data_5UYF # _model_server_result.job_id DMF3Z43YaFV444zVm3_U3A _model_server_result.datetime_utc '2024-12-27 00:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5UYF # _exptl.entry_id 5UYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UYF _cell.length_a 41.859 _cell.length_b 52.191 _cell.length_c 112.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 76 A HIS 76 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 A NE2 HIS 141 A HIS 141 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 A OE1 GLU 207 A GLU 207 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc4 A OE2 GLU 207 A GLU 207 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A OD1 ASP 282 A ASP 282 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 A OD2 ASP 282 A ASP 282 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UYF _atom_sites.fract_transf_matrix[1][1] 0.02389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 935 MN MN . C 3 HOH A 1 501 152 HOH HOH . C 3 HOH A 2 502 123 HOH HOH . C 3 HOH A 3 503 177 HOH HOH . C 3 HOH A 4 504 163 HOH HOH . C 3 HOH A 5 505 146 HOH HOH . C 3 HOH A 6 506 114 HOH HOH . C 3 HOH A 7 507 85 HOH HOH . C 3 HOH A 8 508 27 HOH HOH . C 3 HOH A 9 509 148 HOH HOH . C 3 HOH A 10 510 51 HOH HOH . C 3 HOH A 11 511 133 HOH HOH . C 3 HOH A 12 512 120 HOH HOH . C 3 HOH A 13 513 142 HOH HOH . C 3 HOH A 14 514 43 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 164 HOH HOH . C 3 HOH A 17 517 116 HOH HOH . C 3 HOH A 18 518 33 HOH HOH . C 3 HOH A 19 519 23 HOH HOH . C 3 HOH A 20 520 118 HOH HOH . C 3 HOH A 21 521 35 HOH HOH . C 3 HOH A 22 522 40 HOH HOH . C 3 HOH A 23 523 20 HOH HOH . C 3 HOH A 24 524 66 HOH HOH . C 3 HOH A 25 525 17 HOH HOH . C 3 HOH A 26 526 8 HOH HOH . C 3 HOH A 27 527 68 HOH HOH . C 3 HOH A 28 528 7 HOH HOH . C 3 HOH A 29 529 24 HOH HOH . C 3 HOH A 30 530 36 HOH HOH . C 3 HOH A 31 531 54 HOH HOH . C 3 HOH A 32 532 25 HOH HOH . C 3 HOH A 33 533 161 HOH HOH . C 3 HOH A 34 534 82 HOH HOH . C 3 HOH A 35 535 147 HOH HOH . C 3 HOH A 36 536 64 HOH HOH . C 3 HOH A 37 537 52 HOH HOH . C 3 HOH A 38 538 62 HOH HOH . C 3 HOH A 39 539 45 HOH HOH . C 3 HOH A 40 540 13 HOH HOH . C 3 HOH A 41 541 157 HOH HOH . C 3 HOH A 42 542 14 HOH HOH . C 3 HOH A 43 543 12 HOH HOH . C 3 HOH A 44 544 22 HOH HOH . C 3 HOH A 45 545 110 HOH HOH . C 3 HOH A 46 546 2 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 89 HOH HOH . C 3 HOH A 49 549 127 HOH HOH . C 3 HOH A 50 550 112 HOH HOH . C 3 HOH A 51 551 44 HOH HOH . C 3 HOH A 52 552 4 HOH HOH . C 3 HOH A 53 553 15 HOH HOH . C 3 HOH A 54 554 28 HOH HOH . C 3 HOH A 55 555 61 HOH HOH . C 3 HOH A 56 556 96 HOH HOH . C 3 HOH A 57 557 19 HOH HOH . C 3 HOH A 58 558 159 HOH HOH . C 3 HOH A 59 559 21 HOH HOH . C 3 HOH A 60 560 117 HOH HOH . C 3 HOH A 61 561 53 HOH HOH . C 3 HOH A 62 562 39 HOH HOH . C 3 HOH A 63 563 37 HOH HOH . C 3 HOH A 64 564 1 HOH HOH . C 3 HOH A 65 565 57 HOH HOH . C 3 HOH A 66 566 31 HOH HOH . C 3 HOH A 67 567 83 HOH HOH . C 3 HOH A 68 568 124 HOH HOH . C 3 HOH A 69 569 69 HOH HOH . C 3 HOH A 70 570 80 HOH HOH . C 3 HOH A 71 571 11 HOH HOH . C 3 HOH A 72 572 49 HOH HOH . C 3 HOH A 73 573 6 HOH HOH . C 3 HOH A 74 574 5 HOH HOH . C 3 HOH A 75 575 111 HOH HOH . C 3 HOH A 76 576 101 HOH HOH . C 3 HOH A 77 577 176 HOH HOH . C 3 HOH A 78 578 42 HOH HOH . C 3 HOH A 79 579 115 HOH HOH . C 3 HOH A 80 580 60 HOH HOH . C 3 HOH A 81 581 103 HOH HOH . C 3 HOH A 82 582 34 HOH HOH . C 3 HOH A 83 583 30 HOH HOH . C 3 HOH A 84 584 3 HOH HOH . C 3 HOH A 85 585 38 HOH HOH . C 3 HOH A 86 586 95 HOH HOH . C 3 HOH A 87 587 55 HOH HOH . C 3 HOH A 88 588 56 HOH HOH . C 3 HOH A 89 589 32 HOH HOH . C 3 HOH A 90 590 107 HOH HOH . C 3 HOH A 91 591 145 HOH HOH . C 3 HOH A 92 592 18 HOH HOH . C 3 HOH A 93 593 91 HOH HOH . C 3 HOH A 94 594 104 HOH HOH . C 3 HOH A 95 595 48 HOH HOH . C 3 HOH A 96 596 98 HOH HOH . C 3 HOH A 97 597 153 HOH HOH . C 3 HOH A 98 598 26 HOH HOH . C 3 HOH A 99 599 63 HOH HOH . C 3 HOH A 100 600 178 HOH HOH . C 3 HOH A 101 601 109 HOH HOH . C 3 HOH A 102 602 88 HOH HOH . C 3 HOH A 103 603 158 HOH HOH . C 3 HOH A 104 604 151 HOH HOH . C 3 HOH A 105 605 10 HOH HOH . C 3 HOH A 106 606 65 HOH HOH . C 3 HOH A 107 607 131 HOH HOH . C 3 HOH A 108 608 175 HOH HOH . C 3 HOH A 109 609 77 HOH HOH . C 3 HOH A 110 610 143 HOH HOH . C 3 HOH A 111 611 174 HOH HOH . C 3 HOH A 112 612 149 HOH HOH . C 3 HOH A 113 613 29 HOH HOH . C 3 HOH A 114 614 160 HOH HOH . C 3 HOH A 115 615 150 HOH HOH . C 3 HOH A 116 616 46 HOH HOH . C 3 HOH A 117 617 125 HOH HOH . C 3 HOH A 118 618 84 HOH HOH . C 3 HOH A 119 619 87 HOH HOH . C 3 HOH A 120 620 9 HOH HOH . C 3 HOH A 121 621 73 HOH HOH . C 3 HOH A 122 622 86 HOH HOH . C 3 HOH A 123 623 81 HOH HOH . C 3 HOH A 124 624 126 HOH HOH . C 3 HOH A 125 625 181 HOH HOH . C 3 HOH A 126 626 165 HOH HOH . C 3 HOH A 127 627 134 HOH HOH . C 3 HOH A 128 628 105 HOH HOH . C 3 HOH A 129 629 173 HOH HOH . C 3 HOH A 130 630 70 HOH HOH . C 3 HOH A 131 631 41 HOH HOH . C 3 HOH A 132 632 135 HOH HOH . C 3 HOH A 133 633 132 HOH HOH . C 3 HOH A 134 634 106 HOH HOH . C 3 HOH A 135 635 144 HOH HOH . C 3 HOH A 136 636 171 HOH HOH . C 3 HOH A 137 637 119 HOH HOH . C 3 HOH A 138 638 180 HOH HOH . C 3 HOH A 139 639 50 HOH HOH . C 3 HOH A 140 640 169 HOH HOH . C 3 HOH A 141 641 155 HOH HOH . C 3 HOH A 142 642 58 HOH HOH . C 3 HOH A 143 643 94 HOH HOH . C 3 HOH A 144 644 100 HOH HOH . C 3 HOH A 145 645 79 HOH HOH . C 3 HOH A 146 646 113 HOH HOH . C 3 HOH A 147 647 168 HOH HOH . C 3 HOH A 148 648 179 HOH HOH . C 3 HOH A 149 649 75 HOH HOH . C 3 HOH A 150 650 138 HOH HOH . C 3 HOH A 151 651 90 HOH HOH . C 3 HOH A 152 652 136 HOH HOH . C 3 HOH A 153 653 72 HOH HOH . C 3 HOH A 154 654 154 HOH HOH . C 3 HOH A 155 655 97 HOH HOH . C 3 HOH A 156 656 93 HOH HOH . C 3 HOH A 157 657 156 HOH HOH . C 3 HOH A 158 658 76 HOH HOH . C 3 HOH A 159 659 67 HOH HOH . C 3 HOH A 160 660 122 HOH HOH . C 3 HOH A 161 661 99 HOH HOH . C 3 HOH A 162 662 108 HOH HOH . C 3 HOH A 163 663 137 HOH HOH . C 3 HOH A 164 664 92 HOH HOH . C 3 HOH A 165 665 140 HOH HOH . C 3 HOH A 166 666 139 HOH HOH . C 3 HOH A 167 667 167 HOH HOH . C 3 HOH A 168 668 141 HOH HOH . C 3 HOH A 169 669 170 HOH HOH . C 3 HOH A 170 670 59 HOH HOH . C 3 HOH A 171 671 74 HOH HOH . C 3 HOH A 172 672 172 HOH HOH . C 3 HOH A 173 673 78 HOH HOH . C 3 HOH A 174 674 129 HOH HOH . C 3 HOH A 175 675 166 HOH HOH . C 3 HOH A 176 676 102 HOH HOH . C 3 HOH A 177 677 128 HOH HOH . C 3 HOH A 178 678 130 HOH HOH . C 3 HOH A 179 679 121 HOH HOH . C 3 HOH A 180 680 162 HOH HOH . C 3 HOH A 181 681 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.266 _atom_site.Cartn_y -9.245 _atom_site.Cartn_z -13.277 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #