data_5UY9 # _model_server_result.job_id KTCuoWqY9XNUZoqKdvJE_g _model_server_result.datetime_utc '2024-11-15 15:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 5UY9 # _exptl.entry_id 5UY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UY9 _cell.length_a 68.534 _cell.length_b 68.534 _cell.length_c 79.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C SER 3 B SER 3 1_555 B N TPO 4 B TPO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 B C TPO 4 B TPO 4 1_555 B N PRO 5 B PRO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale3 B C ARG 6 B ARG 6 1_555 B N1 NIT 7 B NIT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 253 n n O1 HO1 PE4 sing 254 n n C1 C2 PE4 sing 255 n n C1 H11 PE4 sing 256 n n C1 H12 PE4 sing 257 n n C2 O2 PE4 sing 258 n n C2 H21 PE4 sing 259 n n C2 H22 PE4 sing 260 n n O2 C3 PE4 sing 261 n n C3 C4 PE4 sing 262 n n C3 H31 PE4 sing 263 n n C3 H32 PE4 sing 264 n n C4 O3 PE4 sing 265 n n C4 H41 PE4 sing 266 n n C4 H42 PE4 sing 267 n n O3 C5 PE4 sing 268 n n C5 C6 PE4 sing 269 n n C5 H51 PE4 sing 270 n n C5 H52 PE4 sing 271 n n C6 O4 PE4 sing 272 n n C6 H61 PE4 sing 273 n n C6 H62 PE4 sing 274 n n O4 C7 PE4 sing 275 n n C7 C8 PE4 sing 276 n n C7 H71 PE4 sing 277 n n C7 H72 PE4 sing 278 n n C8 O5 PE4 sing 279 n n C8 H81 PE4 sing 280 n n C8 H82 PE4 sing 281 n n O5 C9 PE4 sing 282 n n C9 C10 PE4 sing 283 n n C9 H91 PE4 sing 284 n n C9 H92 PE4 sing 285 n n C10 O6 PE4 sing 286 n n C10 H101 PE4 sing 287 n n C10 H102 PE4 sing 288 n n O6 C11 PE4 sing 289 n n C11 C12 PE4 sing 290 n n C11 H111 PE4 sing 291 n n C11 H112 PE4 sing 292 n n C12 O7 PE4 sing 293 n n C12 H121 PE4 sing 294 n n C12 H122 PE4 sing 295 n n O7 C13 PE4 sing 296 n n C13 C14 PE4 sing 297 n n C13 H131 PE4 sing 298 n n C13 H132 PE4 sing 299 n n C14 O8 PE4 sing 300 n n C14 H141 PE4 sing 301 n n C14 H142 PE4 sing 302 n n O8 C15 PE4 sing 303 n n C15 C16 PE4 sing 304 n n C15 H151 PE4 sing 305 n n C15 H152 PE4 sing 306 n n C16 H161 PE4 sing 307 n n C16 H162 PE4 sing 308 n n C16 H163 PE4 sing 309 n n # _atom_sites.entry_id 5UY9 _atom_sites.fract_transf_matrix[1][1] 0.014591 _atom_sites.fract_transf_matrix[1][2] 0.008424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PE4 A 1 300 300 PE4 PE4 . D 4 SO4 A 1 301 301 SO4 SO4 . E 4 SO4 B 1 101 302 SO4 SO4 . F 5 HOH A 1 401 89 HOH HOH . F 5 HOH A 2 402 81 HOH HOH . F 5 HOH A 3 403 61 HOH HOH . F 5 HOH A 4 404 29 HOH HOH . F 5 HOH A 5 405 83 HOH HOH . F 5 HOH A 6 406 42 HOH HOH . F 5 HOH A 7 407 33 HOH HOH . F 5 HOH A 8 408 9 HOH HOH . F 5 HOH A 9 409 24 HOH HOH . F 5 HOH A 10 410 76 HOH HOH . F 5 HOH A 11 411 71 HOH HOH . F 5 HOH A 12 412 55 HOH HOH . F 5 HOH A 13 413 20 HOH HOH . F 5 HOH A 14 414 95 HOH HOH . F 5 HOH A 15 415 16 HOH HOH . F 5 HOH A 16 416 15 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 3 HOH HOH . F 5 HOH A 19 419 50 HOH HOH . F 5 HOH A 20 420 34 HOH HOH . F 5 HOH A 21 421 25 HOH HOH . F 5 HOH A 22 422 28 HOH HOH . F 5 HOH A 23 423 32 HOH HOH . F 5 HOH A 24 424 23 HOH HOH . F 5 HOH A 25 425 1 HOH HOH . F 5 HOH A 26 426 56 HOH HOH . F 5 HOH A 27 427 5 HOH HOH . F 5 HOH A 28 428 6 HOH HOH . F 5 HOH A 29 429 14 HOH HOH . F 5 HOH A 30 430 41 HOH HOH . F 5 HOH A 31 431 36 HOH HOH . F 5 HOH A 32 432 59 HOH HOH . F 5 HOH A 33 433 10 HOH HOH . F 5 HOH A 34 434 40 HOH HOH . F 5 HOH A 35 435 37 HOH HOH . F 5 HOH A 36 436 27 HOH HOH . F 5 HOH A 37 437 7 HOH HOH . F 5 HOH A 38 438 38 HOH HOH . F 5 HOH A 39 439 21 HOH HOH . F 5 HOH A 40 440 17 HOH HOH . F 5 HOH A 41 441 43 HOH HOH . F 5 HOH A 42 442 22 HOH HOH . F 5 HOH A 43 443 53 HOH HOH . F 5 HOH A 44 444 74 HOH HOH . F 5 HOH A 45 445 87 HOH HOH . F 5 HOH A 46 446 52 HOH HOH . F 5 HOH A 47 447 64 HOH HOH . F 5 HOH A 48 448 19 HOH HOH . F 5 HOH A 49 449 84 HOH HOH . F 5 HOH A 50 450 93 HOH HOH . F 5 HOH A 51 451 62 HOH HOH . F 5 HOH A 52 452 35 HOH HOH . F 5 HOH A 53 453 18 HOH HOH . F 5 HOH A 54 454 72 HOH HOH . F 5 HOH A 55 455 45 HOH HOH . F 5 HOH A 56 456 26 HOH HOH . F 5 HOH A 57 457 12 HOH HOH . F 5 HOH A 58 458 80 HOH HOH . F 5 HOH A 59 459 70 HOH HOH . F 5 HOH A 60 460 51 HOH HOH . F 5 HOH A 61 461 13 HOH HOH . F 5 HOH A 62 462 31 HOH HOH . F 5 HOH A 63 463 47 HOH HOH . F 5 HOH A 64 464 79 HOH HOH . F 5 HOH A 65 465 11 HOH HOH . F 5 HOH A 66 466 66 HOH HOH . F 5 HOH A 67 467 39 HOH HOH . F 5 HOH A 68 468 75 HOH HOH . F 5 HOH A 69 469 30 HOH HOH . F 5 HOH A 70 470 88 HOH HOH . F 5 HOH A 71 471 77 HOH HOH . F 5 HOH A 72 472 69 HOH HOH . F 5 HOH A 73 473 63 HOH HOH . F 5 HOH A 74 474 58 HOH HOH . F 5 HOH A 75 475 49 HOH HOH . F 5 HOH A 76 476 60 HOH HOH . F 5 HOH A 77 477 57 HOH HOH . F 5 HOH A 78 478 96 HOH HOH . F 5 HOH A 79 479 82 HOH HOH . G 5 HOH B 1 201 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE4 . . . C 3 20.97 -30.447 4.718 1 71.58 ? O1 PE4 300 A 1 HETATM 2 C C1 PE4 . . . C 3 21.638 -30.702 3.461 1 71.69 ? C1 PE4 300 A 1 HETATM 3 C C2 PE4 . . . C 3 21.748 -29.419 2.62 1 67.82 ? C2 PE4 300 A 1 HETATM 4 O O2 PE4 . . . C 3 20.506 -28.691 2.621 1 64.09 ? O2 PE4 300 A 1 HETATM 5 C C3 PE4 . . . C 3 19.782 -28.692 1.387 1 58.46 ? C3 PE4 300 A 1 HETATM 6 C C4 PE4 . . . C 3 18.38 -29.283 1.587 1 53.03 ? C4 PE4 300 A 1 HETATM 7 O O3 PE4 . . . C 3 17.736 -28.603 2.66 1 47.45 ? O3 PE4 300 A 1 HETATM 8 C C5 PE4 . . . C 3 16.327 -28.753 2.65 1 43.14 ? C5 PE4 300 A 1 HETATM 9 C C6 PE4 . . . C 3 15.807 -28.015 3.868 1 40.44 ? C6 PE4 300 A 1 HETATM 10 O O4 PE4 . . . C 3 16.273 -28.666 5.025 1 39.03 ? O4 PE4 300 A 1 HETATM 11 C C7 PE4 . . . C 3 15.853 -28.086 6.254 1 39.13 ? C7 PE4 300 A 1 HETATM 12 C C8 PE4 . . . C 3 16.313 -29.013 7.369 1 37.62 ? C8 PE4 300 A 1 HETATM 13 O O5 PE4 . . . C 3 17.731 -29.103 7.289 1 37.6 ? O5 PE4 300 A 1 HETATM 14 C C9 PE4 . . . C 3 18.274 -30.036 8.215 1 36.42 ? C9 PE4 300 A 1 HETATM 15 C C10 PE4 . . . C 3 19.747 -30.205 7.902 1 35.73 ? C10 PE4 300 A 1 HETATM 16 O O6 PE4 . . . C 3 20.365 -28.911 7.886 1 34.62 ? O6 PE4 300 A 1 HETATM 17 C C11 PE4 . . . C 3 21.776 -29.112 7.842 1 34.24 ? C11 PE4 300 A 1 HETATM 18 C C12 PE4 . . . C 3 22.38 -27.794 7.378 1 34.68 ? C12 PE4 300 A 1 HETATM 19 O O7 PE4 . . . C 3 22.159 -26.831 8.4 1 34.05 ? O7 PE4 300 A 1 HETATM 20 C C13 PE4 . . . C 3 22.687 -25.564 7.995 1 34.17 ? C13 PE4 300 A 1 HETATM 21 C C14 PE4 . . . C 3 22.455 -24.56 9.106 1 34.58 ? C14 PE4 300 A 1 HETATM 22 O O8 PE4 . . . C 3 21.058 -24.401 9.393 1 35.65 ? O8 PE4 300 A 1 HETATM 23 C C15 PE4 . . . C 3 21.062 -23.894 10.743 1 38.26 ? C15 PE4 300 A 1 HETATM 24 C C16 PE4 . . . C 3 19.881 -23.038 11.143 1 36.82 ? C16 PE4 300 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 24 #