data_5UX4 # _model_server_result.job_id s4p7uaQFkCM66WyBNUrN6Q _model_server_result.datetime_utc '2024-12-22 01:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ux4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 5UX4 # _exptl.entry_id 5UX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.422 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro-7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3-c]pyridine-5,4'-[1,3]oxazol]-2'-amine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.53 _cell.angle_gamma 90 _cell.entry_id 5UX4 _cell.length_a 136.514 _cell.length_b 66.122 _cell.length_c 99.555 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 101 NAG 2 n C NAG 2 C 2 NAG D 102 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 90 A CYS 27 1_555 A SG CYS 159 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 109 A CYS 46 1_555 A SG CYS 116 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 280 A CYS 217 1_555 A SG CYS 284 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 323 A CYS 260 1_555 A SG CYS 360 A CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 90 B CYS 27 1_555 B SG CYS 159 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 109 B CYS 46 1_555 B SG CYS 116 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 280 B CYS 217 1_555 B SG CYS 284 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 323 B CYS 260 1_555 B SG CYS 360 B CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 133 A ASN 70 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 257 A ASN 194 1_555 D C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 133 B ASN 70 1_555 F C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B ND2 ASN 257 B ASN 194 1_555 G C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C24 H18 F2 N4 O3' _chem_comp.formula_weight 448.422 _chem_comp.id 3UT _chem_comp.mon_nstd_flag . _chem_comp.name "(5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro-7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3-c]pyridine-5,4'-[1,3]oxazol]-2'-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N23 C24 3UT doub 1 n y N23 C22 3UT sing 2 n y C24 C25 3UT sing 3 n y F27 C22 3UT sing 4 n n C22 C21 3UT doub 5 n y C25 C26 3UT doub 6 n y C21 C26 3UT sing 7 n y C21 C1 3UT sing 8 n n N19 C17 3UT sing 9 n n C1 C6 3UT doub 10 n y C1 C2 3UT sing 11 n y C17 N18 3UT doub 12 n n C17 O16 3UT sing 13 n n C6 C5 3UT sing 14 n y N18 C10 3UT sing 15 n n C2 C3 3UT doub 16 n y O16 C15 3UT sing 17 n n C5 C10 3UT sing 18 n n C5 C4 3UT doub 19 n y C3 C4 3UT sing 20 n y C10 C15 3UT sing 21 n n C10 C9 3UT sing 22 n n C4 O7 3UT sing 23 n n C9 C14 3UT doub 24 n y C9 C8 3UT sing 25 n y O7 C8 3UT sing 26 n n C14 C13 3UT sing 27 n y C8 C11 3UT doub 28 n y C13 C20 3UT sing 29 n n C13 N12 3UT doub 30 n y C28 C20 3UT sing 31 n n C28 O29 3UT sing 32 n n C11 N12 3UT sing 33 n y C11 F33 3UT sing 34 n n C20 C32 3UT doub 35 n n O29 C30 3UT sing 36 n n C30 C31 3UT sing 37 n n C32 C31 3UT sing 38 n n C28 H1 3UT sing 39 n n C28 H2 3UT sing 40 n n C30 H3 3UT sing 41 n n C30 H4 3UT sing 42 n n C31 H5 3UT sing 43 n n C31 H6 3UT sing 44 n n C32 H7 3UT sing 45 n n C14 H8 3UT sing 46 n n C15 H9 3UT sing 47 n n C15 H10 3UT sing 48 n n N19 H11 3UT sing 49 n n N19 H12 3UT sing 50 n n C6 H13 3UT sing 51 n n C3 H14 3UT sing 52 n n C2 H15 3UT sing 53 n n C26 H16 3UT sing 54 n n C25 H17 3UT sing 55 n n C24 H18 3UT sing 56 n n # _atom_sites.entry_id 5UX4 _atom_sites.fract_transf_matrix[1][1] 0.007325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 403 201 NAG NAG . E 4 3UT A 1 404 501 3UT UNL . F 3 NAG B 1 401 101 NAG NAG . G 3 NAG B 1 402 201 NAG NAG . H 4 3UT B 1 403 502 3UT UNL . I 5 HOH A 1 501 26 HOH HOH . I 5 HOH A 2 502 10 HOH HOH . I 5 HOH A 3 503 1 HOH HOH . I 5 HOH A 4 504 3 HOH HOH . I 5 HOH A 5 505 25 HOH HOH . I 5 HOH A 6 506 9 HOH HOH . I 5 HOH A 7 507 24 HOH HOH . I 5 HOH A 8 508 14 HOH HOH . I 5 HOH A 9 509 21 HOH HOH . I 5 HOH A 10 510 6 HOH HOH . I 5 HOH A 11 511 2 HOH HOH . I 5 HOH A 12 512 16 HOH HOH . I 5 HOH A 13 513 17 HOH HOH . I 5 HOH A 14 514 7 HOH HOH . J 5 HOH B 1 501 4 HOH HOH . J 5 HOH B 2 502 12 HOH HOH . J 5 HOH B 3 503 8 HOH HOH . J 5 HOH B 4 504 5 HOH HOH . J 5 HOH B 5 505 19 HOH HOH . J 5 HOH B 6 506 11 HOH HOH . J 5 HOH B 7 507 20 HOH HOH . J 5 HOH B 8 508 23 HOH HOH . J 5 HOH B 9 509 13 HOH HOH . J 5 HOH B 10 510 22 HOH HOH . J 5 HOH B 11 511 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 3UT . . . H 4 41.165 2.975 17.967 1 35.4 ? C28 3UT 403 B 1 HETATM 2 O O29 3UT . . . H 4 40.287 1.73 18.387 1 44.7 ? O29 3UT 403 B 1 HETATM 3 C C30 3UT . . . H 4 40.38 0.771 17.53 1 39.31 ? C30 3UT 403 B 1 HETATM 4 C C31 3UT . . . H 4 39.872 1.12 16.015 1 29.05 ? C31 3UT 403 B 1 HETATM 5 C C32 3UT . . . H 4 40.329 2.344 15.602 1 48.13 ? C32 3UT 403 B 1 HETATM 6 C C20 3UT . . . H 4 41.163 3.212 16.537 1 35.21 ? C20 3UT 403 B 1 HETATM 7 C C13 3UT . . . H 4 41.714 4.486 15.948 1 38.99 ? C13 3UT 403 B 1 HETATM 8 C C14 3UT . . . H 4 41.975 5.596 16.739 1 40.54 ? C14 3UT 403 B 1 HETATM 9 N N12 3UT . . . H 4 41.908 4.496 14.651 1 46.91 ? N12 3UT 403 B 1 HETATM 10 C C11 3UT . . . H 4 42.378 5.552 14.008 1 39.81 ? C11 3UT 403 B 1 HETATM 11 F F33 3UT . . . H 4 42.591 5.555 12.641 1 58.73 ? F33 3UT 403 B 1 HETATM 12 C C8 3UT . . . H 4 42.678 6.725 14.77 1 41.11 ? C8 3UT 403 B 1 HETATM 13 O O7 3UT . . . H 4 43.187 7.844 14.006 1 39.15 ? O7 3UT 403 B 1 HETATM 14 C C9 3UT . . . H 4 42.478 6.766 16.136 1 40.53 ? C9 3UT 403 B 1 HETATM 15 C C10 3UT . . . H 4 42.819 8.023 16.979 1 44.3 ? C10 3UT 403 B 1 HETATM 16 C C15 3UT . . . H 4 41.57 8.597 17.629 1 47.78 ? C15 3UT 403 B 1 HETATM 17 O O16 3UT . . . H 4 41.655 8.428 19.057 1 47.56 ? O16 3UT 403 B 1 HETATM 18 C C17 3UT . . . H 4 42.941 7.762 19.317 1 40.6 ? C17 3UT 403 B 1 HETATM 19 N N18 3UT . . . H 4 43.591 7.596 18.005 1 46.43 ? N18 3UT 403 B 1 HETATM 20 N N19 3UT . . . H 4 43.532 7.363 20.594 1 30.57 ? N19 3UT 403 B 1 HETATM 21 C C5 3UT . . . H 4 43.541 9.022 16.161 1 45.78 ? C5 3UT 403 B 1 HETATM 22 C C6 3UT . . . H 4 44.07 10.075 16.881 1 36.2 ? C6 3UT 403 B 1 HETATM 23 C C4 3UT . . . H 4 43.718 8.93 14.798 1 43.14 ? C4 3UT 403 B 1 HETATM 24 C C3 3UT . . . H 4 44.453 9.905 14.094 1 44.33 ? C3 3UT 403 B 1 HETATM 25 C C2 3UT . . . H 4 44.977 10.948 14.812 1 31.44 ? C2 3UT 403 B 1 HETATM 26 C C1 3UT . . . H 4 44.798 11.047 16.19 1 39.17 ? C1 3UT 403 B 1 HETATM 27 C C21 3UT . . . H 4 45.361 12.128 16.828 1 35.78 ? C21 3UT 403 B 1 HETATM 28 C C26 3UT . . . H 4 44.942 13.401 16.508 1 26.13 ? C26 3UT 403 B 1 HETATM 29 C C25 3UT . . . H 4 45.534 14.47 17.131 1 36.13 ? C25 3UT 403 B 1 HETATM 30 C C24 3UT . . . H 4 46.535 14.209 18.047 1 32.83 ? C24 3UT 403 B 1 HETATM 31 N N23 3UT . . . H 4 46.925 12.978 18.326 1 32.51 ? N23 3UT 403 B 1 HETATM 32 C C22 3UT . . . H 4 46.372 11.942 17.737 1 32.45 ? C22 3UT 403 B 1 HETATM 33 F F27 3UT . . . H 4 46.779 10.672 18.037 1 40.07 ? F27 3UT 403 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #