data_5UZH
#
_model_server_result.job_id            P9yrXQQ6PRhixI97ZMvUoQ 
_model_server_result.datetime_utc      '2024-12-04 02:46:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5uzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5UZH 
#
_exptl.entry_id    5UZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UZH 
_cell.length_a            92.73 
_cell.length_b            92.73 
_cell.length_c            94.66 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 282 n n 
C1 H11 MPD sing 283 n n 
C1 H12 MPD sing 284 n n 
C1 H13 MPD sing 285 n n 
C2 O2 MPD sing 286 n n 
C2 CM MPD sing 287 n n 
C2 C3 MPD sing 288 n n 
O2 HO2 MPD sing 289 n n 
CM HM1 MPD sing 290 n n 
CM HM2 MPD sing 291 n n 
CM HM3 MPD sing 292 n n 
C3 C4 MPD sing 293 n n 
C3 H31 MPD sing 294 n n 
C3 H32 MPD sing 295 n n 
C4 O4 MPD sing 296 n n 
C4 C5 MPD sing 297 n n 
C4 H4 MPD sing 298 n n 
O4 HO4 MPD sing 299 n n 
C5 H51 MPD sing 300 n n 
C5 H52 MPD sing 301 n n 
C5 H53 MPD sing 302 n n 
#
_atom_sites.entry_id                     5UZH 
_atom_sites.fract_transf_matrix[1][1]    0.010784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 401 GDP GDP . 
C 3 NAP A 1 402 411 NAP NAP . 
D 4 MPD A 1 403 501 MPD MPD . 
E 4 MPD A 1 404 502 MPD MPD . 
F 4 MPD A 1 405 503 MPD MPD . 
G 5 CL A 1 406 601 CL CL . 
H 6 HOH A 1 501 59 HOH HOH . 
H 6 HOH A 2 502 31 HOH HOH . 
H 6 HOH A 3 503 80 HOH HOH . 
H 6 HOH A 4 504 85 HOH HOH . 
H 6 HOH A 5 505 60 HOH HOH . 
H 6 HOH A 6 506 149 HOH HOH . 
H 6 HOH A 7 507 58 HOH HOH . 
H 6 HOH A 8 508 14 HOH HOH . 
H 6 HOH A 9 509 92 HOH HOH . 
H 6 HOH A 10 510 129 HOH HOH . 
H 6 HOH A 11 511 36 HOH HOH . 
H 6 HOH A 12 512 162 HOH HOH . 
H 6 HOH A 13 513 42 HOH HOH . 
H 6 HOH A 14 514 43 HOH HOH . 
H 6 HOH A 15 515 2 HOH HOH . 
H 6 HOH A 16 516 133 HOH HOH . 
H 6 HOH A 17 517 52 HOH HOH . 
H 6 HOH A 18 518 123 HOH HOH . 
H 6 HOH A 19 519 67 HOH HOH . 
H 6 HOH A 20 520 29 HOH HOH . 
H 6 HOH A 21 521 56 HOH HOH . 
H 6 HOH A 22 522 27 HOH HOH . 
H 6 HOH A 23 523 120 HOH HOH . 
H 6 HOH A 24 524 21 HOH HOH . 
H 6 HOH A 25 525 95 HOH HOH . 
H 6 HOH A 26 526 76 HOH HOH . 
H 6 HOH A 27 527 12 HOH HOH . 
H 6 HOH A 28 528 81 HOH HOH . 
H 6 HOH A 29 529 22 HOH HOH . 
H 6 HOH A 30 530 23 HOH HOH . 
H 6 HOH A 31 531 35 HOH HOH . 
H 6 HOH A 32 532 46 HOH HOH . 
H 6 HOH A 33 533 94 HOH HOH . 
H 6 HOH A 34 534 9 HOH HOH . 
H 6 HOH A 35 535 99 HOH HOH . 
H 6 HOH A 36 536 16 HOH HOH . 
H 6 HOH A 37 537 17 HOH HOH . 
H 6 HOH A 38 538 10 HOH HOH . 
H 6 HOH A 39 539 104 HOH HOH . 
H 6 HOH A 40 540 51 HOH HOH . 
H 6 HOH A 41 541 45 HOH HOH . 
H 6 HOH A 42 542 3 HOH HOH . 
H 6 HOH A 43 543 114 HOH HOH . 
H 6 HOH A 44 544 50 HOH HOH . 
H 6 HOH A 45 545 78 HOH HOH . 
H 6 HOH A 46 546 44 HOH HOH . 
H 6 HOH A 47 547 39 HOH HOH . 
H 6 HOH A 48 548 161 HOH HOH . 
H 6 HOH A 49 549 54 HOH HOH . 
H 6 HOH A 50 550 102 HOH HOH . 
H 6 HOH A 51 551 28 HOH HOH . 
H 6 HOH A 52 552 97 HOH HOH . 
H 6 HOH A 53 553 63 HOH HOH . 
H 6 HOH A 54 554 40 HOH HOH . 
H 6 HOH A 55 555 19 HOH HOH . 
H 6 HOH A 56 556 163 HOH HOH . 
H 6 HOH A 57 557 96 HOH HOH . 
H 6 HOH A 58 558 5 HOH HOH . 
H 6 HOH A 59 559 61 HOH HOH . 
H 6 HOH A 60 560 106 HOH HOH . 
H 6 HOH A 61 561 53 HOH HOH . 
H 6 HOH A 62 562 137 HOH HOH . 
H 6 HOH A 63 563 11 HOH HOH . 
H 6 HOH A 64 564 8 HOH HOH . 
H 6 HOH A 65 565 127 HOH HOH . 
H 6 HOH A 66 566 69 HOH HOH . 
H 6 HOH A 67 567 15 HOH HOH . 
H 6 HOH A 68 568 37 HOH HOH . 
H 6 HOH A 69 569 26 HOH HOH . 
H 6 HOH A 70 570 25 HOH HOH . 
H 6 HOH A 71 571 110 HOH HOH . 
H 6 HOH A 72 572 30 HOH HOH . 
H 6 HOH A 73 573 65 HOH HOH . 
H 6 HOH A 74 574 93 HOH HOH . 
H 6 HOH A 75 575 6 HOH HOH . 
H 6 HOH A 76 576 48 HOH HOH . 
H 6 HOH A 77 577 70 HOH HOH . 
H 6 HOH A 78 578 66 HOH HOH . 
H 6 HOH A 79 579 136 HOH HOH . 
H 6 HOH A 80 580 98 HOH HOH . 
H 6 HOH A 81 581 91 HOH HOH . 
H 6 HOH A 82 582 82 HOH HOH . 
H 6 HOH A 83 583 33 HOH HOH . 
H 6 HOH A 84 584 89 HOH HOH . 
H 6 HOH A 85 585 4 HOH HOH . 
H 6 HOH A 86 586 38 HOH HOH . 
H 6 HOH A 87 587 77 HOH HOH . 
H 6 HOH A 88 588 24 HOH HOH . 
H 6 HOH A 89 589 68 HOH HOH . 
H 6 HOH A 90 590 86 HOH HOH . 
H 6 HOH A 91 591 105 HOH HOH . 
H 6 HOH A 92 592 142 HOH HOH . 
H 6 HOH A 93 593 108 HOH HOH . 
H 6 HOH A 94 594 55 HOH HOH . 
H 6 HOH A 95 595 20 HOH HOH . 
H 6 HOH A 96 596 109 HOH HOH . 
H 6 HOH A 97 597 101 HOH HOH . 
H 6 HOH A 98 598 117 HOH HOH . 
H 6 HOH A 99 599 150 HOH HOH . 
H 6 HOH A 100 600 128 HOH HOH . 
H 6 HOH A 101 601 100 HOH HOH . 
H 6 HOH A 102 602 74 HOH HOH . 
H 6 HOH A 103 603 143 HOH HOH . 
H 6 HOH A 104 604 49 HOH HOH . 
H 6 HOH A 105 605 122 HOH HOH . 
H 6 HOH A 106 606 139 HOH HOH . 
H 6 HOH A 107 607 125 HOH HOH . 
H 6 HOH A 108 608 87 HOH HOH . 
H 6 HOH A 109 609 57 HOH HOH . 
H 6 HOH A 110 610 7 HOH HOH . 
H 6 HOH A 111 611 119 HOH HOH . 
H 6 HOH A 112 612 13 HOH HOH . 
H 6 HOH A 113 613 34 HOH HOH . 
H 6 HOH A 114 614 138 HOH HOH . 
H 6 HOH A 115 615 124 HOH HOH . 
H 6 HOH A 116 616 1 HOH HOH . 
H 6 HOH A 117 617 64 HOH HOH . 
H 6 HOH A 118 618 71 HOH HOH . 
H 6 HOH A 119 619 47 HOH HOH . 
H 6 HOH A 120 620 41 HOH HOH . 
H 6 HOH A 121 621 146 HOH HOH . 
H 6 HOH A 122 622 131 HOH HOH . 
H 6 HOH A 123 623 145 HOH HOH . 
H 6 HOH A 124 624 152 HOH HOH . 
H 6 HOH A 125 625 116 HOH HOH . 
H 6 HOH A 126 626 115 HOH HOH . 
H 6 HOH A 127 627 159 HOH HOH . 
H 6 HOH A 128 628 79 HOH HOH . 
H 6 HOH A 129 629 113 HOH HOH . 
H 6 HOH A 130 630 72 HOH HOH . 
H 6 HOH A 131 631 134 HOH HOH . 
H 6 HOH A 132 632 147 HOH HOH . 
H 6 HOH A 133 633 165 HOH HOH . 
H 6 HOH A 134 634 90 HOH HOH . 
H 6 HOH A 135 635 73 HOH HOH . 
H 6 HOH A 136 636 75 HOH HOH . 
H 6 HOH A 137 637 151 HOH HOH . 
H 6 HOH A 138 638 88 HOH HOH . 
H 6 HOH A 139 639 140 HOH HOH . 
H 6 HOH A 140 640 166 HOH HOH . 
H 6 HOH A 141 641 83 HOH HOH . 
H 6 HOH A 142 642 157 HOH HOH . 
H 6 HOH A 143 643 144 HOH HOH . 
H 6 HOH A 144 644 158 HOH HOH . 
H 6 HOH A 145 645 156 HOH HOH . 
H 6 HOH A 146 646 132 HOH HOH . 
H 6 HOH A 147 647 130 HOH HOH . 
H 6 HOH A 148 648 164 HOH HOH . 
H 6 HOH A 149 649 155 HOH HOH . 
H 6 HOH A 150 650 153 HOH HOH . 
H 6 HOH A 151 651 62 HOH HOH . 
H 6 HOH A 152 652 135 HOH HOH . 
H 6 HOH A 153 653 32 HOH HOH . 
H 6 HOH A 154 654 167 HOH HOH . 
H 6 HOH A 155 655 118 HOH HOH . 
H 6 HOH A 156 656 18 HOH HOH . 
H 6 HOH A 157 657 84 HOH HOH . 
H 6 HOH A 158 658 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 -23.448 19.045 -11.702 1 52.72 ? C1 MPD 403 A 1 
HETATM 2 C C2 MPD . . . D 4 -23.518 18.327 -10.355 1 50.91 ? C2 MPD 403 A 1 
HETATM 3 O O2 MPD . . . D 4 -23.707 16.903 -10.602 1 48.49 ? O2 MPD 403 A 1 
HETATM 4 C CM MPD . . . D 4 -24.704 18.852 -9.556 1 40.26 ? CM MPD 403 A 1 
HETATM 5 C C3 MPD . . . D 4 -22.24 18.519 -9.539 1 50.62 ? C3 MPD 403 A 1 
HETATM 6 C C4 MPD . . . D 4 -20.984 18.177 -10.333 1 52.63 ? C4 MPD 403 A 1 
HETATM 7 O O4 MPD . . . D 4 -20.383 19.378 -10.747 1 56.77 ? O4 MPD 403 A 1 
HETATM 8 C C5 MPD . . . D 4 -19.989 17.415 -9.474 1 48.67 ? C5 MPD 403 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#