 HOH G 39 539 1 HOH HOH . I 8 HOH G 40 540 6 HOH HOH . I 8 HOH G 41 541 49 HOH HOH . I 8 HOH G 42 542 43 HOH HOH . I 8 HOH G 43 543 5 HOH HOH . I 8 HOH G 44 544 7 HOH HOH . I 8 HOH G 45 545 46 HOH HOH . I 8 HOH G 46 546 59 HOH HOH . I 8 HOH G 47 547 55 HOH HOH . I 8 HOH G 48 548 8 HOH HOH . I 8 HOH G 49 549 25 HOH HOH . I 8 HOH G 50 550 4 HOH HOH . I 8 HOH G 51 551 34 HOH HOH . I 8 HOH G 52 552 22 HOH HOH . I 8 HOH G 53 553 39 HOH HOH . I 8 HOH G 54 554 13 HOH HOH . J 8 HOH I 1 301 21 HOH HOH . J 8 HOH I 2 302 1 HOH HOH . J 8 HOH I 3 303 44 HOH HOH . J 8 HOH I 4 304 30 HOH HOH . J 8 HOH I 5 305 57 HOH HOH . J 8 HOH I 6 306 28 HOH HOH . J 8 HOH I 7 307 32 HOH HOH . J 8 HOH I 8 308 31 HOH HOH . J 8 HOH I 9 309 54 HOH HOH . J 8 HOH I 10 310 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 5 98.137 69.301 10.197 1 86.35 ? C1 CIT 201 I 1 HETATM 2 O O1 CIT . . . H 5 99.237 68.888 9.767 1 85.99 ? O1 CIT 201 I 1 HETATM 3 O O2 CIT . . . H 5 97.774 70.497 10.079 1 84.01 ? O2 CIT 201 I 1 HETATM 4 C C2 CIT . . . H 5 97.226 68.281 10.853 1 85.83 ? C2 CIT 201 I 1 HETATM 5 C C3 CIT . . . H 5 96.251 68.824 11.886 1 85.67 ? C3 CIT 201 I 1 HETATM 6 O O7 CIT . . . H 5 95.349 69.727 11.234 1 84.87 ? O7 CIT 201 I 1 HETATM 7 C C4 CIT . . . H 5 95.45 67.639 12.425 1 86.82 ? C4 CIT 201 I 1 HETATM 8 C C5 CIT . . . H 5 95.703 67.156 13.83 1 85.46 ? C5 CIT 201 I 1 HETATM 9 O O3 CIT . . . H 5 96.132 65.992 13.976 1 86.56 ? O3 CIT 201 I 1 HETATM 10 O O4 CIT . . . H 5 95.443 67.932 14.776 1 86.07 ? O4 CIT 201 I 1 HETATM 11 C C6 CIT . . . H 5 96.949 69.571 12.984 1 86.34 ? C6 CIT 201 I 1 HETATM 12 O O5 CIT . . . H 5 98 69.073 13.404 1 88.69 ? O5 CIT 201 I 1 HETATM 13 O O6 CIT . . . H 5 96.446 70.622 13.444 1 84.89 ? O6 CIT 201 I 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #