data_5V02 # _model_server_result.job_id ITS56uxs8rqiYjWn8amQwg _model_server_result.datetime_utc '2024-10-12 13:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5V02 # _exptl.entry_id 5V02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.27 _cell.angle_gamma 90 _cell.entry_id 5V02 _cell.length_a 77.762 _cell.length_b 66.554 _cell.length_c 65.131 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 21 R ASP 20 1_555 H CA CA . R CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 B OD1 ASP 25 R ASP 24 1_555 H CA CA . R CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 B O THR 27 R THR 26 1_555 H CA CA . R CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 B OE1 GLU 32 R GLU 31 1_555 H CA CA . R CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 B OE2 GLU 32 R GLU 31 1_555 H CA CA . R CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 B OD1 ASP 57 R ASP 56 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 B OD1 ASP 59 R ASP 58 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc8 B OD1 ASN 61 R ASN 60 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc9 B O THR 63 R THR 62 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc10 B OE1 GLU 68 R GLU 67 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc11 G CA CA . R CA 203 1_555 J O HOH . R HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc12 H CA CA . R CA 204 1_555 J O HOH . R HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V02 _atom_sites.fract_transf_matrix[1][1] 0.01286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 1 SO4 SO4 . D 3 SO4 B 1 502 501 SO4 SO4 . E 4 657 R 1 201 1 657 PFE . F 5 GOL R 1 202 206 GOL GOL . G 6 CA R 1 203 1001 CA CA . H 6 CA R 1 204 1002 CA CA . I 7 HOH B 1 601 58 HOH HOH . I 7 HOH B 2 602 22 HOH HOH . I 7 HOH B 3 603 14 HOH HOH . I 7 HOH B 4 604 21 HOH HOH . I 7 HOH B 5 605 56 HOH HOH . I 7 HOH B 6 606 29 HOH HOH . I 7 HOH B 7 607 64 HOH HOH . I 7 HOH B 8 608 13 HOH HOH . I 7 HOH B 9 609 46 HOH HOH . I 7 HOH B 10 610 54 HOH HOH . I 7 HOH B 11 611 48 HOH HOH . I 7 HOH B 12 612 6 HOH HOH . I 7 HOH B 13 613 26 HOH HOH . I 7 HOH B 14 614 23 HOH HOH . I 7 HOH B 15 615 8 HOH HOH . I 7 HOH B 16 616 12 HOH HOH . I 7 HOH B 17 617 41 HOH HOH . I 7 HOH B 18 618 47 HOH HOH . I 7 HOH B 19 619 51 HOH HOH . I 7 HOH B 20 620 63 HOH HOH . I 7 HOH B 21 621 9 HOH HOH . I 7 HOH B 22 622 35 HOH HOH . I 7 HOH B 23 623 43 HOH HOH . I 7 HOH B 24 624 59 HOH HOH . I 7 HOH B 25 625 50 HOH HOH . J 7 HOH R 1 301 55 HOH HOH . J 7 HOH R 2 302 39 HOH HOH . J 7 HOH R 3 303 53 HOH HOH . J 7 HOH R 4 304 5 HOH HOH . J 7 HOH R 5 305 42 HOH HOH . J 7 HOH R 6 306 61 HOH HOH . J 7 HOH R 7 307 18 HOH HOH . J 7 HOH R 8 308 37 HOH HOH . J 7 HOH R 9 309 49 HOH HOH . J 7 HOH R 10 310 30 HOH HOH . J 7 HOH R 11 311 44 HOH HOH . J 7 HOH R 12 312 60 HOH HOH . J 7 HOH R 13 313 17 HOH HOH . J 7 HOH R 14 314 31 HOH HOH . J 7 HOH R 15 315 32 HOH HOH . J 7 HOH R 16 316 27 HOH HOH . J 7 HOH R 17 317 20 HOH HOH . J 7 HOH R 18 318 10 HOH HOH . J 7 HOH R 19 319 11 HOH HOH . J 7 HOH R 20 320 33 HOH HOH . J 7 HOH R 21 321 57 HOH HOH . J 7 HOH R 22 322 3 HOH HOH . J 7 HOH R 23 323 1 HOH HOH . J 7 HOH R 24 324 52 HOH HOH . J 7 HOH R 25 325 7 HOH HOH . J 7 HOH R 26 326 34 HOH HOH . J 7 HOH R 27 327 24 HOH HOH . J 7 HOH R 28 328 16 HOH HOH . J 7 HOH R 29 329 19 HOH HOH . J 7 HOH R 30 330 62 HOH HOH . J 7 HOH R 31 331 2 HOH HOH . J 7 HOH R 32 332 28 HOH HOH . J 7 HOH R 33 333 36 HOH HOH . J 7 HOH R 34 334 40 HOH HOH . J 7 HOH R 35 335 45 HOH HOH . J 7 HOH R 36 336 25 HOH HOH . J 7 HOH R 37 337 38 HOH HOH . J 7 HOH R 38 338 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 40.918 _atom_site.Cartn_y 45.044 _atom_site.Cartn_z 58.27 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.38 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #