data_5UZH # _model_server_result.job_id EUXEkbvAQy0YNqYIjToPYw _model_server_result.datetime_utc '2024-11-02 17:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5UZH # _exptl.entry_id 5UZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UZH _cell.length_a 92.73 _cell.length_b 92.73 _cell.length_c 94.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 303 n n PA O2A NAP sing 304 n n PA O5B NAP sing 305 n n PA O3 NAP sing 306 n n O2A HOA2 NAP sing 307 n n O5B C5B NAP sing 308 n n C5B C4B NAP sing 309 n n C5B H51A NAP sing 310 n n C5B H52A NAP sing 311 n n C4B O4B NAP sing 312 n n C4B C3B NAP sing 313 n n C4B H4B NAP sing 314 n n O4B C1B NAP sing 315 n n C3B O3B NAP sing 316 n n C3B C2B NAP sing 317 n n C3B H3B NAP sing 318 n n O3B HO3A NAP sing 319 n n C2B O2B NAP sing 320 n n C2B C1B NAP sing 321 n n C2B H2B NAP sing 322 n n O2B P2B NAP sing 323 n n C1B N9A NAP sing 324 n n C1B H1B NAP sing 325 n n N9A C8A NAP sing 326 n y N9A C4A NAP sing 327 n y C8A N7A NAP doub 328 n y C8A H8A NAP sing 329 n n N7A C5A NAP sing 330 n y C5A C6A NAP sing 331 n y C5A C4A NAP doub 332 n y C6A N6A NAP sing 333 n n C6A N1A NAP doub 334 n y N6A H61A NAP sing 335 n n N6A H62A NAP sing 336 n n N1A C2A NAP sing 337 n y C2A N3A NAP doub 338 n y C2A H2A NAP sing 339 n n N3A C4A NAP sing 340 n y O3 PN NAP sing 341 n n PN O1N NAP doub 342 n n PN O2N NAP sing 343 n n PN O5D NAP sing 344 n n O5D C5D NAP sing 345 n n C5D C4D NAP sing 346 n n C5D H51N NAP sing 347 n n C5D H52N NAP sing 348 n n C4D O4D NAP sing 349 n n C4D C3D NAP sing 350 n n C4D H4D NAP sing 351 n n O4D C1D NAP sing 352 n n C3D O3D NAP sing 353 n n C3D C2D NAP sing 354 n n C3D H3D NAP sing 355 n n O3D HO3N NAP sing 356 n n C2D O2D NAP sing 357 n n C2D C1D NAP sing 358 n n C2D H2D NAP sing 359 n n O2D HO2N NAP sing 360 n n C1D N1N NAP sing 361 n n C1D H1D NAP sing 362 n n N1N C2N NAP sing 363 n y N1N C6N NAP doub 364 n y C2N C3N NAP doub 365 n y C2N H2N NAP sing 366 n n C3N C7N NAP sing 367 n n C3N C4N NAP sing 368 n y C7N O7N NAP doub 369 n n C7N N7N NAP sing 370 n n N7N H71N NAP sing 371 n n N7N H72N NAP sing 372 n n C4N C5N NAP doub 373 n y C4N H4N NAP sing 374 n n C5N C6N NAP sing 375 n y C5N H5N NAP sing 376 n n C6N H6N NAP sing 377 n n P2B O1X NAP doub 378 n n P2B O2X NAP sing 379 n n P2B O3X NAP sing 380 n n O2X HOP2 NAP sing 381 n n O3X HOP3 NAP sing 382 n n # _atom_sites.entry_id 5UZH _atom_sites.fract_transf_matrix[1][1] 0.010784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 401 GDP GDP . C 3 NAP A 1 402 411 NAP NAP . D 4 MPD A 1 403 501 MPD MPD . E 4 MPD A 1 404 502 MPD MPD . F 4 MPD A 1 405 503 MPD MPD . G 5 CL A 1 406 601 CL CL . H 6 HOH A 1 501 59 HOH HOH . H 6 HOH A 2 502 31 HOH HOH . H 6 HOH A 3 503 80 HOH HOH . H 6 HOH A 4 504 85 HOH HOH . H 6 HOH A 5 505 60 HOH HOH . H 6 HOH A 6 506 149 HOH HOH . H 6 HOH A 7 507 58 HOH HOH . H 6 HOH A 8 508 14 HOH HOH . H 6 HOH A 9 509 92 HOH HOH . H 6 HOH A 10 510 129 HOH HOH . H 6 HOH A 11 511 36 HOH HOH . H 6 HOH A 12 512 162 HOH HOH . H 6 HOH A 13 513 42 HOH HOH . H 6 HOH A 14 514 43 HOH HOH . H 6 HOH A 15 515 2 HOH HOH . H 6 HOH A 16 516 133 HOH HOH . H 6 HOH A 17 517 52 HOH HOH . H 6 HOH A 18 518 123 HOH HOH . H 6 HOH A 19 519 67 HOH HOH . H 6 HOH A 20 520 29 HOH HOH . H 6 HOH A 21 521 56 HOH HOH . H 6 HOH A 22 522 27 HOH HOH . H 6 HOH A 23 523 120 HOH HOH . H 6 HOH A 24 524 21 HOH HOH . H 6 HOH A 25 525 95 HOH HOH . H 6 HOH A 26 526 76 HOH HOH . H 6 HOH A 27 527 12 HOH HOH . H 6 HOH A 28 528 81 HOH HOH . H 6 HOH A 29 529 22 HOH HOH . H 6 HOH A 30 530 23 HOH HOH . H 6 HOH A 31 531 35 HOH HOH . H 6 HOH A 32 532 46 HOH HOH . H 6 HOH A 33 533 94 HOH HOH . H 6 HOH A 34 534 9 HOH HOH . H 6 HOH A 35 535 99 HOH HOH . H 6 HOH A 36 536 16 HOH HOH . H 6 HOH A 37 537 17 HOH HOH . H 6 HOH A 38 538 10 HOH HOH . H 6 HOH A 39 539 104 HOH HOH . H 6 HOH A 40 540 51 HOH HOH . H 6 HOH A 41 541 45 HOH HOH . H 6 HOH A 42 542 3 HOH HOH . H 6 HOH A 43 543 114 HOH HOH . H 6 HOH A 44 544 50 HOH HOH . H 6 HOH A 45 545 78 HOH HOH . H 6 HOH A 46 546 44 HOH HOH . H 6 HOH A 47 547 39 HOH HOH . H 6 HOH A 48 548 161 HOH HOH . H 6 HOH A 49 549 54 HOH HOH . H 6 HOH A 50 550 102 HOH HOH . H 6 HOH A 51 551 28 HOH HOH . H 6 HOH A 52 552 97 HOH HOH . H 6 HOH A 53 553 63 HOH HOH . H 6 HOH A 54 554 40 HOH HOH . H 6 HOH A 55 555 19 HOH HOH . H 6 HOH A 56 556 163 HOH HOH . H 6 HOH A 57 557 96 HOH HOH . H 6 HOH A 58 558 5 HOH HOH . H 6 HOH A 59 559 61 HOH HOH . H 6 HOH A 60 560 106 HOH HOH . H 6 HOH A 61 561 53 HOH HOH . H 6 HOH A 62 562 137 HOH HOH . H 6 HOH A 63 563 11 HOH HOH . H 6 HOH A 64 564 8 HOH HOH . H 6 HOH A 65 565 127 HOH HOH . H 6 HOH A 66 566 69 HOH HOH . H 6 HOH A 67 567 15 HOH HOH . H 6 HOH A 68 568 37 HOH HOH . H 6 HOH A 69 569 26 HOH HOH . H 6 HOH A 70 570 25 HOH HOH . H 6 HOH A 71 571 110 HOH HOH . H 6 HOH A 72 572 30 HOH HOH . H 6 HOH A 73 573 65 HOH HOH . H 6 HOH A 74 574 93 HOH HOH . H 6 HOH A 75 575 6 HOH HOH . H 6 HOH A 76 576 48 HOH HOH . H 6 HOH A 77 577 70 HOH HOH . H 6 HOH A 78 578 66 HOH HOH . H 6 HOH A 79 579 136 HOH HOH . H 6 HOH A 80 580 98 HOH HOH . H 6 HOH A 81 581 91 HOH HOH . H 6 HOH A 82 582 82 HOH HOH . H 6 HOH A 83 583 33 HOH HOH . H 6 HOH A 84 584 89 HOH HOH . H 6 HOH A 85 585 4 HOH HOH . H 6 HOH A 86 586 38 HOH HOH . H 6 HOH A 87 587 77 HOH HOH . H 6 HOH A 88 588 24 HOH HOH . H 6 HOH A 89 589 68 HOH HOH . H 6 HOH A 90 590 86 HOH HOH . H 6 HOH A 91 591 105 HOH HOH . H 6 HOH A 92 592 142 HOH HOH . H 6 HOH A 93 593 108 HOH HOH . H 6 HOH A 94 594 55 HOH HOH . H 6 HOH A 95 595 20 HOH HOH . H 6 HOH A 96 596 109 HOH HOH . H 6 HOH A 97 597 101 HOH HOH . H 6 HOH A 98 598 117 HOH HOH . H 6 HOH A 99 599 150 HOH HOH . H 6 HOH A 100 600 128 HOH HOH . H 6 HOH A 101 601 100 HOH HOH . H 6 HOH A 102 602 74 HOH HOH . H 6 HOH A 103 603 143 HOH HOH . H 6 HOH A 104 604 49 HOH HOH . H 6 HOH A 105 605 122 HOH HOH . H 6 HOH A 106 606 139 HOH HOH . H 6 HOH A 107 607 125 HOH HOH . H 6 HOH A 108 608 87 HOH HOH . H 6 HOH A 109 609 57 HOH HOH . H 6 HOH A 110 610 7 HOH HOH . H 6 HOH A 111 611 119 HOH HOH . H 6 HOH A 112 612 13 HOH HOH . H 6 HOH A 113 613 34 HOH HOH . H 6 HOH A 114 614 138 HOH HOH . H 6 HOH A 115 615 124 HOH HOH . H 6 HOH A 116 616 1 HOH HOH . H 6 HOH A 117 617 64 HOH HOH . H 6 HOH A 118 618 71 HOH HOH . H 6 HOH A 119 619 47 HOH HOH . H 6 HOH A 120 620 41 HOH HOH . H 6 HOH A 121 621 146 HOH HOH . H 6 HOH A 122 622 131 HOH HOH . H 6 HOH A 123 623 145 HOH HOH . H 6 HOH A 124 624 152 HOH HOH . H 6 HOH A 125 625 116 HOH HOH . H 6 HOH A 126 626 115 HOH HOH . H 6 HOH A 127 627 159 HOH HOH . H 6 HOH A 128 628 79 HOH HOH . H 6 HOH A 129 629 113 HOH HOH . H 6 HOH A 130 630 72 HOH HOH . H 6 HOH A 131 631 134 HOH HOH . H 6 HOH A 132 632 147 HOH HOH . H 6 HOH A 133 633 165 HOH HOH . H 6 HOH A 134 634 90 HOH HOH . H 6 HOH A 135 635 73 HOH HOH . H 6 HOH A 136 636 75 HOH HOH . H 6 HOH A 137 637 151 HOH HOH . H 6 HOH A 138 638 88 HOH HOH . H 6 HOH A 139 639 140 HOH HOH . H 6 HOH A 140 640 166 HOH HOH . H 6 HOH A 141 641 83 HOH HOH . H 6 HOH A 142 642 157 HOH HOH . H 6 HOH A 143 643 144 HOH HOH . H 6 HOH A 144 644 158 HOH HOH . H 6 HOH A 145 645 156 HOH HOH . H 6 HOH A 146 646 132 HOH HOH . H 6 HOH A 147 647 130 HOH HOH . H 6 HOH A 148 648 164 HOH HOH . H 6 HOH A 149 649 155 HOH HOH . H 6 HOH A 150 650 153 HOH HOH . H 6 HOH A 151 651 62 HOH HOH . H 6 HOH A 152 652 135 HOH HOH . H 6 HOH A 153 653 32 HOH HOH . H 6 HOH A 154 654 167 HOH HOH . H 6 HOH A 155 655 118 HOH HOH . H 6 HOH A 156 656 18 HOH HOH . H 6 HOH A 157 657 84 HOH HOH . H 6 HOH A 158 658 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -21.235 -6.08 -2.276 1 31.19 ? PA NAP 402 A 1 HETATM 2 O O1A NAP . . . C 3 -22.329 -7.09 -2.412 1 26.27 ? O1A NAP 402 A 1 HETATM 3 O O2A NAP . . . C 3 -20.646 -5.979 -0.873 1 32.63 ? O2A NAP 402 A 1 HETATM 4 O O5B NAP . . . C 3 -20.104 -6.354 -3.368 1 31.74 ? O5B NAP 402 A 1 HETATM 5 C C5B NAP . . . C 3 -18.814 -5.727 -3.281 1 31.57 ? C5B NAP 402 A 1 HETATM 6 C C4B NAP . . . C 3 -17.998 -6.434 -4.327 1 33.37 ? C4B NAP 402 A 1 HETATM 7 O O4B NAP . . . C 3 -16.653 -5.904 -4.339 1 31.53 ? O4B NAP 402 A 1 HETATM 8 C C3B NAP . . . C 3 -17.862 -7.947 -4.126 1 31.59 ? C3B NAP 402 A 1 HETATM 9 O O3B NAP . . . C 3 -17.847 -8.598 -5.396 1 28.68 ? O3B NAP 402 A 1 HETATM 10 C C2B NAP . . . C 3 -16.486 -8.048 -3.47 1 35.15 ? C2B NAP 402 A 1 HETATM 11 O O2B NAP . . . C 3 -15.843 -9.33 -3.632 1 32.09 ? O2B NAP 402 A 1 HETATM 12 C C1B NAP . . . C 3 -15.748 -6.984 -4.267 1 36.17 ? C1B NAP 402 A 1 HETATM 13 N N9A NAP . . . C 3 -14.513 -6.531 -3.646 1 38.23 ? N9A NAP 402 A 1 HETATM 14 C C8A NAP . . . C 3 -14.34 -6.081 -2.364 1 35.92 ? C8A NAP 402 A 1 HETATM 15 N N7A NAP . . . C 3 -13.105 -5.742 -2.079 1 38 ? N7A NAP 402 A 1 HETATM 16 C C5A NAP . . . C 3 -12.418 -5.984 -3.258 1 37.56 ? C5A NAP 402 A 1 HETATM 17 C C6A NAP . . . C 3 -11.072 -5.796 -3.628 1 32.23 ? C6A NAP 402 A 1 HETATM 18 N N6A NAP . . . C 3 -10.114 -5.424 -2.776 1 26.54 ? N6A NAP 402 A 1 HETATM 19 N N1A NAP . . . C 3 -10.728 -6.059 -4.908 1 32.82 ? N1A NAP 402 A 1 HETATM 20 C C2A NAP . . . C 3 -11.666 -6.519 -5.744 1 33.13 ? C2A NAP 402 A 1 HETATM 21 N N3A NAP . . . C 3 -12.958 -6.767 -5.501 1 35.18 ? N3A NAP 402 A 1 HETATM 22 C C4A NAP . . . C 3 -13.273 -6.468 -4.237 1 36.57 ? C4A NAP 402 A 1 HETATM 23 O O3 NAP . . . C 3 -21.783 -4.635 -2.653 1 36.11 ? O3 NAP 402 A 1 HETATM 24 P PN NAP . . . C 3 -23.112 -4.262 -3.455 1 29.88 ? PN NAP 402 A 1 HETATM 25 O O1N NAP . . . C 3 -24.217 -4.166 -2.477 1 27.14 ? O1N NAP 402 A 1 HETATM 26 O O2N NAP . . . C 3 -23.249 -5.176 -4.613 1 22.82 ? O2N NAP 402 A 1 HETATM 27 O O5D NAP . . . C 3 -22.782 -2.778 -3.957 1 31.34 ? O5D NAP 402 A 1 HETATM 28 C C5D NAP . . . C 3 -21.995 -2.549 -5.143 1 25.19 ? C5D NAP 402 A 1 HETATM 29 C C4D NAP . . . C 3 -21.275 -1.226 -5.038 1 28.41 ? C4D NAP 402 A 1 HETATM 30 O O4D NAP . . . C 3 -22.236 -0.154 -4.89 1 32.77 ? O4D NAP 402 A 1 HETATM 31 C C3D NAP . . . C 3 -20.3 -1.068 -3.872 1 26.9 ? C3D NAP 402 A 1 HETATM 32 O O3D NAP . . . C 3 -19.253 -0.204 -4.298 1 26.24 ? O3D NAP 402 A 1 HETATM 33 C C2D NAP . . . C 3 -21.162 -0.38 -2.812 1 27.96 ? C2D NAP 402 A 1 HETATM 34 O O2D NAP . . . C 3 -20.353 0.318 -1.869 1 27 ? O2D NAP 402 A 1 HETATM 35 C C1D NAP . . . C 3 -21.982 0.557 -3.703 1 25.63 ? C1D NAP 402 A 1 HETATM 36 N N1N NAP . . . C 3 -23.336 1.028 -3.131 1 32.85 ? N1N NAP 402 A 1 HETATM 37 C C2N NAP . . . C 3 -24.151 0.11 -2.577 1 26.3 ? C2N NAP 402 A 1 HETATM 38 C C3N NAP . . . C 3 -25.421 0.468 -2.168 1 28.91 ? C3N NAP 402 A 1 HETATM 39 C C7N NAP . . . C 3 -26.451 -0.545 -1.777 1 26.89 ? C7N NAP 402 A 1 HETATM 40 O O7N NAP . . . C 3 -27.491 -0.167 -1.208 1 29.85 ? O7N NAP 402 A 1 HETATM 41 N N7N NAP . . . C 3 -26.182 -1.831 -2.006 1 30.89 ? N7N NAP 402 A 1 HETATM 42 C C4N NAP . . . C 3 -25.82 1.797 -2.315 1 29.22 ? C4N NAP 402 A 1 HETATM 43 C C5N NAP . . . C 3 -24.969 2.712 -2.905 1 24.08 ? C5N NAP 402 A 1 HETATM 44 C C6N NAP . . . C 3 -23.718 2.309 -3.308 1 27.33 ? C6N NAP 402 A 1 HETATM 45 P P2B NAP . . . C 3 -16.096 -10.577 -2.587 1 33.75 ? P2B NAP 402 A 1 HETATM 46 O O1X NAP . . . C 3 -17.335 -11.329 -2.97 1 31.27 ? O1X NAP 402 A 1 HETATM 47 O O2X NAP . . . C 3 -14.8 -11.402 -2.695 1 33.28 ? O2X NAP 402 A 1 HETATM 48 O O3X NAP . . . C 3 -16.193 -9.955 -1.191 1 27.15 ? O3X NAP 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #