data_5UX5 # _model_server_result.job_id nSIOBT0WjrjAWXkwNCA8tA _model_server_result.datetime_utc '2025-02-10 22:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ux5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":2002}' # _entry.id 5UX5 # _exptl.entry_id 5UX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.48 _cell.angle_beta 89.68 _cell.angle_gamma 83.42 _cell.entry_id 5UX5 _cell.length_a 84.959 _cell.length_b 116.36 _cell.length_c 140.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 326 n n PA O2A NAD sing 327 n n PA O5B NAD sing 328 n n PA O3 NAD sing 329 n n O2A HOA2 NAD sing 330 n n O5B C5B NAD sing 331 n n C5B C4B NAD sing 332 n n C5B H51A NAD sing 333 n n C5B H52A NAD sing 334 n n C4B O4B NAD sing 335 n n C4B C3B NAD sing 336 n n C4B H4B NAD sing 337 n n O4B C1B NAD sing 338 n n C3B O3B NAD sing 339 n n C3B C2B NAD sing 340 n n C3B H3B NAD sing 341 n n O3B HO3A NAD sing 342 n n C2B O2B NAD sing 343 n n C2B C1B NAD sing 344 n n C2B H2B NAD sing 345 n n O2B HO2A NAD sing 346 n n C1B N9A NAD sing 347 n n C1B H1B NAD sing 348 n n N9A C8A NAD sing 349 n y N9A C4A NAD sing 350 n y C8A N7A NAD doub 351 n y C8A H8A NAD sing 352 n n N7A C5A NAD sing 353 n y C5A C6A NAD sing 354 n y C5A C4A NAD doub 355 n y C6A N6A NAD sing 356 n n C6A N1A NAD doub 357 n y N6A H61A NAD sing 358 n n N6A H62A NAD sing 359 n n N1A C2A NAD sing 360 n y C2A N3A NAD doub 361 n y C2A H2A NAD sing 362 n n N3A C4A NAD sing 363 n y O3 PN NAD sing 364 n n PN O1N NAD doub 365 n n PN O2N NAD sing 366 n n PN O5D NAD sing 367 n n O5D C5D NAD sing 368 n n C5D C4D NAD sing 369 n n C5D H51N NAD sing 370 n n C5D H52N NAD sing 371 n n C4D O4D NAD sing 372 n n C4D C3D NAD sing 373 n n C4D H4D NAD sing 374 n n O4D C1D NAD sing 375 n n C3D O3D NAD sing 376 n n C3D C2D NAD sing 377 n n C3D H3D NAD sing 378 n n O3D HO3N NAD sing 379 n n C2D O2D NAD sing 380 n n C2D C1D NAD sing 381 n n C2D H2D NAD sing 382 n n O2D HO2N NAD sing 383 n n C1D N1N NAD sing 384 n n C1D H1D NAD sing 385 n n N1N C2N NAD sing 386 n y N1N C6N NAD doub 387 n y C2N C3N NAD doub 388 n y C2N H2N NAD sing 389 n n C3N C7N NAD sing 390 n n C3N C4N NAD sing 391 n y C7N O7N NAD doub 392 n n C7N N7N NAD sing 393 n n N7N H71N NAD sing 394 n n N7N H72N NAD sing 395 n n C4N C5N NAD doub 396 n y C4N H4N NAD sing 397 n n C5N C6N NAD sing 398 n y C5N H5N NAD sing 399 n n C6N H6N NAD sing 400 n n # _atom_sites.entry_id 5UX5 _atom_sites.fract_transf_matrix[1][1] 0.01177 _atom_sites.fract_transf_matrix[1][2] -0.001358 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008651 _atom_sites.fract_transf_matrix[2][3] -0.002912 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 2001 2001 FAD FAD . F 3 NAD A 1 2002 2002 NAD NAD . G 4 SO4 A 1 2003 1 SO4 SO4 . H 2 FAD B 1 2001 2001 FAD FAD . I 3 NAD B 1 2002 2002 NAD NAD . J 4 SO4 B 1 2003 2 SO4 SO4 . K 2 FAD C 1 2001 2001 FAD FAD . L 3 NAD C 1 2002 2002 NAD NAD . M 4 SO4 C 1 2003 3 SO4 SO4 . N 2 FAD D 1 2001 2001 FAD FAD . O 3 NAD D 1 2002 2002 NAD NAD . P 4 SO4 D 1 2003 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . O 3 64.924 54.276 58.476 1 62.85 ? PA NAD 2002 D 1 HETATM 2 O O1A NAD . . . O 3 65.534 55.707 58.655 1 52.68 ? O1A NAD 2002 D 1 HETATM 3 O O2A NAD . . . O 3 66.068 53.298 58.081 1 65.56 ? O2A NAD 2002 D 1 HETATM 4 O O5B NAD . . . O 3 63.83 54.258 57.337 1 64.3 ? O5B NAD 2002 D 1 HETATM 5 C C5B NAD . . . O 3 63.358 55.375 56.61 1 60.39 ? C5B NAD 2002 D 1 HETATM 6 C C4B NAD . . . O 3 63.134 55.008 55.147 1 56.91 ? C4B NAD 2002 D 1 HETATM 7 O O4B NAD . . . O 3 64.379 54.882 54.471 1 59.09 ? O4B NAD 2002 D 1 HETATM 8 C C3B NAD . . . O 3 62.358 53.736 54.94 1 49.53 ? C3B NAD 2002 D 1 HETATM 9 O O3B NAD . . . O 3 61.633 53.742 53.758 1 40.57 ? O3B NAD 2002 D 1 HETATM 10 C C2B NAD . . . O 3 63.467 52.769 54.861 1 48.43 ? C2B NAD 2002 D 1 HETATM 11 O O2B NAD . . . O 3 63.095 51.583 54.278 1 45.22 ? O2B NAD 2002 D 1 HETATM 12 C C1B NAD . . . O 3 64.392 53.542 54.002 1 56.49 ? C1B NAD 2002 D 1 HETATM 13 N N9A NAD . . . O 3 65.74 53.005 53.94 1 56.82 ? N9A NAD 2002 D 1 HETATM 14 C C8A NAD . . . O 3 66.66 52.955 54.965 1 57.22 ? C8A NAD 2002 D 1 HETATM 15 N N7A NAD . . . O 3 67.808 52.416 54.513 1 57.58 ? N7A NAD 2002 D 1 HETATM 16 C C5A NAD . . . O 3 67.673 52.096 53.158 1 56.37 ? C5A NAD 2002 D 1 HETATM 17 C C6A NAD . . . O 3 68.503 51.537 52.206 1 52 ? C6A NAD 2002 D 1 HETATM 18 N N6A NAD . . . O 3 69.837 51.129 52.548 1 53.28 ? N6A NAD 2002 D 1 HETATM 19 N N1A NAD . . . O 3 68.055 51.367 50.945 1 52.16 ? N1A NAD 2002 D 1 HETATM 20 C C2A NAD . . . O 3 66.795 51.726 50.584 1 57.76 ? C2A NAD 2002 D 1 HETATM 21 N N3A NAD . . . O 3 65.946 52.28 51.495 1 59.92 ? N3A NAD 2002 D 1 HETATM 22 C C4A NAD . . . O 3 66.353 52.47 52.771 1 57.52 ? C4A NAD 2002 D 1 HETATM 23 O O3 NAD . . . O 3 64.201 53.859 59.836 1 80.21 ? O3 NAD 2002 D 1 HETATM 24 P PN NAD . . . O 3 63.447 52.473 60.162 1 90.88 ? PN NAD 2002 D 1 HETATM 25 O O1N NAD . . . O 3 64.384 51.291 60.167 1 91.44 ? O1N NAD 2002 D 1 HETATM 26 O O2N NAD . . . O 3 62.438 52.038 59.138 1 89.31 ? O2N NAD 2002 D 1 HETATM 27 O O5D NAD . . . O 3 62.735 52.734 61.571 1 87.9 ? O5D NAD 2002 D 1 HETATM 28 C C5D NAD . . . O 3 63.45 53.295 62.656 1 85.9 ? C5D NAD 2002 D 1 HETATM 29 C C4D NAD . . . O 3 63.294 54.803 62.818 1 83.58 ? C4D NAD 2002 D 1 HETATM 30 O O4D NAD . . . O 3 62.152 55.388 62.217 1 83.95 ? O4D NAD 2002 D 1 HETATM 31 C C3D NAD . . . O 3 63.161 55.201 64.239 1 80.54 ? C3D NAD 2002 D 1 HETATM 32 O O3D NAD . . . O 3 64.308 54.971 64.96 1 71.16 ? O3D NAD 2002 D 1 HETATM 33 C C2D NAD . . . O 3 62.792 56.638 64.096 1 84.59 ? C2D NAD 2002 D 1 HETATM 34 O O2D NAD . . . O 3 63.888 57.469 64.124 1 84.13 ? O2D NAD 2002 D 1 HETATM 35 C C1D NAD . . . O 3 62.061 56.696 62.782 1 82.45 ? C1D NAD 2002 D 1 # _model_server_stats.io_time_ms 250 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #