data_5UZU # _model_server_result.job_id 655VeU1wAel1EjsK1wQ1_g _model_server_result.datetime_utc '2024-11-15 13:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 5UZU # _exptl.entry_id 5UZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.14 _cell.angle_gamma 90 _cell.entry_id 5UZU _cell.length_a 129.034 _cell.length_b 92.944 _cell.length_c 80.394 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1056 NAG 3 n C NAG 2 C 2 NAG A 1057 NAG 3 n C BMA 3 C 3 BMA A 1058 BMA 4 n D NAG 1 D 1 NAG A 1059 NAG 4 n D NAG 2 D 2 NAG A 1060 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 1 A CYS 167 1_555 B SG CYS 14 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 B SG CYS 115 A CYS 281 1_555 B SG CYS 125 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 119 A CYS 285 1_555 B SG CYS 143 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 221 A CYS 387 1_555 B SG CYS 232 A CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 440 A CYS 606 1_555 B SG CYS 497 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 538 A CYS 704 1_555 B SG CYS 564 A CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B C SER 149 A SER 315 1_555 B N CSO 150 A CSO 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C CSO 150 A CSO 316 1_555 B N PRO 151 A PRO 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 B ND2 ASN 225 A ASN 391 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 B O ASP 96 A ASP 262 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 B OD1 ASP 96 A ASP 262 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 B O THR 168 A THR 334 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 B OG1 THR 168 A THR 334 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc5 B O PHE 170 A PHE 336 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 B OD1 ASP 172 A ASP 338 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc7 B OG SER 174 A SER 340 1_555 F CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UZU _atom_sites.fract_transf_matrix[1][1] 0.00775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 801 805 NAG NAG . F 6 CA A 1 802 806 CA CA . G 7 CL A 1 803 807 CL CL . H 7 CL A 1 804 808 CL CL . I 7 CL A 1 805 809 CL CL . J 8 HOH B 1 201 201 HOH HOH . J 8 HOH B 2 202 202 HOH HOH . J 8 HOH B 3 203 203 HOH HOH . J 8 HOH B 4 204 204 HOH HOH . J 8 HOH B 5 205 205 HOH HOH . J 8 HOH B 6 206 206 HOH HOH . J 8 HOH B 7 207 207 HOH HOH . J 8 HOH B 8 208 208 HOH HOH . J 8 HOH B 9 209 209 HOH HOH . J 8 HOH B 10 210 210 HOH HOH . J 8 HOH B 11 211 212 HOH HOH . J 8 HOH B 12 212 213 HOH HOH . J 8 HOH B 13 213 214 HOH HOH . K 8 HOH A 1 901 901 HOH HOH . K 8 HOH A 2 902 902 HOH HOH . K 8 HOH A 3 903 904 HOH HOH . K 8 HOH A 4 904 903 HOH HOH . K 8 HOH A 5 905 913 HOH HOH . K 8 HOH A 6 906 906 HOH HOH . K 8 HOH A 7 907 907 HOH HOH . K 8 HOH A 8 908 905 HOH HOH . K 8 HOH A 9 909 911 HOH HOH . K 8 HOH A 10 910 918 HOH HOH . K 8 HOH A 11 911 914 HOH HOH . K 8 HOH A 12 912 916 HOH HOH . K 8 HOH A 13 913 917 HOH HOH . K 8 HOH A 14 914 910 HOH HOH . K 8 HOH A 15 915 908 HOH HOH . K 8 HOH A 16 916 920 HOH HOH . K 8 HOH A 17 917 912 HOH HOH . K 8 HOH A 18 918 915 HOH HOH . K 8 HOH A 19 919 909 HOH HOH . K 8 HOH A 20 920 922 HOH HOH . K 8 HOH A 21 921 919 HOH HOH . K 8 HOH A 22 922 923 HOH HOH . K 8 HOH A 23 923 924 HOH HOH . K 8 HOH A 24 924 945 HOH HOH . K 8 HOH A 25 925 926 HOH HOH . K 8 HOH A 26 926 925 HOH HOH . K 8 HOH A 27 927 921 HOH HOH . K 8 HOH A 28 928 946 HOH HOH . K 8 HOH A 29 929 927 HOH HOH . K 8 HOH A 30 930 934 HOH HOH . K 8 HOH A 31 931 933 HOH HOH . K 8 HOH A 32 932 941 HOH HOH . K 8 HOH A 33 933 931 HOH HOH . K 8 HOH A 34 934 937 HOH HOH . K 8 HOH A 35 935 950 HOH HOH . K 8 HOH A 36 936 936 HOH HOH . K 8 HOH A 37 937 930 HOH HOH . K 8 HOH A 38 938 954 HOH HOH . K 8 HOH A 39 939 942 HOH HOH . K 8 HOH A 40 940 932 HOH HOH . K 8 HOH A 41 941 967 HOH HOH . K 8 HOH A 42 942 929 HOH HOH . K 8 HOH A 43 943 944 HOH HOH . K 8 HOH A 44 944 943 HOH HOH . K 8 HOH A 45 945 940 HOH HOH . K 8 HOH A 46 946 935 HOH HOH . K 8 HOH A 47 947 939 HOH HOH . K 8 HOH A 48 948 938 HOH HOH . K 8 HOH A 49 949 958 HOH HOH . K 8 HOH A 50 950 949 HOH HOH . K 8 HOH A 51 951 947 HOH HOH . K 8 HOH A 52 952 948 HOH HOH . K 8 HOH A 53 953 951 HOH HOH . K 8 HOH A 54 954 956 HOH HOH . K 8 HOH A 55 955 953 HOH HOH . K 8 HOH A 56 956 982 HOH HOH . K 8 HOH A 57 957 952 HOH HOH . K 8 HOH A 58 958 928 HOH HOH . K 8 HOH A 59 959 961 HOH HOH . K 8 HOH A 60 960 972 HOH HOH . K 8 HOH A 61 961 959 HOH HOH . K 8 HOH A 62 962 957 HOH HOH . K 8 HOH A 63 963 960 HOH HOH . K 8 HOH A 64 964 976 HOH HOH . K 8 HOH A 65 965 966 HOH HOH . K 8 HOH A 66 966 964 HOH HOH . K 8 HOH A 67 967 980 HOH HOH . K 8 HOH A 68 968 962 HOH HOH . K 8 HOH A 69 969 970 HOH HOH . K 8 HOH A 70 970 978 HOH HOH . K 8 HOH A 71 971 955 HOH HOH . K 8 HOH A 72 972 977 HOH HOH . K 8 HOH A 73 973 974 HOH HOH . K 8 HOH A 74 974 975 HOH HOH . K 8 HOH A 75 975 965 HOH HOH . K 8 HOH A 76 976 963 HOH HOH . K 8 HOH A 77 977 968 HOH HOH . K 8 HOH A 78 978 981 HOH HOH . K 8 HOH A 79 979 1033 HOH HOH . K 8 HOH A 80 980 979 HOH HOH . K 8 HOH A 81 981 994 HOH HOH . K 8 HOH A 82 982 969 HOH HOH . K 8 HOH A 83 983 984 HOH HOH . K 8 HOH A 84 984 983 HOH HOH . K 8 HOH A 85 985 989 HOH HOH . K 8 HOH A 86 986 971 HOH HOH . K 8 HOH A 87 987 988 HOH HOH . K 8 HOH A 88 988 997 HOH HOH . K 8 HOH A 89 989 973 HOH HOH . K 8 HOH A 90 990 990 HOH HOH . K 8 HOH A 91 991 993 HOH HOH . K 8 HOH A 92 992 985 HOH HOH . K 8 HOH A 93 993 992 HOH HOH . K 8 HOH A 94 994 1001 HOH HOH . K 8 HOH A 95 995 1002 HOH HOH . K 8 HOH A 96 996 991 HOH HOH . K 8 HOH A 97 997 987 HOH HOH . K 8 HOH A 98 998 1004 HOH HOH . K 8 HOH A 99 999 998 HOH HOH . K 8 HOH A 100 1000 1000 HOH HOH . K 8 HOH A 101 1001 999 HOH HOH . K 8 HOH A 102 1002 995 HOH HOH . K 8 HOH A 103 1003 1006 HOH HOH . K 8 HOH A 104 1004 1005 HOH HOH . K 8 HOH A 105 1005 1016 HOH HOH . K 8 HOH A 106 1006 1014 HOH HOH . K 8 HOH A 107 1007 1009 HOH HOH . K 8 HOH A 108 1008 1007 HOH HOH . K 8 HOH A 109 1009 996 HOH HOH . K 8 HOH A 110 1010 1010 HOH HOH . K 8 HOH A 111 1011 1011 HOH HOH . K 8 HOH A 112 1012 1015 HOH HOH . K 8 HOH A 113 1013 1012 HOH HOH . K 8 HOH A 114 1014 1017 HOH HOH . K 8 HOH A 115 1015 1018 HOH HOH . K 8 HOH A 116 1016 1008 HOH HOH . K 8 HOH A 117 1017 986 HOH HOH . K 8 HOH A 118 1018 1003 HOH HOH . K 8 HOH A 119 1019 1029 HOH HOH . K 8 HOH A 120 1020 1013 HOH HOH . K 8 HOH A 121 1021 1026 HOH HOH . K 8 HOH A 122 1022 1022 HOH HOH . K 8 HOH A 123 1023 1025 HOH HOH . K 8 HOH A 124 1024 1019 HOH HOH . K 8 HOH A 125 1025 1021 HOH HOH . K 8 HOH A 126 1026 1024 HOH HOH . K 8 HOH A 127 1027 1027 HOH HOH . K 8 HOH A 128 1028 1040 HOH HOH . K 8 HOH A 129 1029 211 HOH HOH . K 8 HOH A 130 1030 1030 HOH HOH . K 8 HOH A 131 1031 1032 HOH HOH . K 8 HOH A 132 1032 1023 HOH HOH . K 8 HOH A 133 1033 1028 HOH HOH . K 8 HOH A 134 1034 1020 HOH HOH . K 8 HOH A 135 1035 1039 HOH HOH . K 8 HOH A 136 1036 1031 HOH HOH . K 8 HOH A 137 1037 1034 HOH HOH . K 8 HOH A 138 1038 1036 HOH HOH . K 8 HOH A 139 1039 1041 HOH HOH . K 8 HOH A 140 1040 1037 HOH HOH . K 8 HOH A 141 1041 1035 HOH HOH . K 8 HOH A 142 1042 1038 HOH HOH . K 8 HOH A 143 1043 1042 HOH HOH . K 8 HOH A 144 1044 1043 HOH HOH . K 8 HOH A 145 1045 1044 HOH HOH . K 8 HOH A 146 1046 1045 HOH HOH . K 8 HOH A 147 1047 1051 HOH HOH . K 8 HOH A 148 1048 1046 HOH HOH . K 8 HOH A 149 1049 1047 HOH HOH . K 8 HOH A 150 1050 1048 HOH HOH . K 8 HOH A 151 1051 1049 HOH HOH . K 8 HOH A 152 1052 1050 HOH HOH . K 8 HOH A 153 1053 1052 HOH HOH . K 8 HOH A 154 1054 1053 HOH HOH . K 8 HOH A 155 1055 1054 HOH HOH . K 8 HOH A 156 1056 1055 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 26.222 _atom_site.Cartn_y 6.854 _atom_site.Cartn_z 23.367 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #