data_5UZE # _model_server_result.job_id r6oAOBeWqeAbBPSEFXA9RQ _model_server_result.datetime_utc '2024-11-26 16:37:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5UZE # _exptl.entry_id 5UZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.03 _cell.angle_beta 103.99 _cell.angle_gamma 105.46 _cell.entry_id 5UZE _cell.length_a 64.777 _cell.length_b 77.662 _cell.length_c 80.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 344 A GLU 465 1_555 G K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc2 A O SER 345 A SER 466 1_555 G K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc3 A O HIS 346 A HIS 467 1_555 G K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc4 G K K . A K 502 1_555 B O GLY 177 B GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc5 G K K . A K 502 1_555 B O GLY 179 B GLY 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc6 G K K . A K 502 1_555 B O CYS 182 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc7 B O GLU 344 B GLU 465 1_555 J K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc8 B O SER 345 B SER 466 1_555 J K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc9 B O HIS 346 B HIS 467 1_555 J K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc10 J K K . B K 503 1_555 D O GLY 177 D GLY 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc11 J K K . B K 503 1_555 D O GLY 179 D GLY 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc12 J K K . B K 503 1_555 D O CYS 182 D CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc13 J K K . B K 503 1_555 S O HOH . D HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 241 n n P O2P IMP sing 242 n n P O3P IMP sing 243 n n P O5' IMP sing 244 n n O2P HOP2 IMP sing 245 n n O3P HOP3 IMP sing 246 n n O5' C5' IMP sing 247 n n C5' C4' IMP sing 248 n n C5' "H5'1" IMP sing 249 n n C5' "H5'2" IMP sing 250 n n C4' O4' IMP sing 251 n n C4' C3' IMP sing 252 n n C4' H4' IMP sing 253 n n O4' C1' IMP sing 254 n n C3' O3' IMP sing 255 n n C3' C2' IMP sing 256 n n C3' H3' IMP sing 257 n n O3' HO3' IMP sing 258 n n C2' O2' IMP sing 259 n n C2' C1' IMP sing 260 n n C2' H2' IMP sing 261 n n O2' HO2' IMP sing 262 n n C1' N9 IMP sing 263 n n C1' H1' IMP sing 264 n n N9 C8 IMP sing 265 n y N9 C4 IMP sing 266 n y C8 N7 IMP doub 267 n y C8 H8 IMP sing 268 n n N7 C5 IMP sing 269 n y C5 C6 IMP sing 270 n n C5 C4 IMP doub 271 n y C6 O6 IMP doub 272 n n C6 N1 IMP sing 273 n n N1 C2 IMP sing 274 n n N1 HN1 IMP sing 275 n n C2 N3 IMP doub 276 n n C2 H2 IMP sing 277 n n N3 C4 IMP sing 278 n n # _atom_sites.entry_id 5UZE _atom_sites.fract_transf_matrix[1][1] 0.015438 _atom_sites.fract_transf_matrix[1][2] 0.004269 _atom_sites.fract_transf_matrix[1][3] 0.006334 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01336 _atom_sites.fract_transf_matrix[2][3] 0.006457 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 500 500 IMP IMP . F 3 8L1 A 1 501 501 8L1 P18 . G 4 K A 1 502 502 K K . H 2 IMP B 1 501 500 IMP IMP . I 3 8L1 B 1 502 501 8L1 P18 . J 4 K B 1 503 502 K K . K 5 GOL B 1 504 502 GOL GOL . L 2 IMP C 1 500 500 IMP IMP . M 3 8L1 C 1 501 501 8L1 P18 . N 2 IMP D 1 500 500 IMP IMP . O 3 8L1 D 1 501 501 8L1 P18 . P 6 HOH A 1 601 12 HOH HOH . P 6 HOH A 2 602 128 HOH HOH . P 6 HOH A 3 603 116 HOH HOH . P 6 HOH A 4 604 4 HOH HOH . P 6 HOH A 5 605 110 HOH HOH . P 6 HOH A 6 606 5 HOH HOH . P 6 HOH A 7 607 16 HOH HOH . P 6 HOH A 8 608 91 HOH HOH . P 6 HOH A 9 609 108 HOH HOH . P 6 HOH A 10 610 65 HOH HOH . P 6 HOH A 11 611 55 HOH HOH . P 6 HOH A 12 612 80 HOH HOH . P 6 HOH A 13 613 75 HOH HOH . P 6 HOH A 14 614 52 HOH HOH . P 6 HOH A 15 615 83 HOH HOH . P 6 HOH A 16 616 88 HOH HOH . P 6 HOH A 17 617 7 HOH HOH . P 6 HOH A 18 618 33 HOH HOH . P 6 HOH A 19 619 34 HOH HOH . P 6 HOH A 20 620 50 HOH HOH . P 6 HOH A 21 621 24 HOH HOH . P 6 HOH A 22 622 41 HOH HOH . P 6 HOH A 23 623 74 HOH HOH . P 6 HOH A 24 624 82 HOH HOH . P 6 HOH A 25 625 136 HOH HOH . P 6 HOH A 26 626 13 HOH HOH . P 6 HOH A 27 627 32 HOH HOH . P 6 HOH A 28 628 20 HOH HOH . P 6 HOH A 29 629 73 HOH HOH . P 6 HOH A 30 630 49 HOH HOH . P 6 HOH A 31 631 6 HOH HOH . P 6 HOH A 32 632 46 HOH HOH . P 6 HOH A 33 633 154 HOH HOH . P 6 HOH A 34 634 36 HOH HOH . P 6 HOH A 35 635 2 HOH HOH . P 6 HOH A 36 636 35 HOH HOH . P 6 HOH A 37 637 63 HOH HOH . P 6 HOH A 38 638 153 HOH HOH . P 6 HOH A 39 639 125 HOH HOH . Q 6 HOH B 1 601 127 HOH HOH . Q 6 HOH B 2 602 39 HOH HOH . Q 6 HOH B 3 603 84 HOH HOH . Q 6 HOH B 4 604 148 HOH HOH . Q 6 HOH B 5 605 120 HOH HOH . Q 6 HOH B 6 606 95 HOH HOH . Q 6 HOH B 7 607 68 HOH HOH . Q 6 HOH B 8 608 17 HOH HOH . Q 6 HOH B 9 609 96 HOH HOH . Q 6 HOH B 10 610 10 HOH HOH . Q 6 HOH B 11 611 86 HOH HOH . Q 6 HOH B 12 612 133 HOH HOH . Q 6 HOH B 13 613 29 HOH HOH . Q 6 HOH B 14 614 135 HOH HOH . Q 6 HOH B 15 615 8 HOH HOH . Q 6 HOH B 16 616 81 HOH HOH . Q 6 HOH B 17 617 38 HOH HOH . Q 6 HOH B 18 618 118 HOH HOH . Q 6 HOH B 19 619 22 HOH HOH . Q 6 HOH B 20 620 105 HOH HOH . Q 6 HOH B 21 621 31 HOH HOH . Q 6 HOH B 22 622 99 HOH HOH . Q 6 HOH B 23 623 18 HOH HOH . Q 6 HOH B 24 624 122 HOH HOH . Q 6 HOH B 25 625 64 HOH HOH . Q 6 HOH B 26 626 30 HOH HOH . Q 6 HOH B 27 627 21 HOH HOH . Q 6 HOH B 28 628 102 HOH HOH . Q 6 HOH B 29 629 59 HOH HOH . Q 6 HOH B 30 630 126 HOH HOH . Q 6 HOH B 31 631 15 HOH HOH . Q 6 HOH B 32 632 51 HOH HOH . Q 6 HOH B 33 633 104 HOH HOH . Q 6 HOH B 34 634 48 HOH HOH . Q 6 HOH B 35 635 14 HOH HOH . Q 6 HOH B 36 636 47 HOH HOH . Q 6 HOH B 37 637 11 HOH HOH . Q 6 HOH B 38 638 132 HOH HOH . Q 6 HOH B 39 639 90 HOH HOH . Q 6 HOH B 40 640 1 HOH HOH . Q 6 HOH B 41 641 155 HOH HOH . R 6 HOH C 1 601 70 HOH HOH . R 6 HOH C 2 602 145 HOH HOH . R 6 HOH C 3 603 138 HOH HOH . R 6 HOH C 4 604 56 HOH HOH . R 6 HOH C 5 605 129 HOH HOH . R 6 HOH C 6 606 130 HOH HOH . R 6 HOH C 7 607 89 HOH HOH . R 6 HOH C 8 608 112 HOH HOH . R 6 HOH C 9 609 109 HOH HOH . R 6 HOH C 10 610 28 HOH HOH . R 6 HOH C 11 611 3 HOH HOH . R 6 HOH C 12 612 149 HOH HOH . R 6 HOH C 13 613 150 HOH HOH . R 6 HOH C 14 614 72 HOH HOH . R 6 HOH C 15 615 146 HOH HOH . R 6 HOH C 16 616 67 HOH HOH . R 6 HOH C 17 617 57 HOH HOH . R 6 HOH C 18 618 77 HOH HOH . R 6 HOH C 19 619 44 HOH HOH . R 6 HOH C 20 620 97 HOH HOH . R 6 HOH C 21 621 147 HOH HOH . R 6 HOH C 22 622 45 HOH HOH . R 6 HOH C 23 623 42 HOH HOH . R 6 HOH C 24 624 124 HOH HOH . R 6 HOH C 25 625 106 HOH HOH . R 6 HOH C 26 626 79 HOH HOH . R 6 HOH C 27 627 54 HOH HOH . R 6 HOH C 28 628 25 HOH HOH . R 6 HOH C 29 629 53 HOH HOH . R 6 HOH C 30 630 71 HOH HOH . R 6 HOH C 31 631 111 HOH HOH . R 6 HOH C 32 632 140 HOH HOH . R 6 HOH C 33 633 123 HOH HOH . R 6 HOH C 34 634 134 HOH HOH . R 6 HOH C 35 635 119 HOH HOH . R 6 HOH C 36 636 121 HOH HOH . R 6 HOH C 37 637 139 HOH HOH . S 6 HOH D 1 601 117 HOH HOH . S 6 HOH D 2 602 61 HOH HOH . S 6 HOH D 3 603 98 HOH HOH . S 6 HOH D 4 604 9 HOH HOH . S 6 HOH D 5 605 19 HOH HOH . S 6 HOH D 6 606 69 HOH HOH . S 6 HOH D 7 607 27 HOH HOH . S 6 HOH D 8 608 113 HOH HOH . S 6 HOH D 9 609 92 HOH HOH . S 6 HOH D 10 610 107 HOH HOH . S 6 HOH D 11 611 114 HOH HOH . S 6 HOH D 12 612 85 HOH HOH . S 6 HOH D 13 613 37 HOH HOH . S 6 HOH D 14 614 143 HOH HOH . S 6 HOH D 15 615 142 HOH HOH . S 6 HOH D 16 616 60 HOH HOH . S 6 HOH D 17 617 115 HOH HOH . S 6 HOH D 18 618 76 HOH HOH . S 6 HOH D 19 619 94 HOH HOH . S 6 HOH D 20 620 78 HOH HOH . S 6 HOH D 21 621 66 HOH HOH . S 6 HOH D 22 622 131 HOH HOH . S 6 HOH D 23 623 101 HOH HOH . S 6 HOH D 24 624 58 HOH HOH . S 6 HOH D 25 625 87 HOH HOH . S 6 HOH D 26 626 152 HOH HOH . S 6 HOH D 27 627 93 HOH HOH . S 6 HOH D 28 628 137 HOH HOH . S 6 HOH D 29 629 100 HOH HOH . S 6 HOH D 30 630 43 HOH HOH . S 6 HOH D 31 631 40 HOH HOH . S 6 HOH D 32 632 62 HOH HOH . S 6 HOH D 33 633 103 HOH HOH . S 6 HOH D 34 634 141 HOH HOH . S 6 HOH D 35 635 151 HOH HOH . S 6 HOH D 36 636 144 HOH HOH . S 6 HOH D 37 637 23 HOH HOH . S 6 HOH D 38 638 26 HOH HOH . S 6 HOH D 39 639 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . H 2 -8.933 18.722 -10.286 1 37.98 ? P IMP 501 B 1 HETATM 2 O O1P IMP . . . H 2 -8.071 19.909 -10.371 1 43.74 ? O1P IMP 501 B 1 HETATM 3 O O2P IMP . . . H 2 -8.165 17.635 -9.651 1 42.12 ? O2P IMP 501 B 1 HETATM 4 O O3P IMP . . . H 2 -10.118 19.037 -9.486 1 32.21 ? O3P IMP 501 B 1 HETATM 5 O O5' IMP . . . H 2 -9.319 18.292 -11.761 1 35.14 ? O5' IMP 501 B 1 HETATM 6 C C5' IMP . . . H 2 -9.979 19.179 -12.646 1 36.09 ? C5' IMP 501 B 1 HETATM 7 C C4' IMP . . . H 2 -9.811 18.683 -14.069 1 37.66 ? C4' IMP 501 B 1 HETATM 8 O O4' IMP . . . H 2 -10.561 17.498 -14.306 1 37.11 ? O4' IMP 501 B 1 HETATM 9 C C3' IMP . . . H 2 -10.304 19.68 -15.089 1 40.9 ? C3' IMP 501 B 1 HETATM 10 O O3' IMP . . . H 2 -9.243 20.497 -15.547 1 41.79 ? O3' IMP 501 B 1 HETATM 11 C C2' IMP . . . H 2 -10.733 18.815 -16.235 1 36.36 ? C2' IMP 501 B 1 HETATM 12 O O2' IMP . . . H 2 -9.581 18.639 -17.035 1 30.04 ? O2' IMP 501 B 1 HETATM 13 C C1' IMP . . . H 2 -11.074 17.467 -15.639 1 41.43 ? C1' IMP 501 B 1 HETATM 14 N N9 IMP . . . H 2 -12.527 17.172 -15.57 1 39.78 ? N9 IMP 501 B 1 HETATM 15 C C8 IMP . . . H 2 -13.504 18.017 -15.277 1 39.75 ? C8 IMP 501 B 1 HETATM 16 N N7 IMP . . . H 2 -14.672 17.364 -15.281 1 41.56 ? N7 IMP 501 B 1 HETATM 17 C C5 IMP . . . H 2 -14.418 16.083 -15.566 1 45.77 ? C5 IMP 501 B 1 HETATM 18 C C6 IMP . . . H 2 -15.199 14.944 -15.705 1 45.37 ? C6 IMP 501 B 1 HETATM 19 O O6 IMP . . . H 2 -16.419 14.97 -15.558 1 45.58 ? O6 IMP 501 B 1 HETATM 20 N N1 IMP . . . H 2 -14.624 13.785 -16.003 1 41.92 ? N1 IMP 501 B 1 HETATM 21 C C2 IMP . . . H 2 -13.309 13.71 -16.163 1 49.63 ? C2 IMP 501 B 1 HETATM 22 N N3 IMP . . . H 2 -12.535 14.781 -16.035 1 44.81 ? N3 IMP 501 B 1 HETATM 23 C C4 IMP . . . H 2 -13.064 15.977 -15.738 1 42.07 ? C4 IMP 501 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #