data_5UXH # _model_server_result.job_id eZ4IomrGV5LOd6pwON2m9Q _model_server_result.datetime_utc '2024-10-12 16:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5UXH # _exptl.entry_id 5UXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.13 _cell.angle_gamma 90 _cell.entry_id 5UXH _cell.length_a 50.23 _cell.length_b 133.92 _cell.length_c 70.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 38 1_555 A SG CYS 17 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 103 A CYS 126 1_555 A SG CYS 117 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 226 A CYS 249 1_555 A SG CYS 260 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 244 A CYS 267 1_555 A SG CYS 331 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 15 B CYS 38 1_555 B SG CYS 17 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 103 B CYS 126 1_555 B SG CYS 117 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 226 B CYS 249 1_555 B SG CYS 260 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 B SG CYS 244 B CYS 267 1_555 B SG CYS 331 B CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 39 A ASN 62 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 B ND2 ASN 39 B ASN 62 1_555 F C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 303 n n C1 O1 NAG sing 304 n n C1 O5 NAG sing 305 n n C1 H1 NAG sing 306 n n C2 C3 NAG sing 307 n n C2 N2 NAG sing 308 n n C2 H2 NAG sing 309 n n C3 C4 NAG sing 310 n n C3 O3 NAG sing 311 n n C3 H3 NAG sing 312 n n C4 C5 NAG sing 313 n n C4 O4 NAG sing 314 n n C4 H4 NAG sing 315 n n C5 C6 NAG sing 316 n n C5 O5 NAG sing 317 n n C5 H5 NAG sing 318 n n C6 O6 NAG sing 319 n n C6 H61 NAG sing 320 n n C6 H62 NAG sing 321 n n C7 C8 NAG sing 322 n n C7 N2 NAG sing 323 n n C7 O7 NAG doub 324 n n C8 H81 NAG sing 325 n n C8 H82 NAG sing 326 n n C8 H83 NAG sing 327 n n N2 HN2 NAG sing 328 n n O1 HO1 NAG sing 329 n n O3 HO3 NAG sing 330 n n O4 HO4 NAG sing 331 n n O6 HO6 NAG sing 332 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5UXH _atom_sites.fract_transf_matrix[1][1] 0.019908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GFB A 1 401 1 GFB GFB . D 3 NAG A 1 402 62 NAG NAG . E 2 GFB B 1 401 1 GFB GFB . F 3 NAG B 1 402 62 NAG NAG . G 4 HOH A 1 501 16 HOH HOH . G 4 HOH A 2 502 60 HOH HOH . G 4 HOH A 3 503 32 HOH HOH . G 4 HOH A 4 504 66 HOH HOH . G 4 HOH A 5 505 33 HOH HOH . G 4 HOH A 6 506 18 HOH HOH . G 4 HOH A 7 507 72 HOH HOH . G 4 HOH A 8 508 26 HOH HOH . G 4 HOH A 9 509 43 HOH HOH . G 4 HOH A 10 510 41 HOH HOH . G 4 HOH A 11 511 2 HOH HOH . G 4 HOH A 12 512 11 HOH HOH . G 4 HOH A 13 513 55 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 56 HOH HOH . G 4 HOH A 16 516 58 HOH HOH . G 4 HOH A 17 517 9 HOH HOH . G 4 HOH A 18 518 19 HOH HOH . G 4 HOH A 19 519 17 HOH HOH . G 4 HOH A 20 520 29 HOH HOH . G 4 HOH A 21 521 38 HOH HOH . G 4 HOH A 22 522 44 HOH HOH . G 4 HOH A 23 523 42 HOH HOH . G 4 HOH A 24 524 68 HOH HOH . G 4 HOH A 25 525 71 HOH HOH . G 4 HOH A 26 526 39 HOH HOH . G 4 HOH A 27 527 53 HOH HOH . G 4 HOH A 28 528 12 HOH HOH . G 4 HOH A 29 529 48 HOH HOH . G 4 HOH A 30 530 52 HOH HOH . G 4 HOH A 31 531 23 HOH HOH . G 4 HOH A 32 532 54 HOH HOH . G 4 HOH A 33 533 35 HOH HOH . G 4 HOH A 34 534 50 HOH HOH . G 4 HOH A 35 535 27 HOH HOH . G 4 HOH A 36 536 65 HOH HOH . H 4 HOH B 1 501 69 HOH HOH . H 4 HOH B 2 502 63 HOH HOH . H 4 HOH B 3 503 47 HOH HOH . H 4 HOH B 4 504 22 HOH HOH . H 4 HOH B 5 505 14 HOH HOH . H 4 HOH B 6 506 21 HOH HOH . H 4 HOH B 7 507 8 HOH HOH . H 4 HOH B 8 508 5 HOH HOH . H 4 HOH B 9 509 59 HOH HOH . H 4 HOH B 10 510 10 HOH HOH . H 4 HOH B 11 511 73 HOH HOH . H 4 HOH B 12 512 1 HOH HOH . H 4 HOH B 13 513 7 HOH HOH . H 4 HOH B 14 514 25 HOH HOH . H 4 HOH B 15 515 20 HOH HOH . H 4 HOH B 16 516 51 HOH HOH . H 4 HOH B 17 517 57 HOH HOH . H 4 HOH B 18 518 28 HOH HOH . H 4 HOH B 19 519 31 HOH HOH . H 4 HOH B 20 520 70 HOH HOH . H 4 HOH B 21 521 36 HOH HOH . H 4 HOH B 22 522 15 HOH HOH . H 4 HOH B 23 523 3 HOH HOH . H 4 HOH B 24 524 4 HOH HOH . H 4 HOH B 25 525 13 HOH HOH . H 4 HOH B 26 526 37 HOH HOH . H 4 HOH B 27 527 34 HOH HOH . H 4 HOH B 28 528 45 HOH HOH . H 4 HOH B 29 529 62 HOH HOH . H 4 HOH B 30 530 49 HOH HOH . H 4 HOH B 31 531 46 HOH HOH . H 4 HOH B 32 532 64 HOH HOH . H 4 HOH B 33 533 40 HOH HOH . H 4 HOH B 34 534 61 HOH HOH . H 4 HOH B 35 535 24 HOH HOH . H 4 HOH B 36 536 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -32.131 -45.237 95.753 1 66.04 ? C1 NAG 402 A 1 HETATM 2 C C2 NAG . . . D 3 -33.466 -44.744 95.163 1 79.22 ? C2 NAG 402 A 1 HETATM 3 C C3 NAG . . . D 3 -34.072 -43.622 96.014 1 80.78 ? C3 NAG 402 A 1 HETATM 4 C C4 NAG . . . D 3 -34.081 -43.988 97.491 1 74.32 ? C4 NAG 402 A 1 HETATM 5 C C5 NAG . . . D 3 -32.675 -44.377 97.91 1 71.23 ? C5 NAG 402 A 1 HETATM 6 C C6 NAG . . . D 3 -32.557 -44.753 99.369 1 82.64 ? C6 NAG 402 A 1 HETATM 7 C C7 NAG . . . D 3 -33.839 -44.848 92.731 1 84.51 ? C7 NAG 402 A 1 HETATM 8 C C8 NAG . . . D 3 -33.507 -44.232 91.404 1 84.5 ? C8 NAG 402 A 1 HETATM 9 N N2 NAG . . . D 3 -33.265 -44.283 93.798 1 81.18 ? N2 NAG 402 A 1 HETATM 10 O O3 NAG . . . D 3 -35.403 -43.379 95.575 1 85.79 ? O3 NAG 402 A 1 HETATM 11 O O4 NAG . . . D 3 -34.526 -42.884 98.27 1 82.74 ? O4 NAG 402 A 1 HETATM 12 O O5 NAG . . . D 3 -32.285 -45.521 97.145 1 68.2 ? O5 NAG 402 A 1 HETATM 13 O O6 NAG . . . D 3 -33.54 -45.707 99.745 1 95.69 ? O6 NAG 402 A 1 HETATM 14 O O7 NAG . . . D 3 -34.593 -45.81 92.83 1 80.25 ? O7 NAG 402 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #