data_5UWC # _model_server_result.job_id feg2KkdujlVQwmjSz1UA6g _model_server_result.datetime_utc '2024-10-10 23:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5UWC # _exptl.entry_id 5UWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UWC _cell.length_a 106.461 _cell.length_b 106.461 _cell.length_c 96.116 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG C 401 NAG 3 n C NAG 2 A 2 NAG C 402 NAG 3 n C FUL 3 A 3 FUL C 400 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 G CYS 52 1_555 A SG CYS 49 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? disulf ? disulf2 A SG CYS 57 G CYS 76 1_555 A SG CYS 176 G CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? disulf ? disulf3 A SG CYS 93 G CYS 112 1_555 A SG CYS 103 G CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? disulf ? disulf4 A SG CYS 132 G CYS 151 1_555 A SG CYS 146 G CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 sing covale ? covale2 C O6 NAG . A NAG 1 1_555 C C1 FUL . A FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 325 n n C1 O1 NAG sing 326 n n C1 O5 NAG sing 327 n n C1 H1 NAG sing 328 n n C2 C3 NAG sing 329 n n C2 N2 NAG sing 330 n n C2 H2 NAG sing 331 n n C3 C4 NAG sing 332 n n C3 O3 NAG sing 333 n n C3 H3 NAG sing 334 n n C4 C5 NAG sing 335 n n C4 O4 NAG sing 336 n n C4 H4 NAG sing 337 n n C5 C6 NAG sing 338 n n C5 O5 NAG sing 339 n n C5 H5 NAG sing 340 n n C6 O6 NAG sing 341 n n C6 H61 NAG sing 342 n n C6 H62 NAG sing 343 n n C7 C8 NAG sing 344 n n C7 N2 NAG sing 345 n n C7 O7 NAG doub 346 n n C8 H81 NAG sing 347 n n C8 H82 NAG sing 348 n n C8 H83 NAG sing 349 n n N2 HN2 NAG sing 350 n n O1 HO1 NAG sing 351 n n O3 HO3 NAG sing 352 n n O4 HO4 NAG sing 353 n n O6 HO6 NAG sing 354 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5UWC _atom_sites.fract_transf_matrix[1][1] 0.009393 _atom_sites.fract_transf_matrix[1][2] 0.005423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG G 1 401 500 NAG NAG . E 5 CIT G 1 402 1 CIT CIT . F 6 IMD G 1 406 1 IMD IMD . G 7 EDT G 1 407 1 EDT EDT . H 5 CIT I 1 201 2 CIT CIT . I 8 HOH G 1 501 27 HOH HOH . I 8 HOH G 2 502 17 HOH HOH . I 8 HOH G 3 503 47 HOH HOH . I 8 HOH G 4 504 16 HOH HOH . I 8 HOH G 5 505 4 HOH HOH . I 8 HOH G 6 506 19 HOH HOH . I 8 HOH G 7 507 3 HOH HOH . I 8 HOH G 8 508 52 HOH HOH . I 8 HOH G 9 509 40 HOH HOH . I 8 HOH G 10 510 2 HOH HOH . I 8 HOH G 11 511 41 HOH HOH . I 8 HOH G 12 512 60 HOH HOH . I 8 HOH G 13 513 23 HOH HOH . I 8 HOH G 14 514 56 HOH HOH . I 8 HOH G 15 515 20 HOH HOH . I 8 HOH G 16 516 14 HOH HOH . I 8 HOH G 17 517 37 HOH HOH . I 8 HOH G 18 518 8 HOH HOH . I 8 HOH G 19 519 50 HOH HOH . I 8 HOH G 20 520 5 HOH HOH . I 8 HOH G 21 521 35 HOH HOH . I 8 HOH G 22 522 51 HOH HOH . I 8 HOH G 23 523 36 HOH HOH . I 8 HOH G 24 524 7 HOH HOH . I 8 HOH G 25 525 6 HOH HOH . I 8 HOH G 26 526 10 HOH HOH . I 8 HOH G 27 527 58 HOH HOH . I 8 HOH G 28 528 2 HOH HOH . I 8 HOH G 29 529 11 HOH HOH . I 8 HOH G 30 530 42 HOH HOH . I 8 HOH G 31 531 38 HOH HOH . I 8 HOH G 32 532 24 HOH HOH . I 8 HOH G 33 533 18 HOH HOH . I 8 HOH G 34 534 12 HOH HOH . I 8 HOH G 35 535 45 HOH HOH . I 8 HOH G 36 536 15 HOH HOH . I 8 HOH G 37 537 48 HOH HOH . I 8 HOH G 38 538 53 HOH HOH . I 8 HOH G 39 539 1 HOH HOH . I 8 HOH G 40 540 6 HOH HOH . I 8 HOH G 41 541 49 HOH HOH . I 8 HOH G 42 542 43 HOH HOH . I 8 HOH G 43 543 5 HOH HOH . I 8 HOH G 44 544 7 HOH HOH . I 8 HOH G 45 545 46 HOH HOH . I 8 HOH G 46 546 59 HOH HOH . I 8 HOH G 47 547 55 HOH HOH . I 8 HOH G 48 548 8 HOH HOH . I 8 HOH G 49 549 25 HOH HOH . I 8 HOH G 50 550 4 HOH HOH . I 8 HOH G 51 551 34 HOH HOH . I 8 HOH G 52 552 22 HOH HOH . I 8 HOH G 53 553 39 HOH HOH . I 8 HOH G 54 554 13 HOH HOH . J 8 HOH I 1 301 21 HOH HOH . J 8 HOH I 2 302 1 HOH HOH . J 8 HOH I 3 303 44 HOH HOH . J 8 HOH I 4 304 30 HOH HOH . J 8 HOH I 5 305 57 HOH HOH . J 8 HOH I 6 306 28 HOH HOH . J 8 HOH I 7 307 32 HOH HOH . J 8 HOH I 8 308 31 HOH HOH . J 8 HOH I 9 309 54 HOH HOH . J 8 HOH I 10 310 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 77.55 93.561 23.618 0.5 63.09 ? C1 NAG 401 G 1 HETATM 2 C C2 NAG . . . D 4 77.732 93.195 25.085 0.5 65.58 ? C2 NAG 401 G 1 HETATM 3 C C3 NAG . . . D 4 77.873 91.677 25.189 0.5 64.74 ? C3 NAG 401 G 1 HETATM 4 C C4 NAG . . . D 4 76.588 91.066 24.652 0.5 63.66 ? C4 NAG 401 G 1 HETATM 5 C C5 NAG . . . D 4 76.51 91.438 23.18 0.5 61.23 ? C5 NAG 401 G 1 HETATM 6 C C6 NAG . . . D 4 75.33 90.758 22.494 0.5 60.35 ? C6 NAG 401 G 1 HETATM 7 C C7 NAG . . . D 4 78.918 94.058 27.003 0.5 68.36 ? C7 NAG 401 G 1 HETATM 8 C C8 NAG . . . D 4 80.096 93.462 27.707 0.5 69.01 ? C8 NAG 401 G 1 HETATM 9 N N2 NAG . . . D 4 78.86 93.883 25.689 0.5 66.47 ? N2 NAG 401 G 1 HETATM 10 O O3 NAG . . . D 4 78.152 91.234 26.526 0.5 67.26 ? O3 NAG 401 G 1 HETATM 11 O O4 NAG . . . D 4 76.569 89.648 24.848 0.5 62.83 ? O4 NAG 401 G 1 HETATM 12 O O5 NAG . . . D 4 76.427 92.862 23.073 0.5 62.18 ? O5 NAG 401 G 1 HETATM 13 O O6 NAG . . . D 4 75.363 90.973 21.079 0.5 58.14 ? O6 NAG 401 G 1 HETATM 14 O O7 NAG . . . D 4 78.052 94.661 27.603 0.5 69.58 ? O7 NAG 401 G 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #